#include <PersistenceDiagramDistanceMatrix.h>

Inheritance diagram for ttk::PersistenceDiagramDistanceMatrix:

Public Member Functions
	PersistenceDiagramDistanceMatrix ()

std::vector< std::vector< double > >	execute (const std::vector< DiagramType > &intermediateDiagrams, const std::array< size_t, 2 > &nInputs) const

void	setWasserstein (const int data)

void	setDos (const bool min, const bool sad, const bool max)

void	setAlpha (const double alpha)

void	setLambda (const double lambda)

void	setDeltaLim (const double deltaLim)

void	setMaxNumberOfPairs (const size_t data)

void	setMinPersistence (const double data)

void	setConstraint (const int data)

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Protected Types
enum class	ConstraintType { FULL_DIAGRAMS , NUMBER_PAIRS , ABSOLUTE_PERSISTENCE , RELATIVE_PERSISTENCE_PER_DIAG , RELATIVE_PERSISTENCE_GLOBAL }

Protected Member Functions
double	getMostPersistent (const std::vector< BidderDiagram > &bidder_diags) const

double	computePowerDistance (const BidderDiagram &D1, const BidderDiagram &D2) const

void	getDiagramsDistMat (const std::array< size_t, 2 > &nInputs, std::vector< std::vector< double > > &distanceMatrix, const std::vector< BidderDiagram > &diags_min, const std::vector< BidderDiagram > &diags_sad, const std::vector< BidderDiagram > &diags_max) const

void	setBidderDiagrams (const size_t nInputs, std::vector< DiagramType > &inputDiagrams, std::vector< BidderDiagram > &bidder_diags) const

void	enrichCurrentBidderDiagrams (const std::vector< BidderDiagram > &bidder_diags, std::vector< BidderDiagram > &current_bidder_diags, const std::vector< double > &maxDiagPersistence) const

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Attributes
int	Wasserstein {2}

double	Alpha {1.0}

double	DeltaLim {0.01}

double	Lambda

size_t	MaxNumberOfPairs {20}

double	MinPersistence {0.1}

bool	do_min_ {true}

bool	do_sad_ {true}

bool	do_max_ {true}

ConstraintType	Constraint {ConstraintType::RELATIVE_PERSISTENCE_GLOBAL}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Additional Inherited Members
Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

Author: Jules Vidal jules.nosp@m..vid.nosp@m.al@li.nosp@m.p6.f.nosp@m.r; Pierre Guillou pierr.nosp@m.e.gu.nosp@m.illou.nosp@m.@lip.nosp@m.6.fr

Date: March 2020

Related publication
"Progressive Wasserstein Barycenters of Persistence Diagrams"
Jules Vidal, Joseph Budin and Julien Tierny
Proc. of IEEE VIS 2019.
IEEE Transactions on Visualization and Computer Graphics, 2019.

See also: PersistenceDiagramClustering

Online examples:

Clustering Kelvin Helmholtz Instabilities example

Definition at line 30 of file PersistenceDiagramDistanceMatrix.h.

Member Enumeration Documentation

◆ ConstraintType

enum class ttk::PersistenceDiagramDistanceMatrix::ConstraintType

strongprotected

Enumerator
FULL_DIAGRAMS
NUMBER_PAIRS
ABSOLUTE_PERSISTENCE
RELATIVE_PERSISTENCE_PER_DIAG
RELATIVE_PERSISTENCE_GLOBAL

Definition at line 110 of file PersistenceDiagramDistanceMatrix.h.

Constructor & Destructor Documentation

◆ PersistenceDiagramDistanceMatrix()

ttk::PersistenceDiagramDistanceMatrix::PersistenceDiagramDistanceMatrix ( )

inline

Definition at line 33 of file PersistenceDiagramDistanceMatrix.h.

Member Function Documentation

◆ computePowerDistance()

double PersistenceDiagramDistanceMatrix::computePowerDistance	(	const BidderDiagram &	D1,
		const BidderDiagram &	D2
	)		const

protected

Definition at line 154 of file PersistenceDiagramDistanceMatrix.cpp.

◆ enrichCurrentBidderDiagrams()

void PersistenceDiagramDistanceMatrix::enrichCurrentBidderDiagrams	(	const std::vector< BidderDiagram > &	bidder_diags,
		std::vector< BidderDiagram > &	current_bidder_diags,
		const std::vector< double > &	maxDiagPersistence
	)		const

protected

Definition at line 261 of file PersistenceDiagramDistanceMatrix.cpp.

◆ execute()

std::vector< std::vector< double > > PersistenceDiagramDistanceMatrix::execute	(	const std::vector< DiagramType > &	intermediateDiagrams,
		const std::array< size_t, 2 > &	nInputs
	)		const

Definition at line 8 of file PersistenceDiagramDistanceMatrix.cpp.

◆ getDiagramsDistMat()

void PersistenceDiagramDistanceMatrix::getDiagramsDistMat	(	const std::array< size_t, 2 > &	nInputs,
		std::vector< std::vector< double > > &	distanceMatrix,
		const std::vector< BidderDiagram > &	diags_min,
		const std::vector< BidderDiagram > &	diags_sad,
		const std::vector< BidderDiagram > &	diags_max
	)		const

protected

Definition at line 172 of file PersistenceDiagramDistanceMatrix.cpp.

◆ getMostPersistent()

double PersistenceDiagramDistanceMatrix::getMostPersistent ( const std::vector< BidderDiagram > & bidder_diags ) const

protected

Definition at line 137 of file PersistenceDiagramDistanceMatrix.cpp.

◆ setAlpha()

void ttk::PersistenceDiagramDistanceMatrix::setAlpha ( const double alpha )

inline

Definition at line 49 of file PersistenceDiagramDistanceMatrix.h.

◆ setBidderDiagrams()

void PersistenceDiagramDistanceMatrix::setBidderDiagrams	(	const size_t	nInputs,
		std::vector< DiagramType > &	inputDiagrams,
		std::vector< BidderDiagram > &	bidder_diags
	)		const

protected

Definition at line 237 of file PersistenceDiagramDistanceMatrix.cpp.

◆ setConstraint()

void ttk::PersistenceDiagramDistanceMatrix::setConstraint ( const int data )

inline

Definition at line 64 of file PersistenceDiagramDistanceMatrix.h.

◆ setDeltaLim()

void ttk::PersistenceDiagramDistanceMatrix::setDeltaLim ( const double deltaLim )

inline

Definition at line 55 of file PersistenceDiagramDistanceMatrix.h.

◆ setDos()

void ttk::PersistenceDiagramDistanceMatrix::setDos	(	const bool	min,
		const bool	sad,
		const bool	max
	)

inline

Definition at line 44 of file PersistenceDiagramDistanceMatrix.h.

◆ setLambda()

void ttk::PersistenceDiagramDistanceMatrix::setLambda ( const double lambda )

inline

Definition at line 52 of file PersistenceDiagramDistanceMatrix.h.

◆ setMaxNumberOfPairs()

void ttk::PersistenceDiagramDistanceMatrix::setMaxNumberOfPairs ( const size_t data )

inline

Definition at line 58 of file PersistenceDiagramDistanceMatrix.h.

◆ setMinPersistence()

void ttk::PersistenceDiagramDistanceMatrix::setMinPersistence ( const double data )

inline

Definition at line 61 of file PersistenceDiagramDistanceMatrix.h.

◆ setWasserstein()

void ttk::PersistenceDiagramDistanceMatrix::setWasserstein ( const int data )

inline

Definition at line 41 of file PersistenceDiagramDistanceMatrix.h.

Member Data Documentation

◆ Alpha

double ttk::PersistenceDiagramDistanceMatrix::Alpha {1.0}

protected

Definition at line 98 of file PersistenceDiagramDistanceMatrix.h.

◆ Constraint

ConstraintType ttk::PersistenceDiagramDistanceMatrix::Constraint {ConstraintType::RELATIVE_PERSISTENCE_GLOBAL}

protected

Definition at line 117 of file PersistenceDiagramDistanceMatrix.h.

◆ DeltaLim

double ttk::PersistenceDiagramDistanceMatrix::DeltaLim {0.01}

protected

Definition at line 99 of file PersistenceDiagramDistanceMatrix.h.

◆ do_max_

bool ttk::PersistenceDiagramDistanceMatrix::do_max_ {true}

protected

Definition at line 108 of file PersistenceDiagramDistanceMatrix.h.

◆ do_min_

bool ttk::PersistenceDiagramDistanceMatrix::do_min_ {true}

protected

Definition at line 108 of file PersistenceDiagramDistanceMatrix.h.

◆ do_sad_

bool ttk::PersistenceDiagramDistanceMatrix::do_sad_ {true}

protected

Definition at line 108 of file PersistenceDiagramDistanceMatrix.h.

◆ Lambda

double ttk::PersistenceDiagramDistanceMatrix::Lambda

protected

Definition at line 105 of file PersistenceDiagramDistanceMatrix.h.

◆ MaxNumberOfPairs

size_t ttk::PersistenceDiagramDistanceMatrix::MaxNumberOfPairs {20}

protected

Definition at line 106 of file PersistenceDiagramDistanceMatrix.h.

◆ MinPersistence

double ttk::PersistenceDiagramDistanceMatrix::MinPersistence {0.1}

protected

Definition at line 107 of file PersistenceDiagramDistanceMatrix.h.

◆ Wasserstein

int ttk::PersistenceDiagramDistanceMatrix::Wasserstein {2}

protected

Definition at line 97 of file PersistenceDiagramDistanceMatrix.h.

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/ttk-tierny/core/base/persistenceDiagramDistanceMatrix/PersistenceDiagramDistanceMatrix.h
/home/julien/Pro/git/github/ttk-tierny/core/base/persistenceDiagramDistanceMatrix/PersistenceDiagramDistanceMatrix.cpp

Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ ConstraintType

Constructor & Destructor Documentation

◆ PersistenceDiagramDistanceMatrix()

Member Function Documentation

◆ computePowerDistance()

◆ enrichCurrentBidderDiagrams()

◆ execute()

◆ getDiagramsDistMat()

◆ getMostPersistent()

◆ setAlpha()

◆ setBidderDiagrams()

◆ setConstraint()

◆ setDeltaLim()

◆ setDos()

◆ setLambda()

◆ setMaxNumberOfPairs()

◆ setMinPersistence()

◆ setWasserstein()

Member Data Documentation

◆ Alpha

◆ Constraint

◆ DeltaLim

◆ do_max_

◆ do_min_

◆ do_sad_

◆ Lambda

◆ MaxNumberOfPairs

◆ MinPersistence

◆ Wasserstein