TTK processing package for the computation of a Dictionary of Persistence Diagrams and barycentric weights to approximate an ensemble of Persistence Diagrams. More...

#include <PersistenceDiagramDictionaryDecoding.h>

Inheritance diagram for ttk::PersistenceDiagramDictionaryDecoding:

Public Types
enum class	BACKEND { MDS = 0 , DICTIONARY = 1 }

Public Member Functions
	PersistenceDiagramDictionaryDecoding ()

void	execute (std::vector< DiagramType > &dictDiagrams, std::vector< std::vector< double > > &vectorWeights, std::vector< DiagramType > &Barycenters) const

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Protected Member Functions
void	computeAtomsCoordinates (std::vector< ttk::DiagramType > &atoms, const std::vector< std::vector< double > > &vectorWeights, std::vector< std::array< double, 3 > > &coords, std::vector< std::array< double, 3 > > &trueCoords, std::vector< double > &xVector, std::vector< double > &yVector, std::vector< double > &zVector, const double spacing, const size_t nAtoms) const

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Attributes
BACKEND	ProjMet {BACKEND::MDS}

bool	ProgBarycenter {false}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Additional Inherited Members
Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK processing package for the computation of a Dictionary of Persistence Diagrams and barycentric weights to approximate an ensemble of Persistence Diagrams.

Author: Keanu Sisouk keanu.nosp@m..sis.nosp@m.ouk@l.nosp@m.ip6..nosp@m.fr; Pierre Guillou pierr.nosp@m.e.gu.nosp@m.illou.nosp@m.@lip.nosp@m.6.fr

Date: May 2023

Related publication
"Wasserstein Dictionaries of Persistence Diagrams"
Keanu Sisouk, Julie Delon and Julien Tierny
IEEE Transactions on Visualization and Computer Graphics, 2024.

See also: PersistenceDiagramDictionary

Online examples:

Persistence Diagram Dictionary example

Definition at line 39 of file PersistenceDiagramDictionaryDecoding.h.

Member Enumeration Documentation

◆ BACKEND

enum class ttk::PersistenceDiagramDictionaryDecoding::BACKEND

strong

Enumerator
MDS
DICTIONARY

Definition at line 42 of file PersistenceDiagramDictionaryDecoding.h.

Constructor & Destructor Documentation

◆ PersistenceDiagramDictionaryDecoding()

ttk::PersistenceDiagramDictionaryDecoding::PersistenceDiagramDictionaryDecoding ( )

inline

Definition at line 44 of file PersistenceDiagramDictionaryDecoding.h.

Member Function Documentation

◆ computeAtomsCoordinates()

void ttk::PersistenceDiagramDictionaryDecoding::computeAtomsCoordinates	(	std::vector< ttk::DiagramType > &	atoms,
		const std::vector< std::vector< double > > &	vectorWeights,
		std::vector< std::array< double, 3 > > &	coords,
		std::vector< std::array< double, 3 > > &	trueCoords,
		std::vector< double > &	xVector,
		std::vector< double > &	yVector,
		std::vector< double > &	zVector,
		const double	spacing,
		const size_t	nAtoms ) const

protected

Definition at line 28 of file PersistenceDiagramDictionaryDecoding.cpp.

◆ execute()

void ttk::PersistenceDiagramDictionaryDecoding::execute	(	std::vector< DiagramType > &	dictDiagrams,
		std::vector< std::vector< double > > &	vectorWeights,
		std::vector< DiagramType > &	Barycenters ) const

Definition at line 6 of file PersistenceDiagramDictionaryDecoding.cpp.

Member Data Documentation

◆ ProgBarycenter

bool ttk::PersistenceDiagramDictionaryDecoding::ProgBarycenter {false}

protected

Definition at line 54 of file PersistenceDiagramDictionaryDecoding.h.

◆ ProjMet

BACKEND ttk::PersistenceDiagramDictionaryDecoding::ProjMet {BACKEND::MDS}

protected

Definition at line 53 of file PersistenceDiagramDictionaryDecoding.h.

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/ttk-tierny/core/base/persistenceDiagramDictionaryDecoding/PersistenceDiagramDictionaryDecoding.h
/home/julien/Pro/git/github/ttk-tierny/core/base/persistenceDiagramDictionaryDecoding/PersistenceDiagramDictionaryDecoding.cpp

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ BACKEND

Constructor & Destructor Documentation

◆ PersistenceDiagramDictionaryDecoding()

Member Function Documentation

◆ computeAtomsCoordinates()

◆ execute()

Member Data Documentation

◆ ProgBarycenter

◆ ProjMet