TTK
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This is the complete list of members for ttkDimensionReduction, including all inherited members.
AddInputData(vtkDataSet *) | ttkAlgorithm | |
AddInputData(int, vtkDataSet *) | ttkAlgorithm | |
BaseClass() | ttk::BaseClass | |
checkEmptyMPIInput(inputType *input) | ttkAlgorithm | inline |
checkForGlobalAndComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx) | ttkAlgorithm | |
checkGlobalIdValidity(ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray) | ttkAlgorithm | protected |
ClearScalarFields() | ttkDimensionReduction | inline |
CompactTriangulationCacheSize | ttkAlgorithm | protected |
ComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation) | ttkAlgorithm | |
Debug() | ttk::Debug | |
debugLevel_ | ttk::Debug | mutableprotected |
debugMsgNamePrefix_ | ttk::Debug | protected |
debugMsgPrefix_ | ttk::Debug | protected |
DimensionReduction() | ttk::DimensionReduction | protected |
execute(std::vector< std::vector< double > > &outputEmbedding, const std::vector< double > &inputMatrix, const int nRows, const int nColumns, int *insertionTimeForTopoMap=nullptr) const | ttk::DimensionReduction | protected |
FillInputPortInformation(int port, vtkInformation *info) override | ttkDimensionReduction | protected |
ttkAlgorithm::FillInputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
FillOutputPortInformation(int port, vtkInformation *info) override | ttkDimensionReduction | protected |
ttkAlgorithm::FillOutputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
FunctionName | ttk::DimensionReduction | protected |
GenerateGlobalIds(vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId) | ttkAlgorithm | protected |
GetClassName() | ttkDimensionReduction | virtual |
GetFunctionName() | ttkDimensionReduction | virtual |
GetIdentifierArrayPtr(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true) | ttkAlgorithm | |
GetInputIsADistanceMatrix() | ttkDimensionReduction | virtual |
GetIsDeterministic() | ttkDimensionReduction | virtual |
Getiso_EigenSolver() | ttkDimensionReduction | virtual |
Getiso_MaxIteration() | ttkDimensionReduction | virtual |
Getiso_Metric() | ttkDimensionReduction | virtual |
Getiso_NeighborsAlgorithm() | ttkDimensionReduction | virtual |
Getiso_PathMethod() | ttkDimensionReduction | virtual |
Getiso_Tolerance() | ttkDimensionReduction | virtual |
GetKeepAllDataArrays() | ttkDimensionReduction | virtual |
Getlle_EigenSolver() | ttkDimensionReduction | virtual |
Getlle_HessianTolerance() | ttkDimensionReduction | virtual |
Getlle_MaxIteration() | ttkDimensionReduction | virtual |
Getlle_Method() | ttkDimensionReduction | virtual |
Getlle_ModifiedTolerance() | ttkDimensionReduction | virtual |
Getlle_NeighborsAlgorithm() | ttkDimensionReduction | virtual |
Getlle_Regularization() | ttkDimensionReduction | virtual |
Getlle_Tolerance() | ttkDimensionReduction | virtual |
Getmds_Epsilon() | ttkDimensionReduction | virtual |
Getmds_Init() | ttkDimensionReduction | virtual |
Getmds_MaxIteration() | ttkDimensionReduction | virtual |
Getmds_Metric() | ttkDimensionReduction | virtual |
Getmds_Verbose() | ttkDimensionReduction | virtual |
GetMethod() const | ttkDimensionReduction | virtual |
GetModuleName() | ttkDimensionReduction | virtual |
GetModulePath() | ttkDimensionReduction | virtual |
GetNumberOfComponents() | ttkDimensionReduction | virtual |
GetNumberOfNeighbors() | ttkDimensionReduction | virtual |
GetOptionalArray(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0) | ttkAlgorithm | |
GetOrderArray(vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false) | ttkAlgorithm | |
GetOrderArrayName(vtkDataArray *const array) | ttkAlgorithm | static |
GetOutput() | ttkAlgorithm | |
GetOutput(int) | ttkAlgorithm | |
Getpca_Copy() | ttkDimensionReduction | virtual |
Getpca_MaxIteration() | ttkDimensionReduction | virtual |
Getpca_SVDSolver() | ttkDimensionReduction | virtual |
Getpca_Tolerance() | ttkDimensionReduction | virtual |
Getpca_Whiten() | ttkDimensionReduction | virtual |
GetRegexpString() | ttkDimensionReduction | virtual |
Getse_Affinity() | ttkDimensionReduction | virtual |
Getse_EigenSolver() | ttkDimensionReduction | virtual |
Getse_Gamma() | ttkDimensionReduction | virtual |
GetSelectFieldsWithRegexp() | ttkDimensionReduction | virtual |
getThreadNumber() const | ttk::BaseClass | inline |
Gettopomap_AngularSampleNb() | ttkDimensionReduction | virtual |
Gettopomap_CheckMST() | ttkDimensionReduction | virtual |
Gettopomap_Strategy() const | ttkDimensionReduction | virtual |
GetTriangulation(vtkDataSet *dataSet) | ttkAlgorithm | |
Gettsne_Angle() | ttkDimensionReduction | virtual |
Gettsne_Exaggeration() | ttkDimensionReduction | virtual |
Gettsne_GradientThreshold() | ttkDimensionReduction | virtual |
Gettsne_Init() | ttkDimensionReduction | virtual |
Gettsne_LearningRate() | ttkDimensionReduction | virtual |
Gettsne_MaxIteration() | ttkDimensionReduction | virtual |
Gettsne_MaxIterationProgress() | ttkDimensionReduction | virtual |
Gettsne_Method() | ttkDimensionReduction | virtual |
Gettsne_Metric() | ttkDimensionReduction | virtual |
Gettsne_Perplexity() | ttkDimensionReduction | virtual |
Gettsne_Verbose() | ttkDimensionReduction | virtual |
IsA(const char *type) | ttkDimensionReduction | virtual |
IsDeterministic | ttk::DimensionReduction | protected |
IsInputADistanceMatrix | ttk::DimensionReduction | protected |
iso_EigenSolver | ttk::DimensionReduction | protected |
iso_MaxIteration | ttk::DimensionReduction | protected |
iso_Metric | ttk::DimensionReduction | protected |
iso_NeighborsAlgorithm | ttk::DimensionReduction | protected |
iso_PathMethod | ttk::DimensionReduction | protected |
iso_Tolerance | ttk::DimensionReduction | protected |
IsTypeOf(const char *type) | ttkDimensionReduction | static |
lastLineMode | ttk::Debug | protectedstatic |
lastObject_ | ttk::BaseClass | protected |
lle_EigenSolver | ttk::DimensionReduction | protected |
lle_HessianTolerance | ttk::DimensionReduction | protected |
lle_MaxIteration | ttk::DimensionReduction | protected |
lle_Method | ttk::DimensionReduction | protected |
lle_ModifiedTolerance | ttk::DimensionReduction | protected |
lle_NeighborsAlgorithm | ttk::DimensionReduction | protected |
lle_Regularization | ttk::DimensionReduction | protected |
lle_Tolerance | ttk::DimensionReduction | protected |
majorVersion_ | ttk::DimensionReduction | protected |
mds_Dissimilarity | ttk::DimensionReduction | protected |
mds_Epsilon | ttk::DimensionReduction | protected |
mds_Init | ttk::DimensionReduction | protected |
mds_MaxIteration | ttk::DimensionReduction | protected |
mds_Metric | ttk::DimensionReduction | protected |
mds_Verbose | ttk::DimensionReduction | protected |
Method | ttk::DimensionReduction | protected |
METHOD enum name | ttk::DimensionReduction | protected |
ModuleName | ttk::DimensionReduction | protected |
ModulePath | ttk::DimensionReduction | protected |
MPIGhostPipelinePreconditioning(vtkDataSet *input) | ttkAlgorithm | protected |
MPIPipelinePreconditioning(vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr) | ttkAlgorithm | protected |
MPITriangulationPreconditioning(ttk::Triangulation *triangulation, vtkDataSet *input) | ttkAlgorithm | protected |
New() | ttkDimensionReduction | static |
NumberOfComponents | ttk::DimensionReduction | protected |
NumberOfNeighbors | ttk::DimensionReduction | protected |
pca_Copy | ttk::DimensionReduction | protected |
pca_MaxIteration | ttk::DimensionReduction | protected |
pca_SVDSolver | ttk::DimensionReduction | protected |
pca_Tolerance | ttk::DimensionReduction | protected |
pca_Whiten | ttk::DimensionReduction | protected |
printErr(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
printMsg(const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsg(const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
printMsgInternal(const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
printMsgInternal(const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
printWrn(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
ProcessRequest(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override | ttkAlgorithm | |
RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override | ttkDimensionReduction | protected |
ttkAlgorithm::RequestData(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
RequestDataNotGenerated(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
RequestDataObject(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) | ttkAlgorithm | protectedvirtual |
RequestInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
RequestUpdateExtent(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
RequestUpdateTime(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
RequestUpdateTimeDependentInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
SafeDownCast(vtkObject *o) | ttkDimensionReduction | static |
SAME_DATA_TYPE_AS_INPUT_PORT() | ttkAlgorithm | static |
se_Affinity | ttk::DimensionReduction | protected |
se_EigenSolver | ttk::DimensionReduction | protected |
se_Gamma | ttk::DimensionReduction | protected |
SetCompactTriangulationCacheSize(float cacheSize) | ttkAlgorithm | inline |
SetDebugLevel(int debugLevel) | ttkAlgorithm | inline |
setDebugLevel(const int &debugLevel) | ttk::Debug | virtual |
setDebugMsgPrefix(const std::string &prefix) | ttk::Debug | inline |
SetFunctionName(const std::string &) | ttkDimensionReduction | virtual |
SetInputData(vtkDataSet *) | ttkAlgorithm | |
SetInputData(int, vtkDataSet *) | ttkAlgorithm | |
setInputFunctionName(const std::string &functionName) | ttk::DimensionReduction | inlineprotected |
SetInputIsADistanceMatrix(const bool b) | ttkDimensionReduction | inline |
setInputIsDeterministic(const int isDeterm) | ttk::DimensionReduction | inlineprotected |
setInputMethod(METHOD method) | ttk::DimensionReduction | inlineprotected |
setInputModuleName(const std::string &moduleName) | ttk::DimensionReduction | inlineprotected |
setInputModulePath(const std::string &modulePath) | ttk::DimensionReduction | inlineprotected |
setInputNumberOfComponents(const int numberOfComponents) | ttk::DimensionReduction | inlineprotected |
setInputNumberOfNeighbors(const int numberOfNeighbors) | ttk::DimensionReduction | inlineprotected |
SetIsDeterministic(int) | ttkDimensionReduction | virtual |
setIsInputDistanceMatrix(const bool data) | ttk::DimensionReduction | inlineprotected |
Setiso_EigenSolver(const std::string &) | ttkDimensionReduction | virtual |
Setiso_MaxIteration(int) | ttkDimensionReduction | virtual |
Setiso_Metric(const std::string &) | ttkDimensionReduction | virtual |
Setiso_NeighborsAlgorithm(const std::string &) | ttkDimensionReduction | virtual |
Setiso_PathMethod(const std::string &) | ttkDimensionReduction | virtual |
Setiso_Tolerance(float) | ttkDimensionReduction | virtual |
setISOParameters(const std::string &EigenSolver, const float Tolerance, const int MaxIteration, const std::string &PathMethod, const std::string &NeighborsAlgorithm) | ttk::DimensionReduction | inlineprotected |
SetKeepAllDataArrays(bool) | ttkDimensionReduction | virtual |
Setlle_EigenSolver(const std::string &) | ttkDimensionReduction | virtual |
Setlle_HessianTolerance(float) | ttkDimensionReduction | virtual |
Setlle_MaxIteration(int) | ttkDimensionReduction | virtual |
Setlle_Method(const std::string &) | ttkDimensionReduction | virtual |
Setlle_ModifiedTolerance(float) | ttkDimensionReduction | virtual |
Setlle_NeighborsAlgorithm(const std::string &) | ttkDimensionReduction | virtual |
Setlle_Regularization(float) | ttkDimensionReduction | virtual |
Setlle_Tolerance(float) | ttkDimensionReduction | virtual |
setLLEParameters(const float Regularization, const std::string &EigenSolver, const float Tolerance, const int MaxIteration, const std::string &Method_s, const float HessianTolerance, const float ModifiedTolerance, const std::string &NeighborsAlgorithm) | ttk::DimensionReduction | inlineprotected |
Setmds_Epsilon(float) | ttkDimensionReduction | virtual |
Setmds_Init(int) | ttkDimensionReduction | virtual |
Setmds_MaxIteration(int) | ttkDimensionReduction | virtual |
Setmds_Metric(bool) | ttkDimensionReduction | virtual |
Setmds_Verbose(int) | ttkDimensionReduction | virtual |
setMDSParameters(const bool Metric, const int Init, const int MaxIteration, const int Verbose, const float Epsilon, const bool Dissimilarity) | ttk::DimensionReduction | inlineprotected |
SetMethod(int _arg) | ttkDimensionReduction | virtual |
SetMethod(METHOD) | ttkDimensionReduction | virtual |
SetModuleName(const std::string &) | ttkDimensionReduction | virtual |
SetModulePath(const std::string &) | ttkDimensionReduction | virtual |
SetNumberOfComponents(int) | ttkDimensionReduction | virtual |
SetNumberOfNeighbors(int) | ttkDimensionReduction | virtual |
Setpca_Copy(bool) | ttkDimensionReduction | virtual |
Setpca_MaxIteration(const std::string &) | ttkDimensionReduction | virtual |
Setpca_SVDSolver(const std::string &) | ttkDimensionReduction | virtual |
Setpca_Tolerance(float) | ttkDimensionReduction | virtual |
Setpca_Whiten(bool) | ttkDimensionReduction | virtual |
setPCAParameters(const bool Copy, const bool Whiten, const std::string &SVDSolver, const float Tolerance, const std::string &MaxIteration) | ttk::DimensionReduction | inlineprotected |
SetRegexpString(const std::string &) | ttkDimensionReduction | virtual |
SetScalarFields(const std::string &s) | ttkDimensionReduction | inline |
Setse_Affinity(const std::string &) | ttkDimensionReduction | virtual |
Setse_EigenSolver(const std::string &) | ttkDimensionReduction | virtual |
Setse_Gamma(float) | ttkDimensionReduction | virtual |
SetSelectFieldsWithRegexp(bool) | ttkDimensionReduction | virtual |
setSEParameters(const std::string &Affinity, const float Gamma, const std::string &EigenSolver, const bool InputIsADistanceMatrix) | ttk::DimensionReduction | inlineprotected |
SetThreadNumber(int threadNumber) | ttkAlgorithm | inline |
setThreadNumber(const int threadNumber) | ttk::BaseClass | inlinevirtual |
Settopomap_AngularSampleNb(unsigned long int) | ttkDimensionReduction | virtual |
Settopomap_CheckMST(bool) | ttkDimensionReduction | virtual |
Settopomap_Strategy(int _arg) | ttkDimensionReduction | virtual |
Settopomap_Strategy(ttk::TopoMap::STRATEGY) | ttkDimensionReduction | virtual |
setTopoParameters(const size_t AngularSampleNb, bool CheckMST) | ttk::DimensionReduction | inlineprotected |
Settsne_Angle(float) | ttkDimensionReduction | virtual |
Settsne_Exaggeration(float) | ttkDimensionReduction | virtual |
Settsne_GradientThreshold(float) | ttkDimensionReduction | virtual |
Settsne_Init(const std::string &) | ttkDimensionReduction | virtual |
Settsne_LearningRate(float) | ttkDimensionReduction | virtual |
Settsne_MaxIteration(int) | ttkDimensionReduction | virtual |
Settsne_MaxIterationProgress(int) | ttkDimensionReduction | virtual |
Settsne_Method(const std::string &) | ttkDimensionReduction | virtual |
Settsne_Metric(const std::string &) | ttkDimensionReduction | virtual |
Settsne_Perplexity(float) | ttkDimensionReduction | virtual |
Settsne_Verbose(int) | ttkDimensionReduction | virtual |
setTSNEParameters(const float Perplexity, const float Exaggeration, const float LearningRate, const int MaxIteration, const int MaxIterationProgress, const float GradientThreshold, const std::string &Metric, const std::string &Init, const int Verbose, const std::string &Method_s, const float Angle) | ttk::DimensionReduction | inlineprotected |
SetUseAllCores(bool useAllCores) | ttkAlgorithm | inline |
setWrapper(const Wrapper *wrapper) override | ttk::Debug | virtual |
Superclass typedef | ttkDimensionReduction | |
threadNumber_ | ttk::BaseClass | mutableprotected |
topomap_AngularSampleNb | ttk::DimensionReduction | protected |
topomap_CheckMST | ttk::DimensionReduction | protected |
topomap_Strategy | ttk::DimensionReduction | protected |
tsne_Angle | ttk::DimensionReduction | protected |
tsne_Exaggeration | ttk::DimensionReduction | protected |
tsne_GradientThreshold | ttk::DimensionReduction | protected |
tsne_Init | ttk::DimensionReduction | protected |
tsne_LearningRate | ttk::DimensionReduction | protected |
tsne_MaxIteration | ttk::DimensionReduction | protected |
tsne_MaxIterationProgress | ttk::DimensionReduction | protected |
tsne_Method | ttk::DimensionReduction | protected |
tsne_Metric | ttk::DimensionReduction | protected |
tsne_Perplexity | ttk::DimensionReduction | protected |
tsne_Verbose | ttk::DimensionReduction | protected |
ttkAlgorithm() | ttkAlgorithm | protected |
ttkDimensionReduction() | ttkDimensionReduction | protected |
UpdateThreadNumber() | ttkAlgorithm | inline |
welcomeMsg(std::ostream &stream) | ttk::Debug | protected |
wrapper_ | ttk::BaseClass | protected |
~BaseClass()=default | ttk::BaseClass | virtual |
~Debug() override | ttk::Debug | |
~ttkAlgorithm() override | ttkAlgorithm | protected |