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ttkDimensionReduction Member List

This is the complete list of members for ttkDimensionReduction, including all inherited members.

AddInputData(vtkDataSet *)ttkAlgorithm
AddInputData(int, vtkDataSet *)ttkAlgorithm
BaseClass()ttk::BaseClass
checkEmptyMPIInput(inputType *input)ttkAlgorithminline
checkForGlobalAndComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx)ttkAlgorithm
checkGlobalIdValidity(ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray)ttkAlgorithmprotected
ClearScalarFields()ttkDimensionReductioninline
CompactTriangulationCacheSizettkAlgorithmprotected
ComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation)ttkAlgorithm
Debug()ttk::Debug
debugLevel_ttk::Debugmutableprotected
debugMsgNamePrefix_ttk::Debugprotected
debugMsgPrefix_ttk::Debugprotected
DimensionReduction()ttk::DimensionReductionprotected
execute(std::vector< std::vector< double > > &outputEmbedding, const std::vector< double > &inputMatrix, const int nRows, const int nColumns, int *insertionTimeForTopoMap=nullptr) constttk::DimensionReductionprotected
FillInputPortInformation(int port, vtkInformation *info) overridettkDimensionReductionprotected
ttkAlgorithm::FillInputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) overridettkAlgorithminlineprotected
FillOutputPortInformation(int port, vtkInformation *info) overridettkDimensionReductionprotected
ttkAlgorithm::FillOutputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) overridettkAlgorithminlineprotected
FunctionNamettk::DimensionReductionprotected
GenerateGlobalIds(vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)ttkAlgorithmprotected
GetClassName()ttkDimensionReductionvirtual
GetFunctionName()ttkDimensionReductionvirtual
GetIdentifierArrayPtr(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)ttkAlgorithm
GetInputIsADistanceMatrix()ttkDimensionReductionvirtual
GetIsDeterministic()ttkDimensionReductionvirtual
Getiso_EigenSolver()ttkDimensionReductionvirtual
Getiso_MaxIteration()ttkDimensionReductionvirtual
Getiso_Metric()ttkDimensionReductionvirtual
Getiso_NeighborsAlgorithm()ttkDimensionReductionvirtual
Getiso_PathMethod()ttkDimensionReductionvirtual
Getiso_Tolerance()ttkDimensionReductionvirtual
GetKeepAllDataArrays()ttkDimensionReductionvirtual
Getlle_EigenSolver()ttkDimensionReductionvirtual
Getlle_HessianTolerance()ttkDimensionReductionvirtual
Getlle_MaxIteration()ttkDimensionReductionvirtual
Getlle_Method()ttkDimensionReductionvirtual
Getlle_ModifiedTolerance()ttkDimensionReductionvirtual
Getlle_NeighborsAlgorithm()ttkDimensionReductionvirtual
Getlle_Regularization()ttkDimensionReductionvirtual
Getlle_Tolerance()ttkDimensionReductionvirtual
Getmds_Epsilon()ttkDimensionReductionvirtual
Getmds_Init()ttkDimensionReductionvirtual
Getmds_MaxIteration()ttkDimensionReductionvirtual
Getmds_Metric()ttkDimensionReductionvirtual
Getmds_Verbose()ttkDimensionReductionvirtual
GetMethod() constttkDimensionReductionvirtual
GetModuleName()ttkDimensionReductionvirtual
GetModulePath()ttkDimensionReductionvirtual
GetNumberOfComponents()ttkDimensionReductionvirtual
GetNumberOfNeighbors()ttkDimensionReductionvirtual
GetOptionalArray(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)ttkAlgorithm
GetOrderArray(vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)ttkAlgorithm
GetOrderArrayName(vtkDataArray *const array)ttkAlgorithmstatic
GetOutput()ttkAlgorithm
GetOutput(int)ttkAlgorithm
Getpca_Copy()ttkDimensionReductionvirtual
Getpca_MaxIteration()ttkDimensionReductionvirtual
Getpca_SVDSolver()ttkDimensionReductionvirtual
Getpca_Tolerance()ttkDimensionReductionvirtual
Getpca_Whiten()ttkDimensionReductionvirtual
GetRegexpString()ttkDimensionReductionvirtual
Getse_Affinity()ttkDimensionReductionvirtual
Getse_EigenSolver()ttkDimensionReductionvirtual
Getse_Gamma()ttkDimensionReductionvirtual
GetSelectFieldsWithRegexp()ttkDimensionReductionvirtual
getThreadNumber() constttk::BaseClassinline
Gettopomap_AngularSampleNb()ttkDimensionReductionvirtual
Gettopomap_CheckMST()ttkDimensionReductionvirtual
Gettopomap_Strategy() constttkDimensionReductionvirtual
GetTriangulation(vtkDataSet *dataSet)ttkAlgorithm
Gettsne_Angle()ttkDimensionReductionvirtual
Gettsne_Exaggeration()ttkDimensionReductionvirtual
Gettsne_GradientThreshold()ttkDimensionReductionvirtual
Gettsne_Init()ttkDimensionReductionvirtual
Gettsne_LearningRate()ttkDimensionReductionvirtual
Gettsne_MaxIteration()ttkDimensionReductionvirtual
Gettsne_MaxIterationProgress()ttkDimensionReductionvirtual
Gettsne_Method()ttkDimensionReductionvirtual
Gettsne_Metric()ttkDimensionReductionvirtual
Gettsne_Perplexity()ttkDimensionReductionvirtual
Gettsne_Verbose()ttkDimensionReductionvirtual
IsA(const char *type)ttkDimensionReductionvirtual
IsDeterministicttk::DimensionReductionprotected
IsInputADistanceMatrixttk::DimensionReductionprotected
iso_EigenSolverttk::DimensionReductionprotected
iso_MaxIterationttk::DimensionReductionprotected
iso_Metricttk::DimensionReductionprotected
iso_NeighborsAlgorithmttk::DimensionReductionprotected
iso_PathMethodttk::DimensionReductionprotected
iso_Tolerancettk::DimensionReductionprotected
IsTypeOf(const char *type)ttkDimensionReductionstatic
lastLineModettk::Debugprotectedstatic
lastObject_ttk::BaseClassprotected
lle_EigenSolverttk::DimensionReductionprotected
lle_HessianTolerancettk::DimensionReductionprotected
lle_MaxIterationttk::DimensionReductionprotected
lle_Methodttk::DimensionReductionprotected
lle_ModifiedTolerancettk::DimensionReductionprotected
lle_NeighborsAlgorithmttk::DimensionReductionprotected
lle_Regularizationttk::DimensionReductionprotected
lle_Tolerancettk::DimensionReductionprotected
majorVersion_ttk::DimensionReductionprotected
mds_Dissimilarityttk::DimensionReductionprotected
mds_Epsilonttk::DimensionReductionprotected
mds_Initttk::DimensionReductionprotected
mds_MaxIterationttk::DimensionReductionprotected
mds_Metricttk::DimensionReductionprotected
mds_Verbosettk::DimensionReductionprotected
Methodttk::DimensionReductionprotected
METHOD enum namettk::DimensionReductionprotected
ModuleNamettk::DimensionReductionprotected
ModulePathttk::DimensionReductionprotected
MPIGhostPipelinePreconditioning(vtkDataSet *input)ttkAlgorithmprotected
MPIPipelinePreconditioning(vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr)ttkAlgorithmprotected
MPITriangulationPreconditioning(ttk::Triangulation *triangulation, vtkDataSet *input)ttkAlgorithmprotected
New()ttkDimensionReductionstatic
NumberOfComponentsttk::DimensionReductionprotected
NumberOfNeighborsttk::DimensionReductionprotected
pca_Copyttk::DimensionReductionprotected
pca_MaxIterationttk::DimensionReductionprotected
pca_SVDSolverttk::DimensionReductionprotected
pca_Tolerancettk::DimensionReductionprotected
pca_Whitenttk::DimensionReductionprotected
printErr(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) constttk::Debuginline
printMsg(const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) constttk::Debuginline
printMsgInternal(const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginlineprotected
printMsgInternal(const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) constttk::Debuginlineprotected
printWrn(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) constttk::Debuginline
ProcessRequest(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) overridettkAlgorithm
RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) overridettkDimensionReductionprotected
ttkAlgorithm::RequestData(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))ttkAlgorithminlineprotectedvirtual
RequestDataNotGenerated(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))ttkAlgorithminlineprotectedvirtual
RequestDataObject(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector)ttkAlgorithmprotectedvirtual
RequestInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))ttkAlgorithminlineprotectedvirtual
RequestUpdateExtent(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))ttkAlgorithminlineprotectedvirtual
RequestUpdateTime(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))ttkAlgorithminlineprotectedvirtual
RequestUpdateTimeDependentInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))ttkAlgorithminlineprotectedvirtual
SafeDownCast(vtkObject *o)ttkDimensionReductionstatic
SAME_DATA_TYPE_AS_INPUT_PORT()ttkAlgorithmstatic
se_Affinityttk::DimensionReductionprotected
se_EigenSolverttk::DimensionReductionprotected
se_Gammattk::DimensionReductionprotected
SetCompactTriangulationCacheSize(float cacheSize)ttkAlgorithminline
SetDebugLevel(int debugLevel)ttkAlgorithminline
setDebugLevel(const int &debugLevel)ttk::Debugvirtual
setDebugMsgPrefix(const std::string &prefix)ttk::Debuginline
SetFunctionName(const std::string &)ttkDimensionReductionvirtual
SetInputData(vtkDataSet *)ttkAlgorithm
SetInputData(int, vtkDataSet *)ttkAlgorithm
setInputFunctionName(const std::string &functionName)ttk::DimensionReductioninlineprotected
SetInputIsADistanceMatrix(const bool b)ttkDimensionReductioninline
setInputIsDeterministic(const int isDeterm)ttk::DimensionReductioninlineprotected
setInputMethod(METHOD method)ttk::DimensionReductioninlineprotected
setInputModuleName(const std::string &moduleName)ttk::DimensionReductioninlineprotected
setInputModulePath(const std::string &modulePath)ttk::DimensionReductioninlineprotected
setInputNumberOfComponents(const int numberOfComponents)ttk::DimensionReductioninlineprotected
setInputNumberOfNeighbors(const int numberOfNeighbors)ttk::DimensionReductioninlineprotected
SetIsDeterministic(int)ttkDimensionReductionvirtual
setIsInputDistanceMatrix(const bool data)ttk::DimensionReductioninlineprotected
Setiso_EigenSolver(const std::string &)ttkDimensionReductionvirtual
Setiso_MaxIteration(int)ttkDimensionReductionvirtual
Setiso_Metric(const std::string &)ttkDimensionReductionvirtual
Setiso_NeighborsAlgorithm(const std::string &)ttkDimensionReductionvirtual
Setiso_PathMethod(const std::string &)ttkDimensionReductionvirtual
Setiso_Tolerance(float)ttkDimensionReductionvirtual
setISOParameters(const std::string &EigenSolver, const float Tolerance, const int MaxIteration, const std::string &PathMethod, const std::string &NeighborsAlgorithm)ttk::DimensionReductioninlineprotected
SetKeepAllDataArrays(bool)ttkDimensionReductionvirtual
Setlle_EigenSolver(const std::string &)ttkDimensionReductionvirtual
Setlle_HessianTolerance(float)ttkDimensionReductionvirtual
Setlle_MaxIteration(int)ttkDimensionReductionvirtual
Setlle_Method(const std::string &)ttkDimensionReductionvirtual
Setlle_ModifiedTolerance(float)ttkDimensionReductionvirtual
Setlle_NeighborsAlgorithm(const std::string &)ttkDimensionReductionvirtual
Setlle_Regularization(float)ttkDimensionReductionvirtual
Setlle_Tolerance(float)ttkDimensionReductionvirtual
setLLEParameters(const float Regularization, const std::string &EigenSolver, const float Tolerance, const int MaxIteration, const std::string &Method_s, const float HessianTolerance, const float ModifiedTolerance, const std::string &NeighborsAlgorithm)ttk::DimensionReductioninlineprotected
Setmds_Epsilon(float)ttkDimensionReductionvirtual
Setmds_Init(int)ttkDimensionReductionvirtual
Setmds_MaxIteration(int)ttkDimensionReductionvirtual
Setmds_Metric(bool)ttkDimensionReductionvirtual
Setmds_Verbose(int)ttkDimensionReductionvirtual
setMDSParameters(const bool Metric, const int Init, const int MaxIteration, const int Verbose, const float Epsilon, const bool Dissimilarity)ttk::DimensionReductioninlineprotected
SetMethod(int _arg)ttkDimensionReductionvirtual
SetMethod(METHOD)ttkDimensionReductionvirtual
SetModuleName(const std::string &)ttkDimensionReductionvirtual
SetModulePath(const std::string &)ttkDimensionReductionvirtual
SetNumberOfComponents(int)ttkDimensionReductionvirtual
SetNumberOfNeighbors(int)ttkDimensionReductionvirtual
Setpca_Copy(bool)ttkDimensionReductionvirtual
Setpca_MaxIteration(const std::string &)ttkDimensionReductionvirtual
Setpca_SVDSolver(const std::string &)ttkDimensionReductionvirtual
Setpca_Tolerance(float)ttkDimensionReductionvirtual
Setpca_Whiten(bool)ttkDimensionReductionvirtual
setPCAParameters(const bool Copy, const bool Whiten, const std::string &SVDSolver, const float Tolerance, const std::string &MaxIteration)ttk::DimensionReductioninlineprotected
SetRegexpString(const std::string &)ttkDimensionReductionvirtual
SetScalarFields(const std::string &s)ttkDimensionReductioninline
Setse_Affinity(const std::string &)ttkDimensionReductionvirtual
Setse_EigenSolver(const std::string &)ttkDimensionReductionvirtual
Setse_Gamma(float)ttkDimensionReductionvirtual
SetSelectFieldsWithRegexp(bool)ttkDimensionReductionvirtual
setSEParameters(const std::string &Affinity, const float Gamma, const std::string &EigenSolver, const bool InputIsADistanceMatrix)ttk::DimensionReductioninlineprotected
SetThreadNumber(int threadNumber)ttkAlgorithminline
setThreadNumber(const int threadNumber)ttk::BaseClassinlinevirtual
Settopomap_AngularSampleNb(unsigned long int)ttkDimensionReductionvirtual
Settopomap_CheckMST(bool)ttkDimensionReductionvirtual
Settopomap_Strategy(int _arg)ttkDimensionReductionvirtual
Settopomap_Strategy(ttk::TopoMap::STRATEGY)ttkDimensionReductionvirtual
setTopoParameters(const size_t AngularSampleNb, bool CheckMST)ttk::DimensionReductioninlineprotected
Settsne_Angle(float)ttkDimensionReductionvirtual
Settsne_Exaggeration(float)ttkDimensionReductionvirtual
Settsne_GradientThreshold(float)ttkDimensionReductionvirtual
Settsne_Init(const std::string &)ttkDimensionReductionvirtual
Settsne_LearningRate(float)ttkDimensionReductionvirtual
Settsne_MaxIteration(int)ttkDimensionReductionvirtual
Settsne_MaxIterationProgress(int)ttkDimensionReductionvirtual
Settsne_Method(const std::string &)ttkDimensionReductionvirtual
Settsne_Metric(const std::string &)ttkDimensionReductionvirtual
Settsne_Perplexity(float)ttkDimensionReductionvirtual
Settsne_Verbose(int)ttkDimensionReductionvirtual
setTSNEParameters(const float Perplexity, const float Exaggeration, const float LearningRate, const int MaxIteration, const int MaxIterationProgress, const float GradientThreshold, const std::string &Metric, const std::string &Init, const int Verbose, const std::string &Method_s, const float Angle)ttk::DimensionReductioninlineprotected
SetUseAllCores(bool useAllCores)ttkAlgorithminline
setWrapper(const Wrapper *wrapper) overridettk::Debugvirtual
Superclass typedefttkDimensionReduction
threadNumber_ttk::BaseClassmutableprotected
topomap_AngularSampleNbttk::DimensionReductionprotected
topomap_CheckMSTttk::DimensionReductionprotected
topomap_Strategyttk::DimensionReductionprotected
tsne_Anglettk::DimensionReductionprotected
tsne_Exaggerationttk::DimensionReductionprotected
tsne_GradientThresholdttk::DimensionReductionprotected
tsne_Initttk::DimensionReductionprotected
tsne_LearningRatettk::DimensionReductionprotected
tsne_MaxIterationttk::DimensionReductionprotected
tsne_MaxIterationProgressttk::DimensionReductionprotected
tsne_Methodttk::DimensionReductionprotected
tsne_Metricttk::DimensionReductionprotected
tsne_Perplexityttk::DimensionReductionprotected
tsne_Verbosettk::DimensionReductionprotected
ttkAlgorithm()ttkAlgorithmprotected
ttkDimensionReduction()ttkDimensionReductionprotected
UpdateThreadNumber()ttkAlgorithminline
welcomeMsg(std::ostream &stream)ttk::Debugprotected
wrapper_ttk::BaseClassprotected
~BaseClass()=defaultttk::BaseClassvirtual
~Debug() overridettk::Debug
~ttkAlgorithm() overridettkAlgorithmprotected