TTK processing package for progressive Topological Data Analysis. More...

#include <MultiresTopology.h>

Inheritance diagram for ttk::MultiresTopology:

Classes
struct	PersistencePair

Public Member Functions
	MultiresTopology ()

void	setupTriangulation (ImplicitTriangulation *const data)

virtual void	setStartingDecimationLevel (int data)

virtual void	setStoppingDecimationLevel (int data)

virtual void	setPreallocateMemory (const bool b)

int	getStoppingDecimationLevel ()

void	setStartingResolutionLevel (int rl)

void	setStoppingResolutionLevel (int rl)

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Protected Types
using	VLBoundaryType = std::array< std::vector< std::pair< SimplexId, SimplexId > >, nLink_ >

Protected Member Functions
void	buildVertexLinkByBoundary (const SimplexId vertexId, VLBoundaryType &vlbt) const

char	getCriticalTypeFromLink (const std::vector< std::pair< polarity, polarity > > &vlp, DynamicTree &link) const

void	getValencesFromLink (const SimplexId vertexId, const std::vector< std::pair< polarity, polarity > > &vlp, DynamicTree &link, std::vector< polarity > &toPropagateMin, std::vector< polarity > &toPropagateMax, std::vector< std::vector< SimplexId > > &saddleCCMin, std::vector< std::vector< SimplexId > > &saddleCCMax) const

void	getTripletsFromSaddles (const SimplexId vertexId, std::vector< triplet > &triplets, const std::vector< std::vector< SimplexId > > &vertexReps) const

void	updateLinkPolarityPonctual (std::vector< std::pair< polarity, polarity > > &vlp) const

std::string	resolutionInfoString ()

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Attributes
ImplicitTriangulation *	triangulation_ {}

MultiresTriangulation	multiresTriangulation_ {}

SimplexId	globalMax_ {}

SimplexId	globalMin_ {}

int	decimationLevel_ {}

int	startingDecimationLevel_ {}

int	stoppingDecimationLevel_ {}

bool	preallocateMemory_ {true}

std::vector< PersistencePair >	CTDiagram_ {}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Static Protected Attributes
static const size_t	nLink_ = 27

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK processing package for progressive Topological Data Analysis.

Author: Jules Vidal jules.nosp@m..vid.nosp@m.al@li.nosp@m.p6.f.nosp@m.r; Pierre Guillou pierr.nosp@m.e.gu.nosp@m.illou.nosp@m.@lip.nosp@m.6.fr

Date: 2022.

This package introduces a multiresolution hierarchical representation of the data.

It allows the definition of efficient algorithms for approximate or progressive computation in TDA.

Definition at line 50 of file MultiresTopology.h.

Member Typedef Documentation

◆ VLBoundaryType

using ttk::MultiresTopology::VLBoundaryType = std::array<std::vector<std::pair<SimplexId, SimplexId> >, nLink_>

protected

Definition at line 103 of file MultiresTopology.h.

Constructor & Destructor Documentation

◆ MultiresTopology()

ttk::MultiresTopology::MultiresTopology ( )

inline

Definition at line 69 of file MultiresTopology.h.

Member Function Documentation

◆ buildVertexLinkByBoundary()

void ttk::MultiresTopology::buildVertexLinkByBoundary	(	const SimplexId	vertexId,
		VLBoundaryType &	vlbt
	)		const

protected

Definition at line 53 of file MultiresTopology.cpp.

◆ getCriticalTypeFromLink()

char ttk::MultiresTopology::getCriticalTypeFromLink	(	const std::vector< std::pair< polarity, polarity > > &	vlp,
		DynamicTree &	link
	)		const

protected

Definition at line 98 of file MultiresTopology.cpp.

◆ getStoppingDecimationLevel()

int ttk::MultiresTopology::getStoppingDecimationLevel ( )

inline

Definition at line 87 of file MultiresTopology.h.

◆ getTripletsFromSaddles()

void ttk::MultiresTopology::getTripletsFromSaddles	(	const SimplexId	vertexId,
		std::vector< triplet > &	triplets,
		const std::vector< std::vector< SimplexId > > &	vertexReps
	)		const

protected

Definition at line 73 of file MultiresTopology.cpp.

◆ getValencesFromLink()

void ttk::MultiresTopology::getValencesFromLink	(	const SimplexId	vertexId,
		const std::vector< std::pair< polarity, polarity > > &	vlp,
		DynamicTree &	link,
		std::vector< polarity > &	toPropagateMin,
		std::vector< polarity > &	toPropagateMax,
		std::vector< std::vector< SimplexId > > &	saddleCCMin,
		std::vector< std::vector< SimplexId > > &	saddleCCMax
	)		const

protected

Definition at line 3 of file MultiresTopology.cpp.

◆ resolutionInfoString()

std::string ttk::MultiresTopology::resolutionInfoString ( )

protected

Definition at line 162 of file MultiresTopology.cpp.

◆ setPreallocateMemory()

virtual void ttk::MultiresTopology::setPreallocateMemory ( const bool b )

inlinevirtual

Reimplemented in ttk::ProgressiveTopology.

Definition at line 84 of file MultiresTopology.h.

◆ setStartingDecimationLevel()

virtual void ttk::MultiresTopology::setStartingDecimationLevel ( int data )

inlinevirtual

Reimplemented in ttk::ProgressiveTopology.

Definition at line 78 of file MultiresTopology.h.

◆ setStartingResolutionLevel()

void ttk::MultiresTopology::setStartingResolutionLevel ( int rl )

inline

Definition at line 91 of file MultiresTopology.h.

◆ setStoppingDecimationLevel()

virtual void ttk::MultiresTopology::setStoppingDecimationLevel ( int data )

inlinevirtual

Reimplemented in ttk::ProgressiveTopology.

Definition at line 81 of file MultiresTopology.h.

◆ setStoppingResolutionLevel()

void ttk::MultiresTopology::setStoppingResolutionLevel ( int rl )

inline

Definition at line 95 of file MultiresTopology.h.

◆ setupTriangulation()

void ttk::MultiresTopology::setupTriangulation ( ImplicitTriangulation *const data )

inline

Definition at line 73 of file MultiresTopology.h.

◆ updateLinkPolarityPonctual()

void ttk::MultiresTopology::updateLinkPolarityPonctual ( std::vector< std::pair< polarity, polarity > > & vlp ) const

protected

Definition at line 172 of file MultiresTopology.cpp.

Member Data Documentation

◆ CTDiagram_

std::vector<PersistencePair> ttk::MultiresTopology::CTDiagram_ {}

protected

Definition at line 144 of file MultiresTopology.h.

◆ decimationLevel_

int ttk::MultiresTopology::decimationLevel_ {}

protected

Definition at line 140 of file MultiresTopology.h.

◆ globalMax_

SimplexId ttk::MultiresTopology::globalMax_ {}

mutableprotected

Definition at line 138 of file MultiresTopology.h.

◆ globalMin_

SimplexId ttk::MultiresTopology::globalMin_ {}

protected

Definition at line 138 of file MultiresTopology.h.

◆ multiresTriangulation_

MultiresTriangulation ttk::MultiresTopology::multiresTriangulation_ {}

protected

Definition at line 134 of file MultiresTopology.h.

◆ nLink_

const size_t ttk::MultiresTopology::nLink_ = 27

staticprotected

Definition at line 101 of file MultiresTopology.h.

◆ preallocateMemory_

bool ttk::MultiresTopology::preallocateMemory_ {true}

protected

Definition at line 143 of file MultiresTopology.h.

◆ startingDecimationLevel_

int ttk::MultiresTopology::startingDecimationLevel_ {}

protected

Definition at line 141 of file MultiresTopology.h.

◆ stoppingDecimationLevel_

int ttk::MultiresTopology::stoppingDecimationLevel_ {}

protected

Definition at line 142 of file MultiresTopology.h.

◆ triangulation_

ImplicitTriangulation* ttk::MultiresTopology::triangulation_ {}

protected

Definition at line 132 of file MultiresTopology.h.

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/ttk-tierny/core/base/multiresTopology/MultiresTopology.h
/home/julien/Pro/git/github/ttk-tierny/core/base/multiresTopology/MultiresTopology.cpp

Classes

Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

Member Typedef Documentation

◆ VLBoundaryType

Constructor & Destructor Documentation

◆ MultiresTopology()

Member Function Documentation

◆ buildVertexLinkByBoundary()

◆ getCriticalTypeFromLink()

◆ getStoppingDecimationLevel()

◆ getTripletsFromSaddles()

◆ getValencesFromLink()

◆ resolutionInfoString()

◆ setPreallocateMemory()

◆ setStartingDecimationLevel()

◆ setStartingResolutionLevel()

◆ setStoppingDecimationLevel()

◆ setStoppingResolutionLevel()

◆ setupTriangulation()

◆ updateLinkPolarityPonctual()

Member Data Documentation

◆ CTDiagram_

◆ decimationLevel_

◆ globalMax_

◆ globalMin_

◆ multiresTriangulation_

◆ nLink_

◆ preallocateMemory_

◆ startingDecimationLevel_

◆ stoppingDecimationLevel_

◆ triangulation_