TTK base class that executes the PairCells persistence algorithm on a Rips complex. More...

#include <PairCells.h>

Inheritance diagram for ttk::rpd::PairCells:

Public Member Functions
	PairCells (const PointCloud &points, bool distanceMatrix=false, double upperBound=inf, bool parallelSort=false, bool parallelMatrixConstruction=false)

	PairCells (float *data, int n, int dim, double upperBound=inf, bool parallelSort=false, bool parallelMatrixConstruction=false)

void	run ()

void	getDiagram (MultidimensionalDiagram &diagrams) const

void	getDiagramAndGenerators (MultidimensionalDiagram &diagrams, std::vector< Generator1 > &generators) const

void	getCascades (std::vector< Cascade > &cascades, EdgeSets3 &critical) const

void	getCascades (EdgeSets4 &critical) const

void	enrichCascades (std::set< Edge > &cascadeSet, EdgeSets4 &critical, std::vector< int > const &globalIndices) const

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Additional Inherited Members
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK base class that executes the PairCells persistence algorithm on a Rips complex.

Author: Mattéo Clémot matte.nosp@m.o.cl.nosp@m.emot@.nosp@m.univ.nosp@m.-lyon.nosp@m.1.fr

Date: September 2024.

This module defines the PairCells class that takes a point cloud and enables to compute the persistence diagram, the persistent generators and the persistent cascades of its Rips complex.

Definition at line 26 of file PairCells.h.

Constructor & Destructor Documentation

◆ PairCells() [1/2]

PairCells::PairCells	(	const PointCloud &	points,
		bool	distanceMatrix = false,
		double	upperBound = inf,
		bool	parallelSort = false,
		bool	parallelMatrixConstruction = false )

Definition at line 25 of file PairCells.cpp.

◆ PairCells() [2/2]

PairCells::PairCells	(	float *	data,
		int	n,
		int	dim,
		double	upperBound = inf,
		bool	parallelSort = false,
		bool	parallelMatrixConstruction = false )

Definition at line 52 of file PairCells.cpp.

Member Function Documentation

◆ enrichCascades()

void PairCells::enrichCascades	(	std::set< Edge > &	cascadeSet,
		EdgeSets4 &	critical,
		std::vector< int > const &	globalIndices ) const

Definition at line 361 of file PairCells.cpp.

◆ getCascades() [1/2]

void PairCells::getCascades ( EdgeSets4 & critical ) const

Definition at line 343 of file PairCells.cpp.

◆ getCascades() [2/2]

void PairCells::getCascades	(	std::vector< Cascade > &	cascades,
		EdgeSets3 &	critical ) const

Definition at line 325 of file PairCells.cpp.

◆ getDiagram()

void PairCells::getDiagram ( MultidimensionalDiagram & diagrams ) const

Definition at line 271 of file PairCells.cpp.

◆ getDiagramAndGenerators()

void PairCells::getDiagramAndGenerators	(	MultidimensionalDiagram &	diagrams,
		std::vector< Generator1 > &	generators ) const

Definition at line 294 of file PairCells.cpp.

◆ run()

void PairCells::run ( )

Definition at line 74 of file PairCells.cpp.

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/thomas/ttk-dani/core/base/ripsPersistenceDiagram/PairCells.h
/home/julien/Pro/git/github/thomas/ttk-dani/core/base/ripsPersistenceDiagram/PairCells.cpp

Public Member Functions

Additional Inherited Members