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TTK
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This is the complete list of members for ttk::MergeTreeClustering< dataType2 >, including all inherited members.
| addNodes(ftm::MergeTree< dataType > &mTree1, int noTrees, std::vector< std::tuple< ftm::idNode, ftm::idNode, int > > &nodesToProcess, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode > > > &nodesProcessed) | ttk::MergeTreeBarycenter | inline |
| addNodes_ | ttk::MergeTreeBarycenter | protected |
| addScaledDeletedNodesCost(std::vector< ftm::FTMTree_MT * > &oriTrees, std::vector< std::vector< ftm::idNode > > &deletedNodes, std::vector< dataType > &distances) | ttk::MergeTreeBarycenter | inline |
| allDistanceTime_ | ttk::MergeTreeBarycenter | protected |
| alpha_ | ttk::MergeTreeBarycenter | protected |
| assignment(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< dataType > &distances, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| assignmentCentroids(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< std::tuple< int, int > > &assignmentC, std::vector< dataType > &bestDistanceT, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| assignmentCentroidsAccelerated(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< std::tuple< int, int > > &assignmentC, std::vector< dataType > &bestDistanceT, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| assignmentCentroidsNaive(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< std::tuple< int, int > > &assignmentC, std::vector< dataType > &bestDistanceT, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| assignmentPara(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< dataType > &distances, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| assignmentSolverID_ | ttk::MergeTreeBase | protected |
| assignmentTask(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< dataType > &distances, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| barycenterMaximumNumberOfPairs_ | ttk::MergeTreeBarycenter | protected |
| barycenterMergeTree_ | ttk::MergeTreeBase | protected |
| barycenterSizeLimitPercent_ | ttk::MergeTreeBarycenter | protected |
| BaseClass() | ttk::BaseClass | |
| branchDecomposition_ | ttk::MergeTreeBase | protected |
| branchDecompositionToTree(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| cleanTree_ | ttk::MergeTreeBase | protected |
| computeBarycenter(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< double > &alphas, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &finalMatchings, bool finalAsgnDoubleInput=false, bool finalAsgnFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| computeBranchDecomposition(ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged) | ttk::MergeTreeBase | inline |
| computeCentroids(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, matchingVectorType &outputMatching, std::vector< double > &alphas, std::vector< int > &clusteringAssignment, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< ftm::MergeTree< dataType > > ¢roids2, matchingVectorType &outputMatching2) | ttk::MergeTreeClustering< dataType2 > | inline |
| computeDistance(dataType x1, dataType x2, dataType y1, dataType y2, double power=2) | ttk::MergeTreeBase | inline |
| computeOneBarycenter(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< double > &alphas, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &finalMatchings) | ttk::MergeTreeClustering< dataType2 > | inline |
| computeOneDistance(ftm::FTMTree_MT *tree, ftm::FTMTree_MT *baryTree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, dataType &distance, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| computeOneDistance(ftm::FTMTree_MT *tree, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, dataType &distance, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| computeOneDistance(ftm::MergeTree< dataType > &baryMergeTree, ftm::MergeTree< dataType > &baryMergeTree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, dataType &distance, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching) | ttk::MergeTreeBase | inline |
| convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching) | ttk::MergeTreeBase | inline |
| convertToDiagram_ | ttk::MergeTreeBase | protected |
| copyCentroids(std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< ftm::MergeTree< dataType > > &oldCentroids) | ttk::MergeTreeClustering< dataType2 > | inline |
| copyMinMaxPair(ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false) | ttk::MergeTreeBase | inline |
| Debug() | ttk::Debug | |
| debugLevel_ | ttk::Debug | mutableprotected |
| debugMsgNamePrefix_ | ttk::Debug | protected |
| debugMsgPrefix_ | ttk::Debug | protected |
| deleteCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId) | ttk::MergeTreeBase | inline |
| deleteMultiPersPairs(ftm::FTMTree_MT *tree, bool useBD) | ttk::MergeTreeBase | inline |
| deleteMultiPersPairs_ | ttk::MergeTreeBase | protected |
| deterministic_ | ttk::MergeTreeBarycenter | protected |
| distanceSquaredRoot_ | ttk::MergeTreeBase | protected |
| dontUseMinMaxPair(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| epsilon1UseFarthestSaddle_ | ttk::MergeTreeBase | protected |
| epsilon2Tree1_ | ttk::MergeTreeBase | protected |
| epsilon2Tree2_ | ttk::MergeTreeBase | protected |
| epsilon3Tree1_ | ttk::MergeTreeBase | protected |
| epsilon3Tree2_ | ttk::MergeTreeBase | protected |
| epsilonTree1_ | ttk::MergeTreeBase | protected |
| epsilonTree2_ | ttk::MergeTreeBase | protected |
| execute(std::vector< ftm::MergeTree< dataType > > &trees, matchingVectorType &outputMatching, std::vector< double > &alphas, std::vector< int > &clusteringAssignment, std::vector< ftm::MergeTree< dataType > > &trees2, matchingVectorType &outputMatching2, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| execute(std::vector< ftm::MergeTree< dataType > > &trees, matchingVectorType &outputMatching, std::vector< int > &clusteringAssignment, std::vector< ftm::MergeTree< dataType > > &trees2, matchingVectorType &outputMatching2, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| execute(std::vector< ftm::MergeTree< dataType > > &trees, matchingVectorType &outputMatching, std::vector< int > &clusteringAssignment, std::vector< ftm::MergeTree< dataType > > ¢roids) | ttk::MergeTreeClustering< dataType2 > | inline |
| ttk::MergeTreeBarycenter::execute(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< double > &alphas, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &finalMatchings, ftm::MergeTree< dataType > &baryMergeTree, bool finalAsgnDoubleInput=false, bool finalAsgnFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| ttk::MergeTreeBarycenter::execute(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &finalMatchings, ftm::MergeTree< dataType > &baryMergeTree, bool finalAsgnDoubleInput=false, bool finalAsgnFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| finalAssignmentCentroids(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, matchingVectorType &matchingsC, std::vector< std::tuple< int, int > > &assignmentC, std::vector< dataType > &bestDistanceT, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< ftm::MergeTree< dataType > > ¢roids2, matchingVectorType &matchingsC2) | ttk::MergeTreeClustering< dataType2 > | inline |
| finalDistances_ | ttk::MergeTreeBarycenter | protected |
| fixMergedRootOrigin(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| fixMergedRootOriginBarycenter(ftm::MergeTree< dataType > &barycenter) | ttk::MergeTreeBarycenter | inline |
| fixMergedRootOriginClustering(std::vector< ftm::MergeTree< dataType > > ¢roids) | ttk::MergeTreeClustering< dataType2 > | inline |
| getAddDeletedNodesTime() | ttk::MergeTreeBarycenter | inline |
| getAllDistanceTime() | ttk::MergeTreeBarycenter | inline |
| getBestInitTreeIndex(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::FTMTree_MT * > &trees2, unsigned int barycenterMaximumNumberOfPairs, double sizeLimitPercent, bool distMinimizer=true) | ttk::MergeTreeBarycenter | inline |
| getBestInitTreeIndex(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::FTMTree_MT * > &trees2, double sizeLimitPercent, bool distMinimizer=true) | ttk::MergeTreeBarycenter | inline |
| getBestInitTreeIndex(std::vector< ftm::FTMTree_MT * > &trees, bool distMinimizer=true) | ttk::MergeTreeBarycenter | inline |
| getCentroidsDistanceMatrix(std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< std::vector< double > > &distanceMatrix, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeClustering< dataType2 > | inline |
| getDistanceMatrix(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< std::vector< double > > &distanceMatrix, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| getDistanceMatrix(std::vector< ftm::FTMTree_MT * > &trees, std::vector< std::vector< double > > &distanceMatrix, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| getFinalDistances() | ttk::MergeTreeBarycenter | inline |
| getNodesAndScalarsToAdd(ftm::MergeTree< dataType > &ttkNotUsed(mTree1), ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2, std::vector< dataType > &newScalarsVector, std::vector< std::tuple< ftm::idNode, ftm::idNode, int > > &nodesToProcess, ftm::idNode nodeCpt, int i) | ttk::MergeTreeBarycenter | inline |
| getParametrizedBirthDeath(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1) | ttk::MergeTreeBarycenter | inline |
| getParametrizedDistanceMatrix(std::vector< ftm::FTMTree_MT * > &trees, std::vector< std::vector< double > > &distanceMatrix, unsigned int barycenterMaximumNumberOfPairs, double sizeLimitPercent, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| getParamNames(std::vector< std::string > ¶mNames) | ttk::MergeTreeBase | inline |
| getParamValueFromName(std::string ¶mName) | ttk::MergeTreeBase | inline |
| getSizeLimitedDistanceMatrix(std::vector< ftm::FTMTree_MT * > &trees, std::vector< std::vector< double > > &distanceMatrix, unsigned int barycenterMaximumNumberOfPairs, double sizeLimitPercent, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeBarycenter | inline |
| getSizeLimitedTrees(std::vector< ftm::FTMTree_MT * > &trees, unsigned int barycenterMaximumNumberOfPairs, double sizeLimitPercent, std::vector< ftm::MergeTree< dataType > > &mTreesLimited) | ttk::MergeTreeBarycenter | inline |
| getSizeLimitMetric(std::vector< ftm::FTMTree_MT * > &trees) | ttk::MergeTreeBase | inline |
| getThreadNumber() const | ttk::BaseClass | inline |
| getTrees2NodeCorr() | ttk::MergeTreeClustering< dataType2 > | inline |
| getTreesNodeCorr() | ttk::MergeTreeBase | inline |
| getTreesStats(std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats) | ttk::MergeTreeBase | inline |
| identifyRealMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching) | ttk::MergeTreeBase | inline |
| initAcceleratedKMeans(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| initAcceleratedKMeansVectors(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< ftm::FTMTree_MT * > &ttkNotUsed(trees2)) | ttk::MergeTreeClustering< dataType2 > | inline |
| initBarycenterTree(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryTree, bool distMinimizer=true) | ttk::MergeTreeBarycenter | inline |
| initCentroids(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::FTMTree_MT * > &trees2, std::vector< std::vector< ftm::MergeTree< dataType > > > &allCentroids) | ttk::MergeTreeClustering< dataType2 > | inline |
| initNewCentroid(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > ¢roid, int noNewCentroid) | ttk::MergeTreeClustering< dataType2 > | inline |
| insertCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId) | ttk::MergeTreeBase | inline |
| interpolation(ftm::MergeTree< dataType > &baryMergeTree, ftm::idNode nodeId, std::vector< dataType > &newScalarsVector, std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::idNode > &nodes, std::vector< double > &alphas) | ttk::MergeTreeBarycenter | inline |
| interpolationAdded(ftm::FTMTree_MT *tree, ftm::idNode nodeId, double alpha, ftm::MergeTree< dataType > &baryMergeTree, ftm::idNode nodeB, std::vector< dataType > &newScalarsVector) | ttk::MergeTreeBarycenter | inline |
| isCalled_ | ttk::MergeTreeBarycenter | protected |
| isPersistenceDiagram_ | ttk::MergeTreeBase | protected |
| keepMostImportantPairs(ftm::FTMTree_MT *tree, int n, bool useBD) | ttk::MergeTreeBase | inline |
| keepSubtree_ | ttk::MergeTreeBase | protected |
| lastLineMode | ttk::Debug | protectedstatic |
| lastObject_ | ttk::BaseClass | protected |
| limitSizeBarycenter(ftm::MergeTree< dataType > &bary, std::vector< ftm::FTMTree_MT * > &trees, unsigned int barycenterMaximumNumberOfPairs, double percent, bool useBD=true) | ttk::MergeTreeBarycenter | inline |
| limitSizeBarycenter(ftm::MergeTree< dataType > &bary, std::vector< ftm::FTMTree_MT * > &trees, double percent, bool useBD=true) | ttk::MergeTreeBarycenter | inline |
| limitSizeBarycenter(ftm::MergeTree< dataType > &bary, std::vector< ftm::FTMTree_MT * > &trees, bool useBD=true) | ttk::MergeTreeBarycenter | inline |
| limitSizePercent(ftm::MergeTree< dataType > &bary, std::vector< ftm::FTMTree_MT * > &trees, double percent, bool useBD) | ttk::MergeTreeBarycenter | inline |
| matchingCorrespondence(treesMatchingVector &matchingT, std::vector< int > &nodeCorr, std::vector< int > &assignedTreesIndex) | ttk::MergeTreeClustering< dataType2 > | inline |
| mergeSaddle(ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false) | ttk::MergeTreeBase | inline |
| MergeTreeBarycenter() | ttk::MergeTreeBarycenter | inline |
| MergeTreeBase() | ttk::MergeTreeBase | inline |
| MergeTreeClustering() | ttk::MergeTreeClustering< dataType2 > | inline |
| mixDistances(dataType distance1, dataType distance2) | ttk::MergeTreeBase | inline |
| mixDistancesMatrix(std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2) | ttk::MergeTreeBase | inline |
| mixDistancesMinMaxPairWeight(bool isFirstInput) | ttk::MergeTreeBase | inline |
| mixDistancesWeight(bool isFirstInput) | ttk::MergeTreeBase | inline |
| mixtureCoefficient_ | ttk::MergeTreeBase | protected |
| mtFlattening(ftm::MergeTree< dataType > &mt) | ttk::MergeTreeBase | inline |
| mtsFlattening(std::vector< ftm::MergeTree< dataType > > &mts) | ttk::MergeTreeBase | inline |
| nodePerTask_ | ttk::MergeTreeBase | protected |
| nonMatchingWeight_ | ttk::MergeTreeBase | protected |
| normalizedWasserstein_ | ttk::MergeTreeBase | protected |
| parallelize_ | ttk::MergeTreeBase | protected |
| persistenceMerging(ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100) | ttk::MergeTreeBase | inline |
| persistenceScaling(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > &mergeTrees, std::vector< ftm::FTMTree_MT * > &oriTrees, int iterationNumber, std::vector< std::vector< ftm::idNode > > &deletedNodes) | ttk::MergeTreeBarycenter | inline |
| persistenceThreshold_ | ttk::MergeTreeBase | protected |
| persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes) | ttk::MergeTreeBase | inline |
| persistenceThresholding(ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes) | ttk::MergeTreeBase | inline |
| persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT) | ttk::MergeTreeBase | inline |
| persistenceThresholding(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| postprocess_ | ttk::MergeTreeBarycenter | protected |
| postprocessingClustering(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, matchingVectorType &outputMatching, std::vector< int > &clusteringAssignment) | ttk::MergeTreeClustering< dataType2 > | inline |
| postprocessingPipeline(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| preprocess_ | ttk::MergeTreeBarycenter | protected |
| preprocessingClustering(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< int > > &nodeCorr, bool useMinMaxPairT=true) | ttk::MergeTreeClustering< dataType2 > | inline |
| preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inline |
| preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inline |
| preprocessTree(ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inline |
| printBaryStats(ftm::FTMTree_MT *baryTree, const debug::Priority &priority=debug::Priority::INFO) | ttk::MergeTreeBarycenter | inline |
| printCentroidsStats(std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| printErr(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| printMatching(std::vector< MatchingType > &matchings) | ttk::MergeTreeBase | inline |
| printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings) | ttk::MergeTreeBase | inline |
| printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings) | ttk::MergeTreeBase | inline |
| printMsg(const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsgInternal(const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| printMsgInternal(const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| printOutputMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true) | ttk::MergeTreeBase | inline |
| printPairs(std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs) | ttk::MergeTreeBase | inline |
| printTable(dataType *table, int nRows, int nCols) | ttk::MergeTreeBase | inline |
| printTableVector(std::vector< std::vector< dataType > > &table) | ttk::MergeTreeBase | inline |
| printTreesStats(std::vector< ftm::FTMTree_MT * > &trees) | ttk::MergeTreeBase | inline |
| printTreesStats(std::vector< ftm::MergeTree< dataType > > &trees) | ttk::MergeTreeBase | inline |
| printWrn(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| progressiveBarycenter_ | ttk::MergeTreeBarycenter | protected |
| progressiveSpeedDivisor_ | ttk::MergeTreeBarycenter | protected |
| putBackMergedNodes(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| putBackMinMaxPair(std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< ftm::MergeTree< dataType > > ¢roids2) | ttk::MergeTreeClustering< dataType2 > | inline |
| relabelCost(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2) | ttk::MergeTreeBase | inline |
| relabelCostOnly(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2) | ttk::MergeTreeBase | inline |
| reverseNodeCorr(ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr) | ttk::MergeTreeBase | inline |
| samePreviousAssignment(int clusterId) | ttk::MergeTreeClustering< dataType2 > | inline |
| setAddNodes(bool addNodesT) | ttk::MergeTreeBarycenter | inline |
| setAlpha(double alpha) | ttk::MergeTreeBarycenter | inline |
| setAssignmentSolver(int assignmentSolver) | ttk::MergeTreeBase | inline |
| setBarycenterMaximumNumberOfPairs(unsigned int maxi) | ttk::MergeTreeBarycenter | inline |
| setBarycenterMergeTree(bool imt) | ttk::MergeTreeBase | inline |
| setBarycenterSizeLimitPercent(double percent) | ttk::MergeTreeBarycenter | inline |
| setBranchDecomposition(bool useBD) | ttk::MergeTreeBase | inline |
| setCleanTree(bool clean) | ttk::MergeTreeBase | inline |
| setDebugLevel(const int &debugLevel) | ttk::Debug | virtual |
| setDebugMsgPrefix(const std::string &prefix) | ttk::Debug | inline |
| setDeleteMultiPersPairs(bool deleteMultiPersPairsT) | ttk::MergeTreeBase | inline |
| setDeterministic(bool deterministicT) | ttk::MergeTreeBarycenter | inline |
| setDistanceSquaredRoot(bool distanceSquaredRoot) | ttk::MergeTreeBase | inline |
| setEpsilon1UseFarthestSaddle(bool b) | ttk::MergeTreeBase | inline |
| setEpsilon2Tree1(double epsilon) | ttk::MergeTreeBase | inline |
| setEpsilon2Tree2(double epsilon) | ttk::MergeTreeBase | inline |
| setEpsilon3Tree1(double epsilon) | ttk::MergeTreeBase | inline |
| setEpsilon3Tree2(double epsilon) | ttk::MergeTreeBase | inline |
| setEpsilonTree1(double epsilon) | ttk::MergeTreeBase | inline |
| setEpsilonTree2(double epsilon) | ttk::MergeTreeBase | inline |
| setIsCalled(bool ic) | ttk::MergeTreeBarycenter | inline |
| setIsPersistenceDiagram(bool isPD) | ttk::MergeTreeBase | inline |
| setKeepSubtree(bool keepSubtree) | ttk::MergeTreeBase | inline |
| setMixtureCoefficient(double coef) | ttk::MergeTreeClustering< dataType2 > | inline |
| setNoCentroids(unsigned int noCentroidsT) | ttk::MergeTreeClustering< dataType2 > | inline |
| setNodePerTask(int npt) | ttk::MergeTreeBase | inline |
| setNonMatchingWeight(double weight) | ttk::MergeTreeBase | inline |
| setNormalizedWasserstein(bool normalizedWasserstein) | ttk::MergeTreeBase | inline |
| setParallelize(bool para) | ttk::MergeTreeBase | inline |
| setParamValueFromName(std::string ¶mName, double value) | ttk::MergeTreeBase | inline |
| setPersistenceThreshold(double pt) | ttk::MergeTreeBase | inline |
| setPostprocess(bool postproc) | ttk::MergeTreeBarycenter | inline |
| setPreprocess(bool preproc) | ttk::MergeTreeBarycenter | inline |
| setProgressiveBarycenter(bool progressive) | ttk::MergeTreeBarycenter | inline |
| setProgressiveSpeedDivisor(double progSpeed) | ttk::MergeTreeBarycenter | inline |
| setThreadNumber(const int threadNumber) | ttk::BaseClass | inlinevirtual |
| setTol(double tolT) | ttk::MergeTreeBarycenter | inline |
| setUseMinMaxPair(bool useMinMaxPair) | ttk::MergeTreeBase | inline |
| setWrapper(const Wrapper *wrapper) override | ttk::Debug | virtual |
| threadNumber_ | ttk::BaseClass | mutableprotected |
| tol_ | ttk::MergeTreeBarycenter | protected |
| treesNodeCorr_ | ttk::MergeTreeBase | protected |
| updateBarycenterTree(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< double > &alphas, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings) | ttk::MergeTreeBarycenter | inline |
| updateBarycenterTreeScalars(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< double > &alphas, unsigned int indexAddedNodes, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings) | ttk::MergeTreeBarycenter | inline |
| updateBarycenterTreeStructure(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings) | ttk::MergeTreeBarycenter | inline |
| updateCentroids(std::vector< ftm::FTMTree_MT * > &trees, std::vector< ftm::MergeTree< dataType > > ¢roids, std::vector< double > &alphas, std::vector< std::tuple< int, int > > &assignmentC) | ttk::MergeTreeClustering< dataType2 > | inline |
| updateNodesAndScalars(ftm::MergeTree< dataType > &mTree1, int noTrees, std::vector< std::tuple< ftm::idNode, ftm::idNode, int > > &nodesToProcess, std::vector< dataType > &newScalarsVector, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode > > > &nodesProcessed) | ttk::MergeTreeBarycenter | inline |
| useDoubleInput_ | ttk::MergeTreeBase | protected |
| useFullMerge_ | ttk::MergeTreeBase | protected |
| useMinMaxPair_ | ttk::MergeTreeBase | protected |
| verifyBarycenterTwoTrees(std::vector< ftm::FTMTree_MT * > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &finalMatchings, std::vector< dataType > distances) | ttk::MergeTreeBarycenter | inline |
| verifyOrigins(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| verifyPairsTree(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inline |
| wassersteinPower_ | ttk::MergeTreeBase | protected |
| welcomeMsg(std::ostream &stream) | ttk::Debug | protected |
| wrapper_ | ttk::BaseClass | protected |
| ~BaseClass()=default | ttk::BaseClass | virtual |
| ~Debug() override | ttk::Debug | |
| ~MergeTreeBarycenter() override=default | ttk::MergeTreeBarycenter | |
| ~MergeTreeClustering() override=default | ttk::MergeTreeClustering< dataType2 > |
1.9.8