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ttkMergeTreeTemporalReductionEncoding Class Reference

TTK VTK-filter that wraps the ttk::MergeTreeTemporalReductionEncoding module. More...

#include <ttkMergeTreeTemporalReductionEncoding.h>

Inheritance diagram for ttkMergeTreeTemporalReductionEncoding:
ttkAlgorithm ttk::MergeTreeTemporalReductionEncoding ttk::Debug ttk::Debug ttk::MergeTreeBase ttk::BaseClass ttk::BaseClass ttk::Debug ttk::BaseClass

Public Types

typedef ttkAlgorithm Superclass
 
- Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm Superclass
 

Public Member Functions

void SetEpsilon1UseFarthestSaddle (bool epsilon1UseFarthestSaddle)
 
bool GetEpsilon1UseFarthestSaddle ()
 
void SetEpsilonTree1 (double epsilonTree1)
 
double SetEpsilonTree1 ()
 
void SetEpsilon2Tree1 (double epsilon2Tree1)
 
double SetEpsilon2Tree1 ()
 
void SetEpsilon3Tree1 (double epsilon3Tree1)
 
double SetEpsilon3Tree1 ()
 
void SetPersistenceThreshold (double persistenceThreshold)
 
double SetPersistenceThreshold ()
 
void SetUseMinMaxPair (bool useMinMaxPair)
 
bool SetUseMinMaxPair ()
 
void SetDeleteMultiPersPairs (bool doDelete)
 
bool SetDeleteMultiPersPairs ()
 
void SetAssignmentSolver (int assignmentSolver)
 
int GetAssignmentSolver ()
 
void SetRemovalPercentage (double removePerc)
 
double GetRemovalPercentage ()
 
void SetUseL2Distance (double useL2)
 
double GetUseL2Distance ()
 
void SetUseCustomTimeVariable (bool useCustomTime)
 
bool GetUseCustomTimeVariable ()
 
void SetTimeVariableName (int idx, int port, int connection, int fieldAssociation, const char *name)
 
virtual std::string GetTimeVariableName ()
 
virtual const char * GetClassName ()
 
virtual int IsA (const char *type)
 
- Public Member Functions inherited from ttkAlgorithm
virtual const char * GetClassName ()
 
virtual int IsA (const char *type)
 
void UpdateThreadNumber ()
 
void SetThreadNumber (int threadNumber)
 
void SetUseAllCores (bool useAllCores)
 
void SetDebugLevel (int debugLevel)
 
void SetCompactTriangulationCacheSize (float cacheSize)
 
vtkDataArray * GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)
 
vtkDataArray * GetOrderArray (vtkDataSet *const inputData, const int scalarArrayIdx, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)
 
ttk::SimplexIdGetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)
 
ttk::TriangulationGetTriangulation (vtkDataSet *dataSet)
 
int ProcessRequest (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override
 
vtkDataSet * GetOutput ()
 
vtkDataSet * GetOutput (int)
 
void SetInputData (vtkDataSet *)
 
void SetInputData (int, vtkDataSet *)
 
void AddInputData (vtkDataSet *)
 
void AddInputData (int, vtkDataSet *)
 
template<typename inputType >
int checkEmptyMPIInput (inputType *input)
 This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.
 
- Public Member Functions inherited from ttk::Debug
 Debug ()
 
 ~Debug () override
 
virtual int setDebugLevel (const int &debugLevel)
 
int setWrapper (const Wrapper *wrapper) override
 
int printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
void setDebugMsgPrefix (const std::string &prefix)
 
- Public Member Functions inherited from ttk::BaseClass
 BaseClass ()
 
virtual ~BaseClass ()=default
 
int getThreadNumber () const
 
virtual int setThreadNumber (const int threadNumber)
 
virtual int setWrapper (const Wrapper *wrapper)
 

Static Public Member Functions

static ttkMergeTreeTemporalReductionEncodingNew ()
 
static int IsTypeOf (const char *type)
 
static ttkMergeTreeTemporalReductionEncodingSafeDownCast (vtkObject *o)
 
- Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithmNew ()
 
static int IsTypeOf (const char *type)
 
static ttkAlgorithmSafeDownCast (vtkObject *o)
 
static std::string GetOrderArrayName (vtkDataArray *const array)
 
static vtkInformationIntegerKey * SAME_DATA_TYPE_AS_INPUT_PORT ()
 

Protected Member Functions

 ttkMergeTreeTemporalReductionEncoding ()
 
 ~ttkMergeTreeTemporalReductionEncoding () override
 
int FillInputPortInformation (int port, vtkInformation *info) override
 
int FillOutputPortInformation (int port, vtkInformation *info) override
 
int RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
 
template<class dataType >
int run (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees)
 
template<class dataType >
int runCompute (std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees)
 
template<class dataType >
int runOutput (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees)
 
- Protected Member Functions inherited from ttkAlgorithm
 ttkAlgorithm ()
 
 ~ttkAlgorithm () override
 
void MPIGhostPipelinePreconditioning (vtkDataSet *input)
 
void MPIPipelinePreconditioning (vtkDataSet *input, std::vector< int > &neighbors, ttk::Triangulation *triangulation=nullptr)
 
bool checkGlobalIdValidity (ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray)
 
int GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks)
 
void MPITriangulationPreconditioning (ttk::Triangulation *triangulation, vtkDataSet *input)
 
virtual int RequestDataObject (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector)
 
virtual int RequestInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateTime (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateTimeDependentInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateExtent (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestDataNotGenerated (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestData (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
int FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
 
int FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
 
- Protected Member Functions inherited from ttk::Debug
int printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
 
int welcomeMsg (std::ostream &stream)
 
- Protected Member Functions inherited from ttk::MergeTreeTemporalReductionEncoding
 MergeTreeTemporalReductionEncoding ()
 
void setRemovalPercentage (double rs)
 
void setUseL2Distance (bool useL2)
 
template<class dataType >
dataType computeL2Distance (std::vector< dataType > &img1, std::vector< dataType > &img2, bool emptyFieldDistance=false)
 
template<class dataType >
std::vector< dataType > computeL2Barycenter (std::vector< dataType > &img1, std::vector< dataType > &img2, double alpha)
 
template<class dataType >
dataType computeDistance (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool emptyTreeDistance=false)
 
template<class dataType >
ftm::MergeTree< dataType > computeBarycenter (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, double alpha)
 
double computeAlpha (int index1, int middleIndex, int index2)
 
template<class dataType >
void temporalSubsampling (std::vector< ftm::MergeTree< dataType > > &mTrees, std::vector< int > &removed, std::vector< ftm::MergeTree< dataType > > &barycenters, std::vector< std::vector< dataType > > &barycentersL2)
 
template<class dataType >
std::vector< int > execute (std::vector< ftm::MergeTree< dataType > > &mTrees, std::vector< double > &emptyTreeDistances, std::vector< ftm::MergeTree< dataType > > &allMT)
 
- Protected Member Functions inherited from ttk::MergeTreeBase
 MergeTreeBase ()
 
void setAssignmentSolver (int assignmentSolver)
 
void setEpsilon1UseFarthestSaddle (bool b)
 
void setEpsilonTree1 (double epsilon)
 
void setEpsilonTree2 (double epsilon)
 
void setEpsilon2Tree1 (double epsilon)
 
void setEpsilon2Tree2 (double epsilon)
 
void setEpsilon3Tree1 (double epsilon)
 
void setEpsilon3Tree2 (double epsilon)
 
void setPersistenceThreshold (double pt)
 
void setParallelize (bool para)
 
void setNodePerTask (int npt)
 
void setBranchDecomposition (bool useBD)
 
void setNormalizedWasserstein (bool normalizedWasserstein)
 
void setKeepSubtree (bool keepSubtree)
 
void setBarycenterMergeTree (bool imt)
 
void setDistanceSquaredRoot (bool distanceSquaredRoot)
 
void setUseMinMaxPair (bool useMinMaxPair)
 
void setDeleteMultiPersPairs (bool deleteMultiPersPairsT)
 
void setCleanTree (bool clean)
 
void setIsPersistenceDiagram (bool isPD)
 
std::vector< std::vector< int > > getTreesNodeCorr ()
 
double mixDistancesMinMaxPairWeight (bool isFirstInput)
 
double mixDistancesWeight (bool isFirstInput)
 
template<class dataType >
double mixDistances (dataType distance1, dataType distance2)
 
template<class dataType >
void mixDistancesMatrix (std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)
 
template<class dataType >
void mergeSaddle (ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)
 
template<class dataType >
void persistenceMerging (ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)
 
template<class dataType >
void keepMostImportantPairs (ftm::FTMTree_MT *tree, int n, bool useBD)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree)
 
template<class dataType >
void verifyOrigins (ftm::FTMTree_MT *tree)
 
template<class dataType >
void preprocessTree (ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)
 
template<class dataType >
ftm::FTMTree_MTcomputeBranchDecomposition (ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)
 
template<class dataType >
void dontUseMinMaxPair (ftm::FTMTree_MT *tree)
 
void verifyPairsTree (ftm::FTMTree_MT *tree)
 
template<class dataType >
void deleteMultiPersPairs (ftm::FTMTree_MT *tree, bool useBD)
 
template<class dataType >
void preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)
 
template<class dataType >
void preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)
 
void reverseNodeCorr (ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)
 
template<class dataType >
void mtFlattening (ftm::MergeTree< dataType > &mt)
 
template<class dataType >
void mtsFlattening (std::vector< ftm::MergeTree< dataType > > &mts)
 
double getSizeLimitMetric (std::vector< ftm::FTMTree_MT * > &trees)
 
template<class dataType >
void copyMinMaxPair (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)
 
template<class dataType >
std::tuple< int, dataType > fixMergedRootOrigin (ftm::FTMTree_MT *tree)
 
template<class dataType >
void branchDecompositionToTree (ftm::FTMTree_MT *tree)
 
template<class dataType >
void putBackMergedNodes (ftm::FTMTree_MT *tree)
 
template<class dataType >
void postprocessingPipeline (ftm::FTMTree_MT *tree)
 
template<class dataType >
void convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)
 
template<class dataType >
void convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)
 
template<class dataType >
void identifyRealMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)
 
template<class dataType >
dataType computeDistance (dataType x1, dataType x2, dataType y1, dataType y2, double power=2)
 
template<class dataType >
dataType deleteCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)
 
template<class dataType >
dataType insertCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)
 
template<class dataType >
dataType relabelCostOnly (ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
 
template<class dataType >
dataType relabelCost (ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
 
void getParamNames (std::vector< std::string > &paramNames)
 
double getParamValueFromName (std::string &paramName)
 
void setParamValueFromName (std::string &paramName, double value)
 
void getTreesStats (std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)
 
void printTreesStats (std::vector< ftm::FTMTree_MT * > &trees)
 
template<class dataType >
void printTreesStats (std::vector< ftm::MergeTree< dataType > > &trees)
 
template<class dataType >
void printTableVector (std::vector< std::vector< dataType > > &table)
 
template<class dataType >
void printTable (dataType *table, int nRows, int nCols)
 
void printMatching (std::vector< MatchingType > &matchings)
 
void printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)
 
void printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)
 
template<class dataType >
void printPairs (std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)
 
template<class dataType >
void printOutputMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true)
 

Additional Inherited Members

- Protected Attributes inherited from ttkAlgorithm
float CompactTriangulationCacheSize {0.2f}
 
- Protected Attributes inherited from ttk::Debug
int debugLevel_
 
std::string debugMsgPrefix_
 
std::string debugMsgNamePrefix_
 
- Protected Attributes inherited from ttk::BaseClass
bool lastObject_
 
int threadNumber_
 
Wrapperwrapper_
 
- Protected Attributes inherited from ttk::MergeTreeTemporalReductionEncoding
double removalPercentage_ = 50.
 
bool useL2Distance_ = false
 
std::vector< std::vector< double > > fieldL2_
 
bool useCustomTimeVariable_ = false
 
std::vector< double > timeVariable_
 
- Protected Attributes inherited from ttk::MergeTreeBase
int assignmentSolverID_ = 0
 
bool epsilon1UseFarthestSaddle_ = false
 
double epsilonTree1_ = 0
 
double epsilonTree2_ = 0
 
double epsilon2Tree1_ = 100
 
double epsilon2Tree2_ = 100
 
double epsilon3Tree1_ = 100
 
double epsilon3Tree2_ = 100
 
double persistenceThreshold_ = 0
 
bool barycenterMergeTree_ = false
 
bool useMinMaxPair_ = true
 
bool deleteMultiPersPairs_ = false
 
bool branchDecomposition_ = true
 
int wassersteinPower_ = 2
 
bool normalizedWasserstein_ = true
 
bool keepSubtree_ = false
 
bool distanceSquaredRoot_ = true
 
bool useFullMerge_ = false
 
bool isPersistenceDiagram_ = false
 
bool convertToDiagram_ = false
 
double mixtureCoefficient_ = 0.5
 
bool useDoubleInput_ = false
 
bool parallelize_ = true
 
int nodePerTask_ = 32
 
bool cleanTree_ = true
 
std::vector< std::vector< int > > treesNodeCorr_
 
- Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode lastLineMode = ttk::debug::LineMode::NEW
 

Detailed Description

TTK VTK-filter that wraps the ttk::MergeTreeTemporalReductionEncoding module.

Author
Mathieu Pont (mathi.nosp@m.eu.p.nosp@m.ont@l.nosp@m.ip6..nosp@m.fr)
Date
2021.

This VTK filter uses the ttk::MergeTreeTemporalReductionEncoding module to compute a temporal reduction of a sequence of merge trees.

Parameters
InputvtkMultiBlockDataSet Input trees
OutputvtkMultiBlockDataSet Key frames.
OutputvtkTable Interpolation coefficients.

This filter can be used as any other VTK filter (for instance, by using the sequence of calls SetInputData(), Update(), GetOutputDataObject()).

See the related ParaView example state files for usage examples within a VTK pipeline.

See also
ttk::MergeTreeTemporalReductionEncoding
ttkAlgorithm

Related publication
"Wasserstein Distances, Geodesics and Barycenters of Merge Trees"
Mathieu Pont, Jules Vidal, Julie Delon, Julien Tierny.
Proc. of IEEE VIS 2021.
IEEE Transactions on Visualization and Computer Graphics, 2021

Online examples:

Definition at line 50 of file ttkMergeTreeTemporalReductionEncoding.h.

Member Typedef Documentation

◆ Superclass

Definition at line 217 of file ttkMergeTreeTemporalReductionEncoding.h.

Constructor & Destructor Documentation

◆ ttkMergeTreeTemporalReductionEncoding()

ttkMergeTreeTemporalReductionEncoding::ttkMergeTreeTemporalReductionEncoding ( )
protected

Implement the filter constructor and destructor (see cpp file)

The constructor has to specify the number of input and output ports with the functions SetNumberOfInputPorts and SetNumberOfOutputPorts, respectively. It should also set default values for all filter parameters.

The destructor is usually empty unless you want to manage memory explicitly, by for example allocating memory on the heap that needs to be freed when the filter is destroyed.

Definition at line 35 of file ttkMergeTreeTemporalReductionEncoding.cpp.

◆ ~ttkMergeTreeTemporalReductionEncoding()

ttkMergeTreeTemporalReductionEncoding::~ttkMergeTreeTemporalReductionEncoding ( )
overrideprotecteddefault

Member Function Documentation

◆ FillInputPortInformation()

int ttkMergeTreeTemporalReductionEncoding::FillInputPortInformation ( int  port,
vtkInformation *  info 
)
overrideprotected

Specify the input data type of each input port (see cpp file)

This method specifies the required input object data types of the filter by adding the vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE() key to the port information.

Definition at line 48 of file ttkMergeTreeTemporalReductionEncoding.cpp.

◆ FillOutputPortInformation()

int ttkMergeTreeTemporalReductionEncoding::FillOutputPortInformation ( int  port,
vtkInformation *  info 
)
overrideprotected

Specify the data object type of each output port (see cpp file)

This method specifies in the port information object the data type of the corresponding output objects. It is possible to either explicitly specify a type by adding a vtkDataObject::DATA_TYPE_NAME() key:

 info->Set( vtkDataObject::DATA_TYPE_NAME(), "vtkUnstructuredGrid" );

or to pass a type of an input port to an output port by adding the ttkAlgorithm::SAME_DATA_TYPE_AS_INPUT_PORT() key (see below).

Note: prior to the execution of the RequestData method the pipeline will initialize empty output data objects based on this information.

Definition at line 70 of file ttkMergeTreeTemporalReductionEncoding.cpp.

◆ GetAssignmentSolver()

int ttkMergeTreeTemporalReductionEncoding::GetAssignmentSolver ( )
inline

Definition at line 172 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ GetClassName()

virtual const char * ttkMergeTreeTemporalReductionEncoding::GetClassName ( )
virtual

Reimplemented from ttkAlgorithm.

◆ GetEpsilon1UseFarthestSaddle()

bool ttkMergeTreeTemporalReductionEncoding::GetEpsilon1UseFarthestSaddle ( )
inline

Definition at line 108 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ GetRemovalPercentage()

double ttkMergeTreeTemporalReductionEncoding::GetRemovalPercentage ( )
inline

Definition at line 181 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ GetTimeVariableName()

virtual std::string ttkMergeTreeTemporalReductionEncoding::GetTimeVariableName ( )
virtual

◆ GetUseCustomTimeVariable()

bool ttkMergeTreeTemporalReductionEncoding::GetUseCustomTimeVariable ( )
inline

Definition at line 199 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ GetUseL2Distance()

double ttkMergeTreeTemporalReductionEncoding::GetUseL2Distance ( )
inline

Definition at line 190 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ IsA()

virtual int ttkMergeTreeTemporalReductionEncoding::IsA ( const char *  type)
virtual

Reimplemented from ttkAlgorithm.

◆ IsTypeOf()

static int ttkMergeTreeTemporalReductionEncoding::IsTypeOf ( const char *  type)
static

◆ New()

static ttkMergeTreeTemporalReductionEncoding * ttkMergeTreeTemporalReductionEncoding::New ( )
static

This static method and the macro below are VTK conventions on how to instantiate VTK objects. You don't have to modify this.

◆ RequestData()

int ttkMergeTreeTemporalReductionEncoding::RequestData ( vtkInformation *  request,
vtkInformationVector **  inputVector,
vtkInformationVector *  outputVector 
)
overrideprotected

Pass VTK data to the base code and convert base code output to VTK (see cpp file)

This method is called during the pipeline execution to update the already initialized output data objects based on the given input data objects and filter parameters.

Note: 1) The passed input data objects are validated based on the information provided by the FillInputPortInformation method. 2) The output objects are already initialized based on the information provided by the FillOutputPortInformation method.

Definition at line 92 of file ttkMergeTreeTemporalReductionEncoding.cpp.

◆ run()

template<class dataType >
int ttkMergeTreeTemporalReductionEncoding::run ( vtkInformationVector *  outputVector,
std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees 
)
protected

Definition at line 119 of file ttkMergeTreeTemporalReductionEncoding.cpp.

◆ runCompute()

template<class dataType >
int ttkMergeTreeTemporalReductionEncoding::runCompute ( std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees)
protected

Definition at line 156 of file ttkMergeTreeTemporalReductionEncoding.cpp.

◆ runOutput()

template<class dataType >
int ttkMergeTreeTemporalReductionEncoding::runOutput ( vtkInformationVector *  outputVector,
std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees 
)
protected

Definition at line 224 of file ttkMergeTreeTemporalReductionEncoding.cpp.

◆ SafeDownCast()

static ttkMergeTreeTemporalReductionEncoding * ttkMergeTreeTemporalReductionEncoding::SafeDownCast ( vtkObject *  o)
static

◆ SetAssignmentSolver()

void ttkMergeTreeTemporalReductionEncoding::SetAssignmentSolver ( int  assignmentSolver)
inline

Definition at line 167 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetDeleteMultiPersPairs() [1/2]

bool ttkMergeTreeTemporalReductionEncoding::SetDeleteMultiPersPairs ( )
inline

Definition at line 162 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetDeleteMultiPersPairs() [2/2]

void ttkMergeTreeTemporalReductionEncoding::SetDeleteMultiPersPairs ( bool  doDelete)
inline

Definition at line 157 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetEpsilon1UseFarthestSaddle()

void ttkMergeTreeTemporalReductionEncoding::SetEpsilon1UseFarthestSaddle ( bool  epsilon1UseFarthestSaddle)
inline

Automatically generate getters and setters of filter parameters via vtkMacros.

Definition at line 103 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetEpsilon2Tree1() [1/2]

double ttkMergeTreeTemporalReductionEncoding::SetEpsilon2Tree1 ( )
inline

Definition at line 126 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetEpsilon2Tree1() [2/2]

void ttkMergeTreeTemporalReductionEncoding::SetEpsilon2Tree1 ( double  epsilon2Tree1)
inline

Definition at line 121 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetEpsilon3Tree1() [1/2]

double ttkMergeTreeTemporalReductionEncoding::SetEpsilon3Tree1 ( )
inline

Definition at line 135 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetEpsilon3Tree1() [2/2]

void ttkMergeTreeTemporalReductionEncoding::SetEpsilon3Tree1 ( double  epsilon3Tree1)
inline

Definition at line 130 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetEpsilonTree1() [1/2]

double ttkMergeTreeTemporalReductionEncoding::SetEpsilonTree1 ( )
inline

Definition at line 117 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetEpsilonTree1() [2/2]

void ttkMergeTreeTemporalReductionEncoding::SetEpsilonTree1 ( double  epsilonTree1)
inline

Definition at line 112 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetPersistenceThreshold() [1/2]

double ttkMergeTreeTemporalReductionEncoding::SetPersistenceThreshold ( )
inline

Definition at line 144 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetPersistenceThreshold() [2/2]

void ttkMergeTreeTemporalReductionEncoding::SetPersistenceThreshold ( double  persistenceThreshold)
inline

Definition at line 139 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetRemovalPercentage()

void ttkMergeTreeTemporalReductionEncoding::SetRemovalPercentage ( double  removePerc)
inline

Definition at line 176 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetTimeVariableName()

void ttkMergeTreeTemporalReductionEncoding::SetTimeVariableName ( int  idx,
int  port,
int  connection,
int  fieldAssociation,
const char *  name 
)
inline

Definition at line 203 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetUseCustomTimeVariable()

void ttkMergeTreeTemporalReductionEncoding::SetUseCustomTimeVariable ( bool  useCustomTime)
inline

Definition at line 194 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetUseL2Distance()

void ttkMergeTreeTemporalReductionEncoding::SetUseL2Distance ( double  useL2)
inline

Definition at line 185 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetUseMinMaxPair() [1/2]

bool ttkMergeTreeTemporalReductionEncoding::SetUseMinMaxPair ( )
inline

Definition at line 153 of file ttkMergeTreeTemporalReductionEncoding.h.

◆ SetUseMinMaxPair() [2/2]

void ttkMergeTreeTemporalReductionEncoding::SetUseMinMaxPair ( bool  useMinMaxPair)
inline

Definition at line 148 of file ttkMergeTreeTemporalReductionEncoding.h.


The documentation for this class was generated from the following files: