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TTK
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This is the complete list of members for ttkMergeTreeAutoencoder, including all inherited members.
| activate_ | ttk::MergeTreeAutoencoder | protected |
| activateOutputInit_ | ttk::MergeTreeAutoencoder | protected |
| activationFunction_ | ttk::MergeTreeAutoencoder | protected |
| AddInputData(vtkDataSet *) | ttkAlgorithm | |
| AddInputData(int, vtkDataSet *) | ttkAlgorithm | |
| assignmentSolverID_ | ttk::MergeTreeBase | protected |
| barycenterMergeTree_ | ttk::MergeTreeBase | protected |
| barycenterSizeLimitPercent_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| baryMatchings2_L0_ | ttk::MergeTreeAutoencoder | protected |
| baryMatchings_L0_ | ttk::MergeTreeAutoencoder | protected |
| BaseClass() | ttk::BaseClass | |
| baseRecLoss2_ | ttk::MergeTreeAutoencoder | protected |
| baseRecLoss_ | ttk::MergeTreeAutoencoder | protected |
| batchSize_ | ttk::MergeTreeAutoencoder | protected |
| bestLoss_ | ttk::MergeTreeAutoencoder | protected |
| beta1_ | ttk::MergeTreeAutoencoder | protected |
| beta2_ | ttk::MergeTreeAutoencoder | protected |
| bigValuesThreshold_ | ttk::MergeTreeAutoencoder | protected |
| branchDecomposition_ | ttk::MergeTreeBase | protected |
| branchDecompositionToTree(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| branchesCorrelationMatrix_ | ttk::MergeTreeAutoencoder | protected |
| checkEmptyMPIInput(inputType *input) | ttkAlgorithm | inline |
| checkForGlobalAndComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx) | ttkAlgorithm | |
| checkGlobalIdValidity(ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray) | ttkAlgorithm | protected |
| cleanTree_ | ttk::MergeTreeBase | protected |
| clusterAsgn_ | ttk::MergeTreeAutoencoder | protected |
| clusteringLossTemp_ | ttk::MergeTreeAutoencoder | protected |
| clusteringLossWeight_ | ttk::MergeTreeAutoencoder | protected |
| CompactTriangulationCacheSize | ttkAlgorithm | protected |
| computeBranchDecomposition(ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged) | ttk::MergeTreeBase | inlineprotected |
| computeBranchesCorrelationMatrix(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< double > > &allTs, std::vector< std::vector< double > > &branchesCorrelationMatrix, std::vector< std::vector< double > > &persCorrelationMatrix) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeDistance(dataType x1, dataType x2, dataType y1, dataType y2, double power=2) | ttk::MergeTreeBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, unsigned int barycenterMaximumNumberOfPairs, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneDistance(ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneDistance(ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| ComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation) | ttkAlgorithm | |
| convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching) | ttk::MergeTreeBase | inlineprotected |
| convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching) | ttk::MergeTreeBase | inlineprotected |
| convertToDiagram_ | ttk::MergeTreeBase | protected |
| copyMinMaxPair(ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false) | ttk::MergeTreeBase | inlineprotected |
| createOutput_ | ttk::MergeTreeAutoencoder | protected |
| customAlphas_ | ttk::MergeTreeAutoencoder | protected |
| customLossActivate_ | ttk::MergeTreeAutoencoder | protected |
| customLossDynamicWeight_ | ttk::MergeTreeAutoencoder | protected |
| customLossSpace_ | ttk::MergeTreeAutoencoder | protected |
| customMatchings_ | ttk::MergeTreeAutoencoder | protected |
| dataMatchings_ | ttk::MergeTreeAutoencoder | protected |
| Debug() | ttk::Debug | |
| debugLevel_ | ttk::Debug | mutableprotected |
| debugMsgNamePrefix_ | ttk::Debug | protected |
| debugMsgPrefix_ | ttk::Debug | protected |
| deleteCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId) | ttk::MergeTreeBase | inlineprotected |
| deleteMultiPersPairs(ftm::FTMTree_MT *tree, bool useBD) | ttk::MergeTreeBase | inlineprotected |
| deleteMultiPersPairs_ | ttk::MergeTreeBase | protected |
| deterministic_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| distanceMatrix_ | ttk::MergeTreeAutoencoder | protected |
| distanceSquaredRoot_ | ttk::MergeTreeBase | protected |
| doCompute_ | ttk::MergeTreeAutoencoder | protected |
| dontUseMinMaxPair(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| encoderNoLayers_ | ttk::MergeTreeAutoencoder | protected |
| epsilon1UseFarthestSaddle_ | ttk::MergeTreeBase | protected |
| epsilon2Tree1_ | ttk::MergeTreeBase | protected |
| epsilon2Tree2_ | ttk::MergeTreeBase | protected |
| epsilon3Tree1_ | ttk::MergeTreeBase | protected |
| epsilon3Tree2_ | ttk::MergeTreeBase | protected |
| epsilonTree1_ | ttk::MergeTreeBase | protected |
| epsilonTree2_ | ttk::MergeTreeBase | protected |
| euclideanVectorsInit_ | ttk::MergeTreeAutoencoder | protected |
| execute(std::vector< ftm::MergeTree< float > > &trees, std::vector< ftm::MergeTree< float > > &trees2) | ttk::MergeTreeAutoencoder | protected |
| FillInputPortInformation(int port, vtkInformation *info) override | ttkMergeTreeAutoencoder | protected |
| ttkAlgorithm::FillInputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
| FillOutputPortInformation(int port, vtkInformation *info) override | ttkMergeTreeAutoencoder | protected |
| ttkAlgorithm::FillOutputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
| fixMergedRootOrigin(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| fullSymmetricAE_ | ttk::MergeTreeAutoencoder | protected |
| GenerateGlobalIds(vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId) | ttkAlgorithm | protected |
| GetActivate() | ttkMergeTreeAutoencoder | inline |
| GetActivateOutputInit() | ttkMergeTreeAutoencoder | inline |
| GetActivationFunction() | ttkMergeTreeAutoencoder | inline |
| GetBarycenterSizeLimitPercent() | ttkMergeTreeAutoencoder | inline |
| GetBatchSize() | ttkMergeTreeAutoencoder | inline |
| GetBeta1() | ttkMergeTreeAutoencoder | inline |
| GetBeta2() | ttkMergeTreeAutoencoder | inline |
| GetClassName() | ttkMergeTreeAutoencoder | virtual |
| GetClusteringLossTemperature() | ttkMergeTreeAutoencoder | inline |
| GetClusteringLossWeight() | ttkMergeTreeAutoencoder | inline |
| GetCreateOutput() | ttkMergeTreeAutoencoder | inline |
| GetCustomLossActivate() | ttkMergeTreeAutoencoder | inline |
| GetCustomLossDynamicWeight() | ttkMergeTreeAutoencoder | inline |
| GetCustomLossSpace() | ttkMergeTreeAutoencoder | inline |
| GetDeleteMultiPersPairs() | ttkMergeTreeAutoencoder | inline |
| GetDeterministic() | ttkMergeTreeAutoencoder | inline |
| GetDoCompute() | ttkMergeTreeAutoencoder | inline |
| GetEpsilon1UseFarthestSaddle() | ttkMergeTreeAutoencoder | inline |
| GetEpsilon2Tree1() | ttkMergeTreeAutoencoder | inline |
| GetEpsilon3Tree1() | ttkMergeTreeAutoencoder | inline |
| GetEpsilonTree1() | ttkMergeTreeAutoencoder | inline |
| GetEuclideanVectorsInit() | ttkMergeTreeAutoencoder | inline |
| GetFullSymmetricAE() | ttkMergeTreeAutoencoder | inline |
| GetGradientStepSize() | ttkMergeTreeAutoencoder | inline |
| GetIdentifierArrayPtr(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true) | ttkAlgorithm | |
| GetInitOriginPrimeStructByCopy() | ttkMergeTreeAutoencoder | inline |
| GetInputNumberOfAxes() | ttkMergeTreeAutoencoder | inline |
| GetInputOriginPrimeSizePercent() | ttkMergeTreeAutoencoder | inline |
| getInverseMatchingVector(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| GetIterationGap() | ttkMergeTreeAutoencoder | inline |
| GetJoinSplitMixtureCoefficient() | ttkMergeTreeAutoencoder | inline |
| GetLatentSpaceOriginPrimeSizePercent() | ttkMergeTreeAutoencoder | inline |
| getMatchingMatrix(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< ftm::idNode > > &matchingMatrix) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| getMatchingVector(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| GetMaxIteration() | ttkMergeTreeAutoencoder | inline |
| GetMetricLossWeight() | ttkMergeTreeAutoencoder | inline |
| GetMinIteration() | ttkMergeTreeAutoencoder | inline |
| GetNodePerTask() | ttkMergeTreeAutoencoder | inline |
| GetNormalizedWasserstein() | ttkMergeTreeAutoencoder | inline |
| GetNormalizeMetricLoss() | ttkMergeTreeAutoencoder | inline |
| GetNumberOfAxes() | ttkMergeTreeAutoencoder | inline |
| GetNumberOfEncoderLayers() | ttkMergeTreeAutoencoder | inline |
| GetNumberOfInit() | ttkMergeTreeAutoencoder | inline |
| GetNumberOfProjectionSteps() | ttkMergeTreeAutoencoder | inline |
| GetOptimizer() | ttkMergeTreeAutoencoder | inline |
| GetOptionalArray(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0) | ttkAlgorithm | |
| GetOrderArray(vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false) | ttkAlgorithm | |
| GetOrderArrayName(vtkDataArray *const array) | ttkAlgorithm | static |
| GetOutput() | ttkAlgorithm | |
| GetOutput(int) | ttkAlgorithm | |
| getParametrizedBirthDeath(ftm::FTMTree_MT *tree, ftm::idNode node) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| getParamNames(std::vector< std::string > ¶mNames) | ttk::MergeTreeBase | inlineprotected |
| getParamValueFromName(std::string ¶mName) | ttk::MergeTreeBase | inlineprotected |
| GetPersistenceThreshold() | ttkMergeTreeAutoencoder | inline |
| GetReconstructionLossWeight() | ttkMergeTreeAutoencoder | inline |
| GetScaleLayerAfterLatent() | ttkMergeTreeAutoencoder | inline |
| getSizeLimitMetric(std::vector< ftm::FTMTree_MT * > &trees) | ttk::MergeTreeBase | inlineprotected |
| getThreadNumber() const | ttk::BaseClass | inline |
| GetTrackingLossDecoding() | ttkMergeTreeAutoencoder | inline |
| GetTrackingLossInitRandomness() | ttkMergeTreeAutoencoder | inline |
| GetTrackingLossWeight() | ttkMergeTreeAutoencoder | inline |
| getTreesNodeCorr() | ttk::MergeTreeBase | inlineprotected |
| getTreesStats(std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats) | ttk::MergeTreeBase | inlineprotected |
| GetTriangulation(vtkDataSet *dataSet) | ttkAlgorithm | |
| gradientStepSize_ | ttk::MergeTreeAutoencoder | protected |
| hasComputedOnce_ | ttk::MergeTreeAutoencoder | protected |
| identifyRealMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching) | ttk::MergeTreeBase | inlineprotected |
| initOriginPrimeStructByCopy_ | ttk::MergeTreeAutoencoder | protected |
| initRandomVector(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| initVectorFromMatching(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, std::vector< std::vector< double > > &v) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| initVectors(int axeNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &v1, std::vector< std::vector< double > > &v2, std::vector< std::vector< double > > &trees2V1, std::vector< std::vector< double > > &trees2V2, int newVectorOffset, std::vector< double > &inputToOriginDistances, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings2, std::vector< std::vector< double > > &inputToAxesDistances, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, bool projectInitializedVectors, F initializedVectorsProjection) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| inputNumberOfAxes_ | ttk::MergeTreeAutoencoder | protected |
| inputOriginPrimeSizePercent_ | ttk::MergeTreeAutoencoder | protected |
| inputToBaryDistances_L0_ | ttk::MergeTreeAutoencoder | protected |
| insertCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId) | ttk::MergeTreeBase | inlineprotected |
| IsA(const char *type) | ttkMergeTreeAutoencoder | virtual |
| isPersistenceDiagram_ | ttk::MergeTreeBase | protected |
| IsTypeOf(const char *type) | ttkMergeTreeAutoencoder | static |
| iterationGap_ | ttk::MergeTreeAutoencoder | protected |
| k_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| keepMostImportantPairs(ftm::FTMTree_MT *tree, int n, bool useBD) | ttk::MergeTreeBase | inlineprotected |
| keepSubtree_ | ttk::MergeTreeBase | protected |
| lastLineMode | ttk::Debug | protectedstatic |
| lastObject_ | ttk::BaseClass | protected |
| latentSpaceOriginPrimeSizePercent_ | ttk::MergeTreeAutoencoder | protected |
| maxIteration_ | ttk::MergeTreeAutoencoder | protected |
| mergeSaddle(ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false) | ttk::MergeTreeBase | inlineprotected |
| MergeTreeAutoencoder() | ttk::MergeTreeAutoencoder | protected |
| MergeTreeAxesAlgorithmBase() | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| MergeTreeBase() | ttk::MergeTreeBase | inlineprotected |
| metricLossWeight_ | ttk::MergeTreeAutoencoder | protected |
| minIteration_ | ttk::MergeTreeAutoencoder | protected |
| mixDistances(dataType distance1, dataType distance2) | ttk::MergeTreeBase | inlineprotected |
| mixDistancesMatrix(std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2) | ttk::MergeTreeBase | inlineprotected |
| mixDistancesMinMaxPairWeight(bool isFirstInput) | ttk::MergeTreeBase | inlineprotected |
| mixDistancesWeight(bool isFirstInput) | ttk::MergeTreeBase | inlineprotected |
| mixtureCoefficient_ | ttk::MergeTreeBase | protected |
| MPIGhostPipelinePreconditioning(vtkDataSet *input) | ttkAlgorithm | protected |
| MPIPipelinePreconditioning(vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr) | ttkAlgorithm | protected |
| MPITriangulationPreconditioning(ttk::Triangulation *triangulation, vtkDataSet *input) | ttkAlgorithm | protected |
| mtFlattening(ftm::MergeTree< dataType > &mt) | ttk::MergeTreeBase | inlineprotected |
| mtsFlattening(std::vector< ftm::MergeTree< dataType > > &mts) | ttk::MergeTreeBase | inlineprotected |
| New() | ttkMergeTreeAutoencoder | static |
| nodePerTask_ | ttk::MergeTreeBase | protected |
| noInit_ | ttk::MergeTreeAutoencoder | protected |
| noLayers_ | ttk::MergeTreeAutoencoder | protected |
| nonMatchingWeight_ | ttk::MergeTreeBase | protected |
| normalizedWasserstein_ | ttk::MergeTreeBase | protected |
| normalizeMetricLoss_ | ttk::MergeTreeAutoencoder | protected |
| numberOfAxes_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| optimizer_ | ttk::MergeTreeAutoencoder | protected |
| origins2NoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| origins2PrimeNoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| originsMatchings_ | ttk::MergeTreeAutoencoder | protected |
| originsNoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| originsPrimeNoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| outputInit_ | ttk::MergeTreeAutoencoder | protected |
| parallelize_ | ttk::MergeTreeBase | protected |
| persCorrelationMatrix_ | ttk::MergeTreeAutoencoder | protected |
| persistenceMerging(ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100) | ttk::MergeTreeBase | inlineprotected |
| persistenceThreshold_ | ttk::MergeTreeBase | protected |
| persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes) | ttk::MergeTreeBase | inlineprotected |
| persistenceThresholding(ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes) | ttk::MergeTreeBase | inlineprotected |
| persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT) | ttk::MergeTreeBase | inlineprotected |
| persistenceThresholding(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| postprocessingPipeline(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inlineprotected |
| preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inlineprotected |
| preprocessingTrees(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< int > > &nodeCorr, bool useMinMaxPairT=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| preprocessingTrees(std::vector< ftm::MergeTree< dataType > > &trees, bool useMinMaxPairT=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| preprocessTree(ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inlineprotected |
| printErr(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| printMatching(std::vector< MatchingType > &matchings) | ttk::MergeTreeBase | inlineprotected |
| printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings) | ttk::MergeTreeBase | inlineprotected |
| printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings) | ttk::MergeTreeBase | inlineprotected |
| printMsg(const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsgInternal(const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| printMsgInternal(const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| printOutputMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true) | ttk::MergeTreeBase | inlineprotected |
| printPairs(std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs) | ttk::MergeTreeBase | inlineprotected |
| printTable(dataType *table, int nRows, int nCols) | ttk::MergeTreeBase | inlineprotected |
| printTableVector(std::vector< std::vector< dataType > > &table) | ttk::MergeTreeBase | inlineprotected |
| printTreesStats(std::vector< ftm::FTMTree_MT * > &trees) | ttk::MergeTreeBase | inlineprotected |
| printTreesStats(std::vector< ftm::MergeTree< dataType > > &trees) | ttk::MergeTreeBase | inlineprotected |
| printWrn(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| ProcessRequest(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override | ttkAlgorithm | |
| putBackMergedNodes(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| reconstMatchings_ | ttk::MergeTreeAutoencoder | protected |
| reconstructionLossWeight_ | ttk::MergeTreeAutoencoder | protected |
| relabelCost(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2) | ttk::MergeTreeBase | inlineprotected |
| relabelCostOnly(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2) | ttk::MergeTreeBase | inlineprotected |
| RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override | ttkMergeTreeAutoencoder | protected |
| ttkAlgorithm::RequestData(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestDataNotGenerated(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestDataObject(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) | ttkAlgorithm | protectedvirtual |
| RequestInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateExtent(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateTime(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateTimeDependentInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| reverseMatchingVector(unsigned int noNodes, std::vector< ftm::idNode > &matchingVector, std::vector< ftm::idNode > &invMatchingVector) | ttk::MergeTreeAxesAlgorithmBase | protected |
| reverseMatchingVector(ftm::MergeTree< dataType > &tree, std::vector< ftm::idNode > &matchingVector, std::vector< ftm::idNode > &invMatchingVector) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| reverseNodeCorr(ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr) | ttk::MergeTreeBase | inlineprotected |
| run(vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2) | ttkMergeTreeAutoencoder | protected |
| runCompute(vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2) | ttkMergeTreeAutoencoder | protected |
| runOutput(vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2) | ttkMergeTreeAutoencoder | protected |
| SafeDownCast(vtkObject *o) | ttkMergeTreeAutoencoder | static |
| SAME_DATA_TYPE_AS_INPUT_PORT() | ttkAlgorithm | static |
| scaleLayerAfterLatent_ | ttk::MergeTreeAutoencoder | protected |
| SetActivate(bool activate) | ttkMergeTreeAutoencoder | inline |
| SetActivateOutputInit(bool activateOutputInit) | ttkMergeTreeAutoencoder | inline |
| SetActivationFunction(unsigned int activationFunction) | ttkMergeTreeAutoencoder | inline |
| setAssignmentSolver(int assignmentSolver) | ttk::MergeTreeBase | inlineprotected |
| setBarycenterMergeTree(bool imt) | ttk::MergeTreeBase | inlineprotected |
| SetBarycenterSizeLimitPercent(double percent) | ttkMergeTreeAutoencoder | inline |
| SetBatchSize(double bs) | ttkMergeTreeAutoencoder | inline |
| SetBeta1(double beta) | ttkMergeTreeAutoencoder | inline |
| SetBeta2(double beta) | ttkMergeTreeAutoencoder | inline |
| setBranchDecomposition(bool useBD) | ttk::MergeTreeBase | inlineprotected |
| setCleanTree(bool clean) | ttk::MergeTreeBase | inlineprotected |
| SetClusteringLossTemperature(double clusteringLossTemperature) | ttkMergeTreeAutoencoder | inline |
| SetClusteringLossWeight(double clusteringLossWeight) | ttkMergeTreeAutoencoder | inline |
| SetCompactTriangulationCacheSize(float cacheSize) | ttkAlgorithm | inline |
| SetCreateOutput(bool createOutput) | ttkMergeTreeAutoencoder | inline |
| SetCustomLossActivate(bool customLossActivate) | ttkMergeTreeAutoencoder | inline |
| SetCustomLossDynamicWeight(bool customLossDynamicWeight) | ttkMergeTreeAutoencoder | inline |
| SetCustomLossSpace(bool customLossSpace) | ttkMergeTreeAutoencoder | inline |
| SetDebugLevel(int debugLevel) | ttkAlgorithm | inline |
| setDebugLevel(const int &debugLevel) | ttk::Debug | virtual |
| setDebugMsgPrefix(const std::string &prefix) | ttk::Debug | inline |
| SetDeleteMultiPersPairs(bool delMultiPersPairs) | ttkMergeTreeAutoencoder | inline |
| setDeleteMultiPersPairs(bool deleteMultiPersPairsT) | ttk::MergeTreeBase | inlineprotected |
| SetDeterministic(bool deterministic) | ttkMergeTreeAutoencoder | inline |
| setDistanceSquaredRoot(bool distanceSquaredRoot) | ttk::MergeTreeBase | inlineprotected |
| SetDoCompute(bool doCompute) | ttkMergeTreeAutoencoder | inline |
| SetEpsilon1UseFarthestSaddle(bool epsilon1UseFarthestSaddle) | ttkMergeTreeAutoencoder | inline |
| setEpsilon1UseFarthestSaddle(bool b) | ttk::MergeTreeBase | inlineprotected |
| setEpsilon2Tree1(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| SetEpsilon2Tree1(double epsilon2Tree1) | ttkMergeTreeAutoencoder | inline |
| setEpsilon2Tree2(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| setEpsilon3Tree1(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| SetEpsilon3Tree1(double epsilon3Tree1) | ttkMergeTreeAutoencoder | inline |
| setEpsilon3Tree2(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| setEpsilonTree1(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| SetEpsilonTree1(double epsilonTree1) | ttkMergeTreeAutoencoder | inline |
| setEpsilonTree2(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| SetEuclideanVectorsInit(bool euclideanVectorsInit) | ttkMergeTreeAutoencoder | inline |
| SetFullSymmetricAE(bool fullSymmetricAE) | ttkMergeTreeAutoencoder | inline |
| SetGradientStepSize(double lr) | ttkMergeTreeAutoencoder | inline |
| SetInitOriginPrimeStructByCopy(bool initOriginPrimeStructByCopy) | ttkMergeTreeAutoencoder | inline |
| SetInputArrayToProcess(const char *name) | ttkMergeTreeAutoencoder | inline |
| SetInputData(vtkDataSet *) | ttkAlgorithm | |
| SetInputData(int, vtkDataSet *) | ttkAlgorithm | |
| SetInputNumberOfAxes(unsigned int numberOfAxes) | ttkMergeTreeAutoencoder | inline |
| SetInputOriginPrimeSizePercent(double originSize) | ttkMergeTreeAutoencoder | inline |
| setIsPersistenceDiagram(bool isPD) | ttk::MergeTreeBase | inlineprotected |
| SetIterationGap(unsigned int iterationGap) | ttkMergeTreeAutoencoder | inline |
| SetJoinSplitMixtureCoefficient(double joinSplitMixtureCoefficient) | ttkMergeTreeAutoencoder | inline |
| setKeepSubtree(bool keepSubtree) | ttk::MergeTreeBase | inlineprotected |
| SetLatentSpaceOriginPrimeSizePercent(double originSize) | ttkMergeTreeAutoencoder | inline |
| SetMaxIteration(unsigned int maxIteration) | ttkMergeTreeAutoencoder | inline |
| SetMetricLossWeight(double metricLossWeight) | ttkMergeTreeAutoencoder | inline |
| SetMinIteration(unsigned int minIteration) | ttkMergeTreeAutoencoder | inline |
| SetNodePerTask(int nodePerTask) | ttkMergeTreeAutoencoder | inline |
| setNodePerTask(int npt) | ttk::MergeTreeBase | inlineprotected |
| setNonMatchingWeight(double weight) | ttk::MergeTreeBase | inlineprotected |
| SetNormalizedWasserstein(bool nW) | ttkMergeTreeAutoencoder | inline |
| setNormalizedWasserstein(bool normalizedWasserstein) | ttk::MergeTreeBase | inlineprotected |
| SetNormalizeMetricLoss(bool normalizeMetricLoss) | ttkMergeTreeAutoencoder | inline |
| SetNumberOfAxes(unsigned int numberOfAxes) | ttkMergeTreeAutoencoder | inline |
| SetNumberOfEncoderLayers(unsigned int numberOfEncoderLayers) | ttkMergeTreeAutoencoder | inline |
| SetNumberOfInit(unsigned int noInit) | ttkMergeTreeAutoencoder | inline |
| SetNumberOfProjectionSteps(unsigned int noSteps) | ttkMergeTreeAutoencoder | inline |
| SetOptimizer(int optimizer) | ttkMergeTreeAutoencoder | inline |
| setParallelize(bool para) | ttk::MergeTreeBase | inlineprotected |
| setParamValueFromName(std::string ¶mName, double value) | ttk::MergeTreeBase | inlineprotected |
| setPersistenceThreshold(double pt) | ttk::MergeTreeBase | inlineprotected |
| SetPersistenceThreshold(double persistenceThreshold) | ttkMergeTreeAutoencoder | inline |
| SetReconstructionLossWeight(double reconstructionLossWeight) | ttkMergeTreeAutoencoder | inline |
| SetScaleLayerAfterLatent(unsigned int scaleLayerAfterLatent) | ttkMergeTreeAutoencoder | inline |
| setThreadNumber(const int threadNumber) | ttk::BaseClass | inlinevirtual |
| SetThreadNumber(int threadNumber) | ttkAlgorithm | inline |
| SetTrackingLossDecoding(double trackingLossDecoding) | ttkMergeTreeAutoencoder | inline |
| SetTrackingLossInitRandomness(double trackingLossInitRandomness) | ttkMergeTreeAutoencoder | inline |
| SetTrackingLossWeight(double trackingLossWeight) | ttkMergeTreeAutoencoder | inline |
| SetUseAllCores(bool useAllCores) | ttkAlgorithm | inline |
| setUseMinMaxPair(bool useMinMaxPair) | ttk::MergeTreeBase | inlineprotected |
| setWrapper(const Wrapper *wrapper) override | ttk::Debug | virtual |
| Superclass typedef | ttkMergeTreeAutoencoder | |
| t_allVectorCopy_time_ | ttk::MergeTreeAutoencoder | protected |
| threadNumber_ | ttk::BaseClass | mutableprotected |
| trackingLossDecoding_ | ttk::MergeTreeAutoencoder | protected |
| trackingLossInitRandomness_ | ttk::MergeTreeAutoencoder | protected |
| trackingLossWeight_ | ttk::MergeTreeAutoencoder | protected |
| trees2NodeCorr_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| treesNodeCorr_ | ttk::MergeTreeBase | protected |
| ttkAlgorithm() | ttkAlgorithm | protected |
| ttkMergeTreeAutoencoder() | ttkMergeTreeAutoencoder | protected |
| UpdateThreadNumber() | ttkAlgorithm | inline |
| useDoubleInput_ | ttk::MergeTreeBase | protected |
| useFullMerge_ | ttk::MergeTreeBase | protected |
| useMinMaxPair_ | ttk::MergeTreeBase | protected |
| verifyOrigins(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| verifyPairsTree(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| vS2NoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| vS2PrimeNoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| vSNoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| vSPrimeNoZeroGrad_ | ttk::MergeTreeAutoencoder | protected |
| wassersteinPower_ | ttk::MergeTreeBase | protected |
| welcomeMsg(std::ostream &stream) | ttk::Debug | protected |
| wrapper_ | ttk::BaseClass | protected |
| ~BaseClass()=default | ttk::BaseClass | virtual |
| ~Debug() override | ttk::Debug | |
| ~ttkAlgorithm() override | ttkAlgorithm | protected |
1.9.8