#include <MergeTreeBase.h>

Inheritance diagram for ttk::MergeTreeBase:

Public Member Functions
	MergeTreeBase ()

void	setAssignmentSolver (int assignmentSolver)

void	setEpsilon1UseFarthestSaddle (bool b)

void	setEpsilonTree1 (double epsilon)

void	setEpsilonTree2 (double epsilon)

void	setEpsilon2Tree1 (double epsilon)

void	setEpsilon2Tree2 (double epsilon)

void	setEpsilon3Tree1 (double epsilon)

void	setEpsilon3Tree2 (double epsilon)

void	setPersistenceThreshold (double pt)

void	setParallelize (bool para)

void	setNodePerTask (int npt)

void	setBranchDecomposition (bool useBD)

void	setNormalizedWasserstein (bool normalizedWasserstein)

void	setKeepSubtree (bool keepSubtree)

void	setNonMatchingWeight (double weight)

void	setBarycenterMergeTree (bool imt)

void	setDistanceSquaredRoot (bool distanceSquaredRoot)

void	setUseMinMaxPair (bool useMinMaxPair)

void	setDeleteMultiPersPairs (bool deleteMultiPersPairsT)

void	setCleanTree (bool clean)

void	setIsPersistenceDiagram (bool isPD)

std::vector< std::vector< int > >	getTreesNodeCorr ()

double	mixDistancesMinMaxPairWeight (bool isFirstInput)

double	mixDistancesWeight (bool isFirstInput)

template<class dataType >
double	mixDistances (dataType distance1, dataType distance2)

template<class dataType >
void	mixDistancesMatrix (std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)

template<class dataType >
void	mergeSaddle (ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)

template<class dataType >
void	persistenceMerging (ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)

template<class dataType >
void	keepMostImportantPairs (ftm::FTMTree_MT *tree, int n, bool useBD)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree)

template<class dataType >
void	verifyOrigins (ftm::FTMTree_MT *tree)

template<class dataType >
void	preprocessTree (ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)

template<class dataType >
ftm::FTMTree_MT *	computeBranchDecomposition (ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)

template<class dataType >
void	dontUseMinMaxPair (ftm::FTMTree_MT *tree)

void	verifyPairsTree (ftm::FTMTree_MT *tree)

template<class dataType >
void	deleteMultiPersPairs (ftm::FTMTree_MT *tree, bool useBD)

template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)

template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)

void	reverseNodeCorr (ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)

template<class dataType >
void	mtFlattening (ftm::MergeTree< dataType > &mt)

template<class dataType >
void	mtsFlattening (std::vector< ftm::MergeTree< dataType > > &mts)

double	getSizeLimitMetric (std::vector< ftm::FTMTree_MT * > &trees)

template<class dataType >
void	copyMinMaxPair (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)

template<class dataType >
std::tuple< int, dataType >	fixMergedRootOrigin (ftm::FTMTree_MT *tree)

template<class dataType >
void	branchDecompositionToTree (ftm::FTMTree_MT *tree)

template<class dataType >
void	putBackMergedNodes (ftm::FTMTree_MT *tree)

template<class dataType >
void	postprocessingPipeline (ftm::FTMTree_MT *tree)

template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)

template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)

template<class dataType >
void	identifyRealMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)

template<class dataType >
dataType	computeDistance (dataType x1, dataType x2, dataType y1, dataType y2, double power=2)

template<class dataType >
dataType	deleteCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)

template<class dataType >
dataType	insertCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)

template<class dataType >
dataType	relabelCostOnly (ftm::FTMTree_MT tree1, ftm::idNode nodeId1, ftm::FTMTree_MT tree2, ftm::idNode nodeId2)

template<class dataType >
dataType	relabelCost (ftm::FTMTree_MT tree1, ftm::idNode nodeId1, ftm::FTMTree_MT tree2, ftm::idNode nodeId2)

void	getParamNames (std::vector< std::string > &paramNames)

double	getParamValueFromName (std::string &paramName)

void	setParamValueFromName (std::string &paramName, double value)

void	getTreesStats (std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)

void	printTreesStats (std::vector< ftm::FTMTree_MT * > &trees)

template<class dataType >
void	printTreesStats (std::vector< ftm::MergeTree< dataType > > &trees)

template<class dataType >
void	printTableVector (std::vector< std::vector< dataType > > &table)

template<class dataType >
void	printTable (dataType *table, int nRows, int nCols)

void	printMatching (std::vector< MatchingType > &matchings)

void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)

void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)

template<class dataType >
void	printPairs (std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)

template<class dataType >
void	printOutputMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, bool computeCosts=true)

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Protected Attributes
int	assignmentSolverID_ = 0

bool	epsilon1UseFarthestSaddle_ = false

double	epsilonTree1_ = 0

double	epsilonTree2_ = 0

double	epsilon2Tree1_ = 100

double	epsilon2Tree2_ = 100

double	epsilon3Tree1_ = 100

double	epsilon3Tree2_ = 100

double	persistenceThreshold_ = 0

bool	barycenterMergeTree_ = false

bool	useMinMaxPair_ = true

bool	deleteMultiPersPairs_ = false

bool	branchDecomposition_ = true

int	wassersteinPower_ = 2

bool	normalizedWasserstein_ = true

bool	keepSubtree_ = false

double	nonMatchingWeight_ = 1.0

bool	distanceSquaredRoot_ = true

bool	useFullMerge_ = false

bool	isPersistenceDiagram_ = false

bool	convertToDiagram_ = false

double	mixtureCoefficient_ = 0.5

bool	useDoubleInput_ = false

bool	parallelize_ = true

int	nodePerTask_ = 32

bool	cleanTree_ = true

std::vector< std::vector< int > >	treesNodeCorr_

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Additional Inherited Members
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

Definition at line 24 of file MergeTreeBase.h.

Constructor & Destructor Documentation

◆ MergeTreeBase()

ttk::MergeTreeBase::MergeTreeBase ( )

inline

Definition at line 64 of file MergeTreeBase.h.

Member Function Documentation

◆ branchDecompositionToTree()

template<class dataType >

void ttk::MergeTreeBase::branchDecompositionToTree ( ftm::FTMTree_MT * tree )

inline

Definition at line 808 of file MergeTreeBase.h.

◆ computeBranchDecomposition()

template<class dataType >

ftm::FTMTree_MT * ttk::MergeTreeBase::computeBranchDecomposition	(	ftm::FTMTree_MT *	tree,
		std::vector< std::vector< ftm::idNode > > &	treeNodeMerged
	)

inline

Definition at line 479 of file MergeTreeBase.h.

◆ computeDistance()

template<class dataType >

dataType ttk::MergeTreeBase::computeDistance	(	dataType	x1,
		dataType	x2,
		dataType	y1,
		dataType	y2,
		double	power = `2`
	)

inline

Definition at line 1108 of file MergeTreeBase.h.

◆ convertBranchDecompositionMatching() [1/2]

template<class dataType >

void ttk::MergeTreeBase::convertBranchDecompositionMatching	(	ftm::FTMTree_MT *	tree1,
		ftm::FTMTree_MT *	tree2,
		std::vector< std::tuple< ftm::idNode, ftm::idNode > > &	outputMatching
	)

inline

Definition at line 1067 of file MergeTreeBase.h.

◆ convertBranchDecompositionMatching() [2/2]

template<class dataType >

void ttk::MergeTreeBase::convertBranchDecompositionMatching	(	ftm::FTMTree_MT *	tree1,
		ftm::FTMTree_MT *	tree2,
		std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &	outputMatching
	)

inline

Definition at line 1025 of file MergeTreeBase.h.

◆ copyMinMaxPair()

template<class dataType >

void ttk::MergeTreeBase::copyMinMaxPair	(	ftm::MergeTree< dataType > &	mTree1,
		ftm::MergeTree< dataType > &	mTree2,
		bool	setOrigins = `false`
	)

inline

Definition at line 747 of file MergeTreeBase.h.

◆ deleteCost()

template<class dataType >

dataType ttk::MergeTreeBase::deleteCost	(	ftm::FTMTree_MT *	tree,
		ftm::idNode	nodeId
	)

inline

Definition at line 1119 of file MergeTreeBase.h.

◆ deleteMultiPersPairs()

template<class dataType >

void ttk::MergeTreeBase::deleteMultiPersPairs	(	ftm::FTMTree_MT *	tree,
		bool	useBD
	)

inline

Definition at line 623 of file MergeTreeBase.h.

◆ dontUseMinMaxPair()

template<class dataType >

void ttk::MergeTreeBase::dontUseMinMaxPair ( ftm::FTMTree_MT * tree )

inline

Definition at line 579 of file MergeTreeBase.h.

◆ fixMergedRootOrigin()

template<class dataType >

std::tuple< int, dataType > ttk::MergeTreeBase::fixMergedRootOrigin ( ftm::FTMTree_MT * tree )

inline

Definition at line 789 of file MergeTreeBase.h.

◆ getParamNames()

void ttk::MergeTreeBase::getParamNames ( std::vector< std::string > & paramNames )

inline

Definition at line 1204 of file MergeTreeBase.h.

◆ getParamValueFromName()

double ttk::MergeTreeBase::getParamValueFromName ( std::string & paramName )

inline

Definition at line 1218 of file MergeTreeBase.h.

◆ getSizeLimitMetric()

double ttk::MergeTreeBase::getSizeLimitMetric ( std::vector< ftm::FTMTree_MT * > & trees )

inline

Definition at line 735 of file MergeTreeBase.h.

◆ getTreesNodeCorr()

std::vector< std::vector< int > > ttk::MergeTreeBase::getTreesNodeCorr ( )

inline

Definition at line 154 of file MergeTreeBase.h.

◆ getTreesStats()

void ttk::MergeTreeBase::getTreesStats	(	std::vector< ftm::FTMTree_MT * > &	trees,
		std::array< double, 3 > &	stats
	)

inline

Definition at line 1270 of file MergeTreeBase.h.

◆ identifyRealMatching()

template<class dataType >

void ttk::MergeTreeBase::identifyRealMatching	(	ftm::FTMTree_MT *	tree1,
		ftm::FTMTree_MT *	tree2,
		std::vector< std::tuple< ftm::idNode, ftm::idNode > > &	outputMatching,
		std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &	realMatching
	)

inline

Definition at line 1087 of file MergeTreeBase.h.

◆ insertCost()

template<class dataType >

dataType ttk::MergeTreeBase::insertCost	(	ftm::FTMTree_MT *	tree,
		ftm::idNode	nodeId
	)

inline

Definition at line 1142 of file MergeTreeBase.h.

◆ keepMostImportantPairs()

template<class dataType >

void ttk::MergeTreeBase::keepMostImportantPairs	(	ftm::FTMTree_MT *	tree,
		int	n,
		bool	useBD
	)

inline

Definition at line 356 of file MergeTreeBase.h.

◆ mergeSaddle()

template<class dataType >

void ttk::MergeTreeBase::mergeSaddle	(	ftm::FTMTree_MT *	tree,
		double	epsilon,
		std::vector< std::vector< ftm::idNode > > &	treeNodeMerged,
		bool	mergeByPersistence = `false`
	)

inline

Definition at line 195 of file MergeTreeBase.h.

◆ mixDistances()

template<class dataType >

double ttk::MergeTreeBase::mixDistances	(	dataType	distance1,
		dataType	distance2
	)

inline

Definition at line 175 of file MergeTreeBase.h.

◆ mixDistancesMatrix()

template<class dataType >

void ttk::MergeTreeBase::mixDistancesMatrix	(	std::vector< std::vector< dataType > > &	distanceMatrix,
		std::vector< std::vector< dataType > > &	distanceMatrix2
	)

inline

Definition at line 182 of file MergeTreeBase.h.

◆ mixDistancesMinMaxPairWeight()

double ttk::MergeTreeBase::mixDistancesMinMaxPairWeight ( bool isFirstInput )

inline

Definition at line 161 of file MergeTreeBase.h.

◆ mixDistancesWeight()

double ttk::MergeTreeBase::mixDistancesWeight ( bool isFirstInput )

inline

Definition at line 169 of file MergeTreeBase.h.

◆ mtFlattening()

template<class dataType >

void ttk::MergeTreeBase::mtFlattening ( ftm::MergeTree< dataType > & mt )

inline

Definition at line 720 of file MergeTreeBase.h.

◆ mtsFlattening()

template<class dataType >

void ttk::MergeTreeBase::mtsFlattening ( std::vector< ftm::MergeTree< dataType > > & mts )

inline

Definition at line 730 of file MergeTreeBase.h.

◆ persistenceMerging()

template<class dataType >

void ttk::MergeTreeBase::persistenceMerging	(	ftm::FTMTree_MT *	tree,
		double	epsilon2,
		double	epsilon3 = `100`
	)

inline

Definition at line 317 of file MergeTreeBase.h.

◆ persistenceThresholding() [1/4]

template<class dataType >

void ttk::MergeTreeBase::persistenceThresholding ( ftm::FTMTree_MT * tree )

inline

Definition at line 418 of file MergeTreeBase.h.

◆ persistenceThresholding() [2/4]

template<class dataType >

void ttk::MergeTreeBase::persistenceThresholding	(	ftm::FTMTree_MT *	tree,
		double	persistenceThresholdT
	)

inline

Definition at line 410 of file MergeTreeBase.h.

◆ persistenceThresholding() [3/4]

template<class dataType >

void ttk::MergeTreeBase::persistenceThresholding	(	ftm::FTMTree_MT *	tree,
		double	persistenceThresholdT,
		std::vector< ftm::idNode > &	deletedNodes
	)

inline

Definition at line 367 of file MergeTreeBase.h.

◆ persistenceThresholding() [4/4]

template<class dataType >

void ttk::MergeTreeBase::persistenceThresholding	(	ftm::FTMTree_MT *	tree,
		std::vector< ftm::idNode > &	deletedNodes
	)

inline

Definition at line 403 of file MergeTreeBase.h.

◆ postprocessingPipeline()

template<class dataType >

void ttk::MergeTreeBase::postprocessingPipeline ( ftm::FTMTree_MT * tree )

inline

Definition at line 1003 of file MergeTreeBase.h.

◆ preprocessingPipeline() [1/2]

template<class dataType >

void ttk::MergeTreeBase::preprocessingPipeline	(	ftm::MergeTree< dataType > &	mTree,
		double	epsilonTree,
		double	epsilon2Tree,
		double	epsilon3Tree,
		bool	branchDecompositionT,
		bool	useMinMaxPairT,
		bool	cleanTreeT,
		double	persistenceThreshold,
		std::vector< int > &	nodeCorr,
		bool	deleteInconsistentNodes = `true`
	)

inline

Definition at line 630 of file MergeTreeBase.h.

◆ preprocessingPipeline() [2/2]

template<class dataType >

void ttk::MergeTreeBase::preprocessingPipeline	(	ftm::MergeTree< dataType > &	mTree,
		double	epsilonTree,
		double	epsilon2Tree,
		double	epsilon3Tree,
		bool	branchDecompositionT,
		bool	useMinMaxPairT,
		bool	cleanTreeT,
		std::vector< int > &	nodeCorr,
		bool	deleteInconsistentNodes = `true`
	)

inline

Definition at line 696 of file MergeTreeBase.h.

◆ preprocessTree()

template<class dataType >

void ttk::MergeTreeBase::preprocessTree	(	ftm::FTMTree_MT *	tree,
		bool	deleteInconsistentNodes = `true`
	)

inline

Definition at line 446 of file MergeTreeBase.h.

◆ printMatching() [1/3]

void ttk::MergeTreeBase::printMatching ( std::vector< MatchingType > & matchings )

inline

Definition at line 1338 of file MergeTreeBase.h.

◆ printMatching() [2/3]

void ttk::MergeTreeBase::printMatching ( std::vector< std::tuple< ftm::idNode, ftm::idNode > > & matchings )

inline

Definition at line 1360 of file MergeTreeBase.h.

◆ printMatching() [3/3]

void ttk::MergeTreeBase::printMatching ( std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > & matchings )

inline

Definition at line 1349 of file MergeTreeBase.h.

◆ printOutputMatching()

template<class dataType >

void ttk::MergeTreeBase::printOutputMatching	(	std::vector< std::tuple< ftm::idNode, ftm::idNode > > &	outputMatching,
		ftm::FTMTree_MT *	tree1,
		ftm::FTMTree_MT *	tree2,
		bool	computeCosts = `true`
	)

inline

Definition at line 1384 of file MergeTreeBase.h.

◆ printPairs()

template<class dataType >

void ttk::MergeTreeBase::printPairs ( std::vector< std::tuple< SimplexId, SimplexId, dataType > > & treePairs )

inline

Definition at line 1372 of file MergeTreeBase.h.

◆ printTable()

template<class dataType >

void ttk::MergeTreeBase::printTable	(	dataType *	table,
		int	nRows,
		int	nCols
	)

inline

Definition at line 1330 of file MergeTreeBase.h.

◆ printTableVector()

template<class dataType >

void ttk::MergeTreeBase::printTableVector ( std::vector< std::vector< dataType > > & table )

inline

Definition at line 1307 of file MergeTreeBase.h.

◆ printTreesStats() [1/2]

void ttk::MergeTreeBase::printTreesStats ( std::vector< ftm::FTMTree_MT * > & trees )

inline

Definition at line 1288 of file MergeTreeBase.h.

◆ printTreesStats() [2/2]

template<class dataType >

void ttk::MergeTreeBase::printTreesStats ( std::vector< ftm::MergeTree< dataType > > & trees )

inline

Definition at line 1300 of file MergeTreeBase.h.

◆ putBackMergedNodes()

template<class dataType >

void ttk::MergeTreeBase::putBackMergedNodes ( ftm::FTMTree_MT * tree )

inline

Definition at line 949 of file MergeTreeBase.h.

◆ relabelCost()

template<class dataType >

dataType ttk::MergeTreeBase::relabelCost	(	ftm::FTMTree_MT *	tree1,
		ftm::idNode	nodeId1,
		ftm::FTMTree_MT *	tree2,
		ftm::idNode	nodeId2
	)

inline

Definition at line 1178 of file MergeTreeBase.h.

◆ relabelCostOnly()

template<class dataType >

dataType ttk::MergeTreeBase::relabelCostOnly	(	ftm::FTMTree_MT *	tree1,
		ftm::idNode	nodeId1,
		ftm::FTMTree_MT *	tree2,
		ftm::idNode	nodeId2
	)

inline

Definition at line 1147 of file MergeTreeBase.h.

◆ reverseNodeCorr()

void ttk::MergeTreeBase::reverseNodeCorr	(	ftm::FTMTree_MT *	tree,
		std::vector< int > &	nodeCorr
	)

inline

Definition at line 711 of file MergeTreeBase.h.

◆ setAssignmentSolver()

void ttk::MergeTreeBase::setAssignmentSolver ( int assignmentSolver )

inline

Definition at line 70 of file MergeTreeBase.h.

◆ setBarycenterMergeTree()

void ttk::MergeTreeBase::setBarycenterMergeTree ( bool imt )

inline

Definition at line 130 of file MergeTreeBase.h.

◆ setBranchDecomposition()

void ttk::MergeTreeBase::setBranchDecomposition ( bool useBD )

inline

Definition at line 114 of file MergeTreeBase.h.

◆ setCleanTree()

void ttk::MergeTreeBase::setCleanTree ( bool clean )

inline

Definition at line 146 of file MergeTreeBase.h.

◆ setDeleteMultiPersPairs()

void ttk::MergeTreeBase::setDeleteMultiPersPairs ( bool deleteMultiPersPairsT )

inline

Definition at line 142 of file MergeTreeBase.h.

◆ setDistanceSquaredRoot()

void ttk::MergeTreeBase::setDistanceSquaredRoot ( bool distanceSquaredRoot )

inline

Definition at line 134 of file MergeTreeBase.h.

◆ setEpsilon1UseFarthestSaddle()

void ttk::MergeTreeBase::setEpsilon1UseFarthestSaddle ( bool b )

inline

Definition at line 74 of file MergeTreeBase.h.

◆ setEpsilon2Tree1()

void ttk::MergeTreeBase::setEpsilon2Tree1 ( double epsilon )

inline

Definition at line 86 of file MergeTreeBase.h.

◆ setEpsilon2Tree2()

void ttk::MergeTreeBase::setEpsilon2Tree2 ( double epsilon )

inline

Definition at line 90 of file MergeTreeBase.h.

◆ setEpsilon3Tree1()

void ttk::MergeTreeBase::setEpsilon3Tree1 ( double epsilon )

inline

Definition at line 94 of file MergeTreeBase.h.

◆ setEpsilon3Tree2()

void ttk::MergeTreeBase::setEpsilon3Tree2 ( double epsilon )

inline

Definition at line 98 of file MergeTreeBase.h.

◆ setEpsilonTree1()

void ttk::MergeTreeBase::setEpsilonTree1 ( double epsilon )

inline

Definition at line 78 of file MergeTreeBase.h.

◆ setEpsilonTree2()

void ttk::MergeTreeBase::setEpsilonTree2 ( double epsilon )

inline

Definition at line 82 of file MergeTreeBase.h.

◆ setIsPersistenceDiagram()

void ttk::MergeTreeBase::setIsPersistenceDiagram ( bool isPD )

inline

Definition at line 150 of file MergeTreeBase.h.

◆ setKeepSubtree()

void ttk::MergeTreeBase::setKeepSubtree ( bool keepSubtree )

inline

Definition at line 122 of file MergeTreeBase.h.

◆ setNodePerTask()

void ttk::MergeTreeBase::setNodePerTask ( int npt )

inline

Definition at line 110 of file MergeTreeBase.h.

◆ setNonMatchingWeight()

void ttk::MergeTreeBase::setNonMatchingWeight ( double weight )

inline

Definition at line 126 of file MergeTreeBase.h.

◆ setNormalizedWasserstein()

void ttk::MergeTreeBase::setNormalizedWasserstein ( bool normalizedWasserstein )

inline

Definition at line 118 of file MergeTreeBase.h.

◆ setParallelize()

void ttk::MergeTreeBase::setParallelize ( bool para )

inline

Definition at line 106 of file MergeTreeBase.h.

◆ setParamValueFromName()

void ttk::MergeTreeBase::setParamValueFromName	(	std::string &	paramName,
		double	value
	)

inline

Definition at line 1245 of file MergeTreeBase.h.

◆ setPersistenceThreshold()

void ttk::MergeTreeBase::setPersistenceThreshold ( double pt )

inline

Definition at line 102 of file MergeTreeBase.h.

◆ setUseMinMaxPair()

void ttk::MergeTreeBase::setUseMinMaxPair ( bool useMinMaxPair )

inline

Definition at line 138 of file MergeTreeBase.h.

◆ verifyOrigins()

template<class dataType >

void ttk::MergeTreeBase::verifyOrigins ( ftm::FTMTree_MT * tree )

inline

Definition at line 425 of file MergeTreeBase.h.

◆ verifyPairsTree()

void ttk::MergeTreeBase::verifyPairsTree ( ftm::FTMTree_MT * tree )

inline

Definition at line 604 of file MergeTreeBase.h.

Member Data Documentation

◆ assignmentSolverID_

int ttk::MergeTreeBase::assignmentSolverID_ = 0

protected

Definition at line 26 of file MergeTreeBase.h.

◆ barycenterMergeTree_

bool ttk::MergeTreeBase::barycenterMergeTree_ = false

protected

Definition at line 35 of file MergeTreeBase.h.

◆ branchDecomposition_

bool ttk::MergeTreeBase::branchDecomposition_ = true

protected

Definition at line 39 of file MergeTreeBase.h.

◆ cleanTree_

bool ttk::MergeTreeBase::cleanTree_ = true

protected

Definition at line 58 of file MergeTreeBase.h.

◆ convertToDiagram_

bool ttk::MergeTreeBase::convertToDiagram_ = false

protected

Definition at line 49 of file MergeTreeBase.h.

◆ deleteMultiPersPairs_

bool ttk::MergeTreeBase::deleteMultiPersPairs_ = false

protected

Definition at line 37 of file MergeTreeBase.h.

◆ distanceSquaredRoot_

bool ttk::MergeTreeBase::distanceSquaredRoot_ = true

protected

Definition at line 45 of file MergeTreeBase.h.

◆ epsilon1UseFarthestSaddle_

bool ttk::MergeTreeBase::epsilon1UseFarthestSaddle_ = false

protected

Definition at line 27 of file MergeTreeBase.h.

◆ epsilon2Tree1_

double ttk::MergeTreeBase::epsilon2Tree1_ = 100

protected

Definition at line 30 of file MergeTreeBase.h.

◆ epsilon2Tree2_

double ttk::MergeTreeBase::epsilon2Tree2_ = 100

protected

Definition at line 31 of file MergeTreeBase.h.

◆ epsilon3Tree1_

double ttk::MergeTreeBase::epsilon3Tree1_ = 100

protected

Definition at line 32 of file MergeTreeBase.h.

◆ epsilon3Tree2_

double ttk::MergeTreeBase::epsilon3Tree2_ = 100

protected

Definition at line 33 of file MergeTreeBase.h.

◆ epsilonTree1_

double ttk::MergeTreeBase::epsilonTree1_ = 0

protected

Definition at line 28 of file MergeTreeBase.h.

◆ epsilonTree2_

double ttk::MergeTreeBase::epsilonTree2_ = 0

protected

Definition at line 29 of file MergeTreeBase.h.

◆ isPersistenceDiagram_

bool ttk::MergeTreeBase::isPersistenceDiagram_ = false

protected

Definition at line 48 of file MergeTreeBase.h.

◆ keepSubtree_

bool ttk::MergeTreeBase::keepSubtree_ = false

protected

Definition at line 42 of file MergeTreeBase.h.

◆ mixtureCoefficient_

double ttk::MergeTreeBase::mixtureCoefficient_ = 0.5

protected

Definition at line 52 of file MergeTreeBase.h.

◆ nodePerTask_

int ttk::MergeTreeBase::nodePerTask_ = 32

protected

Definition at line 57 of file MergeTreeBase.h.

◆ nonMatchingWeight_

double ttk::MergeTreeBase::nonMatchingWeight_ = 1.0

protected

Definition at line 43 of file MergeTreeBase.h.

◆ normalizedWasserstein_

bool ttk::MergeTreeBase::normalizedWasserstein_ = true

protected

Definition at line 41 of file MergeTreeBase.h.

◆ parallelize_

bool ttk::MergeTreeBase::parallelize_ = true

protected

Definition at line 56 of file MergeTreeBase.h.

◆ persistenceThreshold_

double ttk::MergeTreeBase::persistenceThreshold_ = 0

protected

Definition at line 34 of file MergeTreeBase.h.

◆ treesNodeCorr_

std::vector<std::vector<int> > ttk::MergeTreeBase::treesNodeCorr_

protected

Definition at line 61 of file MergeTreeBase.h.

◆ useDoubleInput_

bool ttk::MergeTreeBase::useDoubleInput_ = false

protected

Definition at line 53 of file MergeTreeBase.h.

◆ useFullMerge_

bool ttk::MergeTreeBase::useFullMerge_ = false

protected

Definition at line 46 of file MergeTreeBase.h.

◆ useMinMaxPair_

bool ttk::MergeTreeBase::useMinMaxPair_ = true

protected

Definition at line 36 of file MergeTreeBase.h.

◆ wassersteinPower_

int ttk::MergeTreeBase::wassersteinPower_ = 2

protected

Definition at line 40 of file MergeTreeBase.h.

The documentation for this class was generated from the following file:

/home/julien/Pro/git/github/ttk-tierny/core/base/mergeTreeClustering/MergeTreeBase.h

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MergeTreeBase()

Member Function Documentation

◆ branchDecompositionToTree()

◆ computeBranchDecomposition()

◆ computeDistance()

◆ convertBranchDecompositionMatching() [1/2]

◆ convertBranchDecompositionMatching() [2/2]

◆ copyMinMaxPair()

◆ deleteCost()

◆ deleteMultiPersPairs()

◆ dontUseMinMaxPair()

◆ fixMergedRootOrigin()

◆ getParamNames()

◆ getParamValueFromName()

◆ getSizeLimitMetric()

◆ getTreesNodeCorr()

◆ getTreesStats()

◆ identifyRealMatching()

◆ insertCost()

◆ keepMostImportantPairs()

◆ mergeSaddle()

◆ mixDistances()

◆ mixDistancesMatrix()

◆ mixDistancesMinMaxPairWeight()

◆ mixDistancesWeight()

◆ mtFlattening()

◆ mtsFlattening()

◆ persistenceMerging()

◆ persistenceThresholding() [1/4]

◆ persistenceThresholding() [2/4]

◆ persistenceThresholding() [3/4]

◆ persistenceThresholding() [4/4]

◆ postprocessingPipeline()

◆ preprocessingPipeline() [1/2]

◆ preprocessingPipeline() [2/2]

◆ preprocessTree()

◆ printMatching() [1/3]

◆ printMatching() [2/3]

◆ printMatching() [3/3]

◆ printOutputMatching()

◆ printPairs()

◆ printTable()

◆ printTableVector()

◆ printTreesStats() [1/2]

◆ printTreesStats() [2/2]

◆ putBackMergedNodes()

◆ relabelCost()

◆ relabelCostOnly()

◆ reverseNodeCorr()

◆ setAssignmentSolver()

◆ setBarycenterMergeTree()

◆ setBranchDecomposition()

◆ setCleanTree()

◆ setDeleteMultiPersPairs()

◆ setDistanceSquaredRoot()

◆ setEpsilon1UseFarthestSaddle()

◆ setEpsilon2Tree1()

◆ setEpsilon2Tree2()

◆ setEpsilon3Tree1()

◆ setEpsilon3Tree2()

◆ setEpsilonTree1()

◆ setEpsilonTree2()

◆ setIsPersistenceDiagram()

◆ setKeepSubtree()

◆ setNodePerTask()

◆ setNonMatchingWeight()

◆ setNormalizedWasserstein()

◆ setParallelize()

◆ setParamValueFromName()

◆ setPersistenceThreshold()

◆ setUseMinMaxPair()

◆ verifyOrigins()

◆ verifyPairsTree()

Member Data Documentation

◆ assignmentSolverID_