ttkPersistenceDiagramDictionary Member List
This is the complete list of members for ttkPersistenceDiagramDictionary, including all inherited members.
| AddInputData(vtkDataSet *) | ttkAlgorithm | |
| AddInputData(int, vtkDataSet *) | ttkAlgorithm | |
| BACKEND enum name | ttk::PersistenceDiagramDictionary | protected |
| BackEnd | ttk::PersistenceDiagramDictionary | protected |
| BaseClass() | ttk::BaseClass | |
| checkEmptyMPIInput(inputType *input) | ttkAlgorithm | inline |
| checkForGlobalAndComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx) | ttkAlgorithm | |
| checkGlobalIdValidity(ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray) | ttkAlgorithm | protected |
| CompactTriangulationCacheSize | ttkAlgorithm | protected |
| CompressionFactor_ | ttk::PersistenceDiagramDictionary | protected |
| CompressionMode_ | ttk::PersistenceDiagramDictionary | protected |
| computeAllDistances(std::vector< ttk::DiagramType > &barycentersList, const size_t nDiag, std::vector< ttk::DiagramType > &barycentersListMin, std::vector< ttk::DiagramType > &barycentersListSad, std::vector< ttk::DiagramType > &barycentersListMax, std::vector< BidderDiagram > &bidderBarycentersListMin, std::vector< BidderDiagram > &bidderBarycentersListSad, std::vector< BidderDiagram > &bidderBarycentersListMax, std::vector< std::vector< size_t > > &originIndexBarysMin, std::vector< std::vector< size_t > > &originIndexBarysSad, std::vector< std::vector< size_t > > &originIndexBarysMax, std::vector< BidderDiagram > &bidderDiagramsMin, std::vector< BidderDiagram > &bidderDiagramsMax, std::vector< BidderDiagram > &bidderDiagramsSad, std::vector< std::vector< ttk::MatchingType > > &matchingsDatasMin, std::vector< std::vector< ttk::MatchingType > > &matchingsDatasMax, std::vector< std::vector< ttk::MatchingType > > &matchingsDatasSad, std::vector< double > &allLossesAtEpoch, bool firstDistComputation) const | ttk::PersistenceDiagramDictionary | protected |
| computeDirectionsGradAtoms(std::vector< Matrix > &gradsAtoms, const ttk::DiagramType &Barycenter, const std::vector< double > &weights, const ttk::DiagramType &newData, const std::vector< ttk::MatchingType > &matchingsCritType, const std::vector< size_t > &indexBaryCritType, const std::vector< size_t > &indexDataCritType, std::vector< std::vector< std::array< double, 2 > > > &pairToAddGradList, std::vector< std::vector< double > > &directions, std::vector< int > &checker, std::vector< PersistencePair > &infoToAdd, const bool doOptimizeAtoms) const | ttk::PersistenceDiagramDictionary | protected |
| computeDirectionsGradWeight(const std::vector< std::vector< ttk::MatchingType > > &matchingsAtoms, const ttk::DiagramType &Barycenter, const ttk::DiagramType &newData, const std::vector< ttk::MatchingType > &matchingsCritType, const std::vector< size_t > &indexBaryCritType, const std::vector< size_t > &indexDataCritType, std::vector< std::vector< std::array< double, 2 > > > &pairToAddGradList, std::vector< std::array< double, 2 > > &directions, std::vector< std::array< double, 2 > > &data_assigned, std::vector< int > &tracker2, const bool doOptimizeAtoms) const | ttk::PersistenceDiagramDictionary | protected |
| computeDistance(const BidderDiagram &D1, const BidderDiagram &D2, std::vector< ttk::MatchingType > &matching) const | ttk::PersistenceDiagramDictionary | protected |
| computeGradientAtoms(std::vector< Matrix > &gradsAtoms, const std::vector< double > &weights, const ttk::DiagramType &Barycenter, const ttk::DiagramType &newData, const std::vector< ttk::MatchingType > &matchingsMin, const std::vector< ttk::MatchingType > &matchingsMax, const std::vector< ttk::MatchingType > &matchingsSad, const std::vector< size_t > &indexBaryMin, const std::vector< size_t > &indexBaryMax, const std::vector< size_t > &indexBarySad, const std::vector< size_t > &indexDataMin, const std::vector< size_t > &indexDataMax, const std::vector< size_t > &indexDataSad, std::vector< int > &checker, std::vector< std::vector< std::array< double, 2 > > > &pairToAddGradList, ttk::DiagramType &infoToAdd, bool doDimReduct) const | ttk::PersistenceDiagramDictionary | protected |
| computeGradientWeights(std::vector< double > &gradWeights, std::vector< Matrix > &hessianList, const std::vector< ttk::DiagramType > &dictDiagrams, const std::vector< std::vector< ttk::MatchingType > > &matchingsAtoms, const ttk::DiagramType &Barycenter, const ttk::DiagramType &newData, const std::vector< ttk::MatchingType > &matchingsMin, const std::vector< ttk::MatchingType > &matchingsMax, const std::vector< ttk::MatchingType > &matchingsSad, const std::vector< size_t > &indexBaryMin, const std::vector< size_t > &indexBaryMax, const std::vector< size_t > &indexBarySad, const std::vector< size_t > &indexDataMin, const std::vector< size_t > &indexDataMax, const std::vector< size_t > &indexDataSad, const bool doOptimizeAtoms) const | ttk::PersistenceDiagramDictionary | protected |
| ComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation) | ttkAlgorithm | |
| controlAtomsSize(const std::vector< ttk::DiagramType > &intermediateDiagrams, std::vector< ttk::DiagramType > &dictDiagrams) const | ttk::PersistenceDiagramDictionary | protected |
| CreationFeatures_ | ttk::PersistenceDiagramDictionary | protected |
| Debug() | ttk::Debug | |
| debugLevel_ | ttk::Debug | mutableprotected |
| debugMsgNamePrefix_ | ttk::Debug | protected |
| debugMsgPrefix_ | ttk::Debug | protected |
| DimReductMode_ | ttk::PersistenceDiagramDictionary | protected |
| distVect(const std::vector< double > &vec1, const std::vector< double > &vec2) const | ttk::PersistenceDiagramDictionary | protected |
| do_max_ | ttk::PersistenceDiagramDictionary | protected |
| do_min_ | ttk::PersistenceDiagramDictionary | protected |
| do_sad_ | ttk::PersistenceDiagramDictionary | protected |
| execute(std::vector< ttk::DiagramType > &intermediateDiagrams, const std::vector< ttk::DiagramType > &intermediateAtoms, std::vector< ttk::DiagramType > &dictDiagrams, std::vector< std::vector< double > > &vectorWeights, const int seed, const int numAtom, std::vector< double > &lossTab, std::vector< std::vector< double > > &allLosses, double percent) | ttk::PersistenceDiagramDictionary | protected |
| FillInputPortInformation(int port, vtkInformation *info) override | ttkPersistenceDiagramDictionary | protected |
| ttkAlgorithm::FillInputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
| FillOutputPortInformation(int port, vtkInformation *info) override | ttkPersistenceDiagramDictionary | protected |
| ttkAlgorithm::FillOutputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
| GenerateGlobalIds(vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId) | ttkAlgorithm | protected |
| GetAtomNumber_() | ttkPersistenceDiagramDictionary | virtual |
| GetBackEnd() const | ttkPersistenceDiagramDictionary | virtual |
| GetClassName() | ttkPersistenceDiagramDictionary | virtual |
| GetCompressionFactor_() | ttkPersistenceDiagramDictionary | virtual |
| GetCompressionMode_() | ttkPersistenceDiagramDictionary | virtual |
| GetCreationFeatures_() | ttkPersistenceDiagramDictionary | virtual |
| GetDimReductMode_() | ttkPersistenceDiagramDictionary | virtual |
| GetIdentifierArrayPtr(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true) | ttkAlgorithm | |
| GetMaxEigenValue_() | ttkPersistenceDiagramDictionary | virtual |
| GetMaxEpoch_() | ttkPersistenceDiagramDictionary | virtual |
| getMaxPers(const ttk::DiagramType &data) | ttk::PersistenceDiagramDictionary | protected |
| getMostPersistent(const std::vector< BidderDiagram > &bidder_diags) const | ttk::PersistenceDiagramDictionary | protected |
| GetOptimizeAtoms_() | ttkPersistenceDiagramDictionary | virtual |
| GetOptimizeWeights_() | ttkPersistenceDiagramDictionary | virtual |
| GetOptionalArray(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0) | ttkAlgorithm | |
| GetOrderArray(vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false) | ttkAlgorithm | |
| GetOrderArrayName(vtkDataArray *const array) | ttkAlgorithm | static |
| GetOutput() | ttkAlgorithm | |
| GetOutput(int) | ttkAlgorithm | |
| GetPairType() | ttkPersistenceDiagramDictionary | inline |
| GetPercent_() | ttkPersistenceDiagramDictionary | virtual |
| GetProgApproach_() | ttkPersistenceDiagramDictionary | virtual |
| GetProgBarycenter_() | ttkPersistenceDiagramDictionary | virtual |
| GetSeed_() | ttkPersistenceDiagramDictionary | virtual |
| GetStopCondition_() | ttkPersistenceDiagramDictionary | virtual |
| getThreadNumber() const | ttk::BaseClass | inline |
| gettingBidderDiagrams(const std::vector< ttk::DiagramType > &intermediateDiagrams, std::vector< ttk::DiagramType > &inputDiagramsMin, std::vector< ttk::DiagramType > &inputDiagramsSad, std::vector< ttk::DiagramType > &inputDiagramsMax, std::vector< BidderDiagram > &bidderDiagramsMin, std::vector< BidderDiagram > &bidderDiagramsSad, std::vector< BidderDiagram > &bidderDiagramsMax, std::vector< std::vector< size_t > > &originIndexMin, std::vector< std::vector< size_t > > &originIndexSad, std::vector< std::vector< size_t > > &originIndexMax, bool insertOriginIndexMode) const | ttk::PersistenceDiagramDictionary | protected |
| GetTriangulation(vtkDataSet *dataSet) | ttkAlgorithm | |
| GetWassersteinMetric() | ttkPersistenceDiagramDictionary | inline |
| initDictionary(std::vector< ttk::DiagramType > &dictDiagrams, const std::vector< ttk::DiagramType > &datas, const std::vector< ttk::DiagramType > &inputAtoms, const int &nbAtom, bool &do_min_, bool &do_sad_, bool &do_max_, int seed, double &percent) | ttk::PersistenceDiagramDictionary | protected |
| IsA(const char *type) | ttkPersistenceDiagramDictionary | virtual |
| IsTypeOf(const char *type) | ttkPersistenceDiagramDictionary | static |
| lastLineMode | ttk::Debug | protectedstatic |
| lastObject_ | ttk::BaseClass | protected |
| MaxEigenValue_ | ttk::PersistenceDiagramDictionary | protected |
| MaxEpoch_ | ttk::PersistenceDiagramDictionary | protected |
| MaxLag2_ | ttk::PersistenceDiagramDictionary | protected |
| method(const std::vector< ttk::DiagramType > &intermediateDiagrams, std::vector< ttk::DiagramType > &dictDiagrams, std::vector< std::vector< double > > &vectorWeights, const int numAtom, std::vector< double > &lossTab, std::vector< std::vector< double > > &allLosses, std::vector< std::vector< double > > &histoVectorWeights, std::vector< ttk::DiagramType > &histoDictDiagrams, bool preWeightOpt, double percent, bool doCompression) | ttk::PersistenceDiagramDictionary | protected |
| MPIGhostPipelinePreconditioning(vtkDataSet *input) | ttkAlgorithm | protected |
| MPIPipelinePreconditioning(vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr) | ttkAlgorithm | protected |
| MPITriangulationPreconditioning(ttk::Triangulation *triangulation, vtkDataSet *input) | ttkAlgorithm | protected |
| New() | ttkPersistenceDiagramDictionary | static |
| OptimizeAtoms_ | ttk::PersistenceDiagramDictionary | protected |
| OptimizeWeights_ | ttk::PersistenceDiagramDictionary | protected |
| PersistenceDiagramDictionary() | ttk::PersistenceDiagramDictionary | inlineprotected |
| printErr(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| ttkAlgorithm::printMsg(const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsgInternal(const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| ttkAlgorithm::printMsgInternal(const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| printWrn(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| ProcessRequest(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override | ttkAlgorithm | |
| ProgApproach_ | ttk::PersistenceDiagramDictionary | protected |
| ProgBarycenter_ | ttk::PersistenceDiagramDictionary | protected |
| RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override | ttkPersistenceDiagramDictionary | protected |
| ttkAlgorithm::RequestData(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestDataNotGenerated(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestDataObject(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) | ttkAlgorithm | protectedvirtual |
| RequestInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateExtent(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateTime(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateTimeDependentInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| SafeDownCast(vtkObject *o) | ttkPersistenceDiagramDictionary | static |
| SAME_DATA_TYPE_AS_INPUT_PORT() | ttkAlgorithm | static |
| SetAtomNumber_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetBackEnd(int _arg) | ttkPersistenceDiagramDictionary | virtual |
| SetBackEnd(BACKEND) | ttkPersistenceDiagramDictionary | virtual |
| setBidderDiagrams(const size_t nInputs, std::vector< ttk::DiagramType > &inputDiagrams, std::vector< BidderDiagram > &bidder_diags) const | ttk::PersistenceDiagramDictionary | protected |
| SetCompactTriangulationCacheSize(float cacheSize) | ttkAlgorithm | inline |
| SetCompressionFactor_(double) | ttkPersistenceDiagramDictionary | virtual |
| SetCompressionMode_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetCreationFeatures_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetDebugLevel(int debugLevel) | ttkAlgorithm | inline |
| setDebugLevel(const int &debugLevel) | ttk::Debug | virtual |
| setDebugMsgPrefix(const std::string &prefix) | ttk::Debug | inline |
| SetDimReductMode_(int) | ttkPersistenceDiagramDictionary | virtual |
| setDos(const bool min, const bool sad, const bool max) | ttk::PersistenceDiagramDictionary | inlineprotected |
| SetInputData(vtkDataSet *) | ttkAlgorithm | |
| SetInputData(int, vtkDataSet *) | ttkAlgorithm | |
| SetMaxEigenValue_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetMaxEpoch_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetOptimizeAtoms_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetOptimizeWeights_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetPairType(const int data) | ttkPersistenceDiagramDictionary | inline |
| SetPercent_(double) | ttkPersistenceDiagramDictionary | virtual |
| SetProgApproach_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetProgBarycenter_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetSeed_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetStopCondition_(int) | ttkPersistenceDiagramDictionary | virtual |
| SetThreadNumber(int threadNumber) | ttkAlgorithm | inline |
| setThreadNumber(const int threadNumber) | ttk::BaseClass | inlinevirtual |
| SetUseAllCores(bool useAllCores) | ttkAlgorithm | inline |
| setUseDimReduct(bool data) | ttk::PersistenceDiagramDictionary | inlineprotected |
| setUseProgApproach(bool data) | ttk::PersistenceDiagramDictionary | inlineprotected |
| SetWassersteinMetric(const std::string &data) | ttkPersistenceDiagramDictionary | inline |
| setWrapper(const Wrapper *wrapper) override | ttk::Debug | virtual |
| StopCondition_ | ttk::PersistenceDiagramDictionary | protected |
| Superclass typedef | ttkPersistenceDiagramDictionary | |
| threadNumber_ | ttk::BaseClass | mutableprotected |
| ttkAlgorithm() | ttkAlgorithm | protected |
| ttkPersistenceDiagramDictionary() | ttkPersistenceDiagramDictionary | protected |
| UpdateThreadNumber() | ttkAlgorithm | inline |
| Wasserstein | ttk::PersistenceDiagramDictionary | protected |
| welcomeMsg(std::ostream &stream) | ttk::Debug | protected |
| wrapper_ | ttk::BaseClass | protected |
| ~BaseClass()=default | ttk::BaseClass | virtual |
| ~Debug() override | ttk::Debug | |
| ~ttkAlgorithm() override | ttkAlgorithm | protected |
| ~ttkPersistenceDiagramDictionary() override=default | ttkPersistenceDiagramDictionary | protected |
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