#include <MergeTreeAxesAlgorithmBase.h>

Inheritance diagram for ttk::MergeTreeAxesAlgorithmBase:

Public Member Functions
	MergeTreeAxesAlgorithmBase ()

template<class dataType >
void	computeOneDistance (ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true)

template<class dataType >
void	computeOneDistance (ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true)

template<class dataType >
void	initVectorFromMatching (ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, std::vector< std::vector< double > > &v)

template<class dataType >
void	initRandomVector (ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s)

template<class dataType , typename F >
int	initVectors (int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &v1, std::vector< std::vector< double > > &v2, std::vector< std::vector< double > > &trees2V1, std::vector< std::vector< double > > &trees2V2, int newVectorOffset, std::vector< double > &inputToOriginDistances, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings2, std::vector< std::vector< double > > &inputToGeodesicsDistances, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, bool projectInitializedVectors, F initializedVectorsProjection)

template<class dataType >
void	computeOneBarycenter (std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, unsigned int barycenterMaximumNumberOfPairs, bool useDoubleInput=false, bool isFirstInput=true)

template<class dataType >
void	computeOneBarycenter (std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, bool useDoubleInput=false, bool isFirstInput=true)

template<class dataType >
void	computeOneBarycenter (std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, bool useDoubleInput=false, bool isFirstInput=true)

template<class dataType >
void	computeOneBarycenter (std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings)

template<class dataType >
void	computeOneBarycenter (std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree)

template<class dataType >
void	preprocessingTrees (std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< int > > &nodeCorr, bool useMinMaxPairT=true)

template<class dataType >
void	preprocessingTrees (std::vector< ftm::MergeTree< dataType > > &trees, bool useMinMaxPairT=true)

template<class dataType >
void	getMatchingVector (ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector)

template<class dataType >
void	getInverseMatchingVector (ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector)

template<class dataType >
void	getMatchingMatrix (ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< ftm::idNode > > &matchingMatrix)

template<class dataType >
std::tuple< dataType, dataType >	getParametrizedBirthDeath (ftm::FTMTree_MT *tree, ftm::idNode node)

template<class dataType >
void	computeBranchesCorrelationMatrix (ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< double > > &allTs, std::vector< std::vector< double > > &branchesCorrelationMatrix, std::vector< std::vector< double > > &persCorrelationMatrix)

void	zeroPadding (std::string &colName, const size_t numberCols, const size_t colIdx)

std::string	getTableCoefficientName (int noGeodesics, int geodesicNum)

std::string	getTableCoefficientNormName (int noGeodesics, int geodesicNum)

std::string	getTableVectorName (int noGeodesics, int geodesicNum, int vId, int vComp, bool isSecondInput=false)

std::string	getTableCorrelationName (int noGeodesics, int geodesicNum)

std::string	getTableCorrelationPersName (int noGeodesics, int geodesicNum)

std::string	getTableCorrelationTreeName (int noTrees, int treeNum)

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

virtual int	setWrapper (const Wrapper *wrapper)

Public Member Functions inherited from ttk::MergeTreeBase
	MergeTreeBase ()

void	setAssignmentSolver (int assignmentSolver)

void	setEpsilon1UseFarthestSaddle (bool b)

void	setEpsilonTree1 (double epsilon)

void	setEpsilonTree2 (double epsilon)

void	setEpsilon2Tree1 (double epsilon)

void	setEpsilon2Tree2 (double epsilon)

void	setEpsilon3Tree1 (double epsilon)

void	setEpsilon3Tree2 (double epsilon)

void	setPersistenceThreshold (double pt)

void	setParallelize (bool para)

void	setNodePerTask (int npt)

void	setBranchDecomposition (bool useBD)

void	setNormalizedWasserstein (bool normalizedWasserstein)

void	setKeepSubtree (bool keepSubtree)

void	setBarycenterMergeTree (bool imt)

void	setDistanceSquaredRoot (bool distanceSquaredRoot)

void	setUseMinMaxPair (bool useMinMaxPair)

void	setDeleteMultiPersPairs (bool deleteMultiPersPairsT)

void	setCleanTree (bool clean)

void	setIsPersistenceDiagram (bool isPD)

std::vector< std::vector< int > >	getTreesNodeCorr ()

double	mixDistancesMinMaxPairWeight (bool isFirstInput)

double	mixDistancesWeight (bool isFirstInput)

template<class dataType >
double	mixDistances (dataType distance1, dataType distance2)

template<class dataType >
void	mixDistancesMatrix (std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)

template<class dataType >
void	mergeSaddle (ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)

template<class dataType >
void	persistenceMerging (ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)

template<class dataType >
void	keepMostImportantPairs (ftm::FTMTree_MT *tree, int n, bool useBD)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree)

template<class dataType >
void	verifyOrigins (ftm::FTMTree_MT *tree)

template<class dataType >
void	preprocessTree (ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)

template<class dataType >
ftm::FTMTree_MT *	computeBranchDecomposition (ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)

template<class dataType >
void	dontUseMinMaxPair (ftm::FTMTree_MT *tree)

void	verifyPairsTree (ftm::FTMTree_MT *tree)

template<class dataType >
void	deleteMultiPersPairs (ftm::FTMTree_MT *tree, bool useBD)

template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)

template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)

void	reverseNodeCorr (ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)

template<class dataType >
void	mtFlattening (ftm::MergeTree< dataType > &mt)

template<class dataType >
void	mtsFlattening (std::vector< ftm::MergeTree< dataType > > &mts)

double	getSizeLimitMetric (std::vector< ftm::FTMTree_MT * > &trees)

template<class dataType >
void	copyMinMaxPair (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)

template<class dataType >
std::tuple< int, dataType >	fixMergedRootOrigin (ftm::FTMTree_MT *tree)

template<class dataType >
void	branchDecompositionToTree (ftm::FTMTree_MT *tree)

template<class dataType >
void	putBackMergedNodes (ftm::FTMTree_MT *tree)

template<class dataType >
void	postprocessingPipeline (ftm::FTMTree_MT *tree)

template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)

template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)

template<class dataType >
void	identifyRealMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)

template<class dataType >
dataType	computeDistance (dataType x1, dataType x2, dataType y1, dataType y2, double power=2)

template<class dataType >
dataType	deleteCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)

template<class dataType >
dataType	insertCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)

template<class dataType >
dataType	relabelCostOnly (ftm::FTMTree_MT tree1, ftm::idNode nodeId1, ftm::FTMTree_MT tree2, ftm::idNode nodeId2)

template<class dataType >
dataType	relabelCost (ftm::FTMTree_MT tree1, ftm::idNode nodeId1, ftm::FTMTree_MT tree2, ftm::idNode nodeId2)

void	getParamNames (std::vector< std::string > &paramNames)

double	getParamValueFromName (std::string &paramName)

void	setParamValueFromName (std::string &paramName, double value)

void	getTreesStats (std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)

void	printTreesStats (std::vector< ftm::FTMTree_MT * > &trees)

template<class dataType >
void	printTreesStats (std::vector< ftm::MergeTree< dataType > > &trees)

template<class dataType >
void	printTableVector (std::vector< std::vector< dataType > > &table)

template<class dataType >
void	printTable (dataType *table, int nRows, int nCols)

void	printMatching (std::vector< MatchingType > &matchings)

void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)

void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)

template<class dataType >
void	printPairs (std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)

template<class dataType >
void	printOutputMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, bool computeCosts=true)

Protected Attributes
bool	deterministic_ = true

unsigned int	numberOfGeodesics_ = 1

unsigned int	k_ = 10

double	barycenterSizeLimitPercent_ = 0.0

std::vector< std::vector< int > >	trees2NodeCorr_

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Protected Attributes inherited from ttk::MergeTreeBase
int	assignmentSolverID_ = 0

bool	epsilon1UseFarthestSaddle_ = false

double	epsilonTree1_ = 0

double	epsilonTree2_ = 0

double	epsilon2Tree1_ = 100

double	epsilon2Tree2_ = 100

double	epsilon3Tree1_ = 100

double	epsilon3Tree2_ = 100

double	persistenceThreshold_ = 0

bool	barycenterMergeTree_ = false

bool	useMinMaxPair_ = true

bool	deleteMultiPersPairs_ = false

bool	branchDecomposition_ = true

int	wassersteinPower_ = 2

bool	normalizedWasserstein_ = true

bool	keepSubtree_ = false

bool	distanceSquaredRoot_ = true

bool	useFullMerge_ = false

bool	isPersistenceDiagram_ = false

bool	convertToDiagram_ = false

double	mixtureCoefficient_ = 0.5

bool	useDoubleInput_ = false

bool	parallelize_ = true

int	nodePerTask_ = 32

bool	cleanTree_ = true

std::vector< std::vector< int > >	treesNodeCorr_

Additional Inherited Members
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

Author: Mathieu Pont mathi.nosp@m.eu.p.nosp@m.ont@l.nosp@m.ip6..nosp@m.fr

Date: 2023

Related publication:
"Principal Geodesic Analysis of Merge Trees (and Persistence Diagrams)"
Mathieu Pont, Jules Vidal, Julien Tierny.
IEEE Transactions on Visualization and Computer Graphics, 2022

Definition at line 24 of file MergeTreeAxesAlgorithmBase.h.

Constructor & Destructor Documentation

◆ MergeTreeAxesAlgorithmBase()

ttk::MergeTreeAxesAlgorithmBase::MergeTreeAxesAlgorithmBase ( )

inline

Definition at line 37 of file MergeTreeAxesAlgorithmBase.h.

Member Function Documentation

◆ computeBranchesCorrelationMatrix()

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeBranchesCorrelationMatrix	(	ftm::MergeTree< dataType > &	barycenter,
		std::vector< ftm::MergeTree< dataType > > &	trees,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	baryMatchings,
		std::vector< std::vector< double > > &	allTs,
		std::vector< std::vector< double > > &	branchesCorrelationMatrix,
		std::vector< std::vector< double > > &	persCorrelationMatrix
	)

inline

Definition at line 488 of file MergeTreeAxesAlgorithmBase.h.

◆ computeOneBarycenter() [1/5]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeOneBarycenter	(	std::vector< ftm::MergeTree< dataType > > &	trees,
		ftm::MergeTree< dataType > &	baryMergeTree
	)

inline

Definition at line 380 of file MergeTreeAxesAlgorithmBase.h.

◆ computeOneBarycenter() [2/5]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeOneBarycenter	(	std::vector< ftm::MergeTree< dataType > > &	trees,
		ftm::MergeTree< dataType > &	baryMergeTree,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	matchings
	)

inline

Definition at line 369 of file MergeTreeAxesAlgorithmBase.h.

◆ computeOneBarycenter() [3/5]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeOneBarycenter	(	std::vector< ftm::MergeTree< dataType > > &	trees,
		ftm::MergeTree< dataType > &	baryMergeTree,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	matchings,
		std::vector< double > &	finalDistances,
		bool	useDoubleInput = `false`,
		bool	isFirstInput = `true`
	)

inline

Definition at line 355 of file MergeTreeAxesAlgorithmBase.h.

◆ computeOneBarycenter() [4/5]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeOneBarycenter	(	std::vector< ftm::MergeTree< dataType > > &	trees,
		ftm::MergeTree< dataType > &	baryMergeTree,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	matchings,
		std::vector< double > &	finalDistances,
		double	barycenterSizeLimitPercent,
		bool	useDoubleInput = `false`,
		bool	isFirstInput = `true`
	)

inline

Definition at line 338 of file MergeTreeAxesAlgorithmBase.h.

◆ computeOneBarycenter() [5/5]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeOneBarycenter	(	std::vector< ftm::MergeTree< dataType > > &	trees,
		ftm::MergeTree< dataType > &	baryMergeTree,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	matchings,
		std::vector< double > &	finalDistances,
		double	barycenterSizeLimitPercent,
		unsigned int	barycenterMaximumNumberOfPairs,
		bool	useDoubleInput = `false`,
		bool	isFirstInput = `true`
	)

inline

Definition at line 307 of file MergeTreeAxesAlgorithmBase.h.

◆ computeOneDistance() [1/2]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeOneDistance	(	ftm::MergeTree< dataType > &	tree1,
		ftm::MergeTree< dataType > &	tree2,
		dataType &	distance,
		bool	isCalled = `false`,
		bool	useDoubleInput = `false`,
		bool	isFirstInput = `true`
	)

inline

Definition at line 77 of file MergeTreeAxesAlgorithmBase.h.

◆ computeOneDistance() [2/2]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::computeOneDistance	(	ftm::MergeTree< dataType > &	tree1,
		ftm::MergeTree< dataType > &	tree2,
		std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &	matching,
		dataType &	distance,
		bool	isCalled = `false`,
		bool	useDoubleInput = `false`,
		bool	isFirstInput = `true`
	)

inline

Definition at line 48 of file MergeTreeAxesAlgorithmBase.h.

◆ getInverseMatchingVector()

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::getInverseMatchingVector	(	ftm::MergeTree< dataType > &	barycenter,
		ftm::MergeTree< dataType > &	tree,
		std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &	matchings,
		std::vector< ftm::idNode > &	matchingVector
	)

inline

Definition at line 440 of file MergeTreeAxesAlgorithmBase.h.

◆ getMatchingMatrix()

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::getMatchingMatrix	(	ftm::MergeTree< dataType > &	barycenter,
		std::vector< ftm::MergeTree< dataType > > &	trees,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	matchings,
		std::vector< std::vector< ftm::idNode > > &	matchingMatrix
	)

inline

Definition at line 457 of file MergeTreeAxesAlgorithmBase.h.

◆ getMatchingVector()

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::getMatchingVector	(	ftm::MergeTree< dataType > &	barycenter,
		ftm::MergeTree< dataType > &	tree,
		std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &	matchings,
		std::vector< ftm::idNode > &	matchingVector
	)

inline

Definition at line 421 of file MergeTreeAxesAlgorithmBase.h.

◆ getParametrizedBirthDeath()

template<class dataType >

std::tuple< dataType, dataType > ttk::MergeTreeAxesAlgorithmBase::getParametrizedBirthDeath	(	ftm::FTMTree_MT *	tree,
		ftm::idNode	node
	)

inline

Definition at line 479 of file MergeTreeAxesAlgorithmBase.h.

◆ getTableCoefficientName()

std::string ttk::MergeTreeAxesAlgorithmBase::getTableCoefficientName	(	int	noGeodesics,
		int	geodesicNum
	)

inline

Definition at line 573 of file MergeTreeAxesAlgorithmBase.h.

◆ getTableCoefficientNormName()

std::string ttk::MergeTreeAxesAlgorithmBase::getTableCoefficientNormName	(	int	noGeodesics,
		int	geodesicNum
	)

inline

Definition at line 579 of file MergeTreeAxesAlgorithmBase.h.

◆ getTableCorrelationName()

std::string ttk::MergeTreeAxesAlgorithmBase::getTableCorrelationName	(	int	noGeodesics,
		int	geodesicNum
	)

inline

Definition at line 598 of file MergeTreeAxesAlgorithmBase.h.

◆ getTableCorrelationPersName()

std::string ttk::MergeTreeAxesAlgorithmBase::getTableCorrelationPersName	(	int	noGeodesics,
		int	geodesicNum
	)

inline

Definition at line 604 of file MergeTreeAxesAlgorithmBase.h.

◆ getTableCorrelationTreeName()

std::string ttk::MergeTreeAxesAlgorithmBase::getTableCorrelationTreeName	(	int	noTrees,
		int	treeNum
	)

inline

Definition at line 610 of file MergeTreeAxesAlgorithmBase.h.

◆ getTableVectorName()

std::string ttk::MergeTreeAxesAlgorithmBase::getTableVectorName	(	int	noGeodesics,
		int	geodesicNum,
		int	vId,
		int	vComp,
		bool	isSecondInput = `false`
	)

inline

Definition at line 585 of file MergeTreeAxesAlgorithmBase.h.

◆ initRandomVector()

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::initRandomVector	(	ftm::MergeTree< dataType > &	barycenter,
		std::vector< std::vector< double > > &	v,
		std::vector< std::vector< std::vector< double > > > &	vS,
		std::vector< std::vector< std::vector< double > > > &	v2s
	)

inline

Definition at line 124 of file MergeTreeAxesAlgorithmBase.h.

◆ initVectorFromMatching()

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::initVectorFromMatching	(	ftm::MergeTree< dataType > &	barycenter,
		ftm::MergeTree< dataType > &	tree,
		std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &	matching,
		std::vector< std::vector< double > > &	v
	)

inline

Definition at line 92 of file MergeTreeAxesAlgorithmBase.h.

◆ initVectors()

template<class dataType , typename F >

int ttk::MergeTreeAxesAlgorithmBase::initVectors	(	int	geodesicNumber,
		ftm::MergeTree< dataType > &	barycenter,
		std::vector< ftm::MergeTree< dataType > > &	trees,
		ftm::MergeTree< dataType > &	barycenter2,
		std::vector< ftm::MergeTree< dataType > > &	trees2,
		std::vector< std::vector< double > > &	v1,
		std::vector< std::vector< double > > &	v2,
		std::vector< std::vector< double > > &	trees2V1,
		std::vector< std::vector< double > > &	trees2V2,
		int	newVectorOffset,
		std::vector< double > &	inputToOriginDistances,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	baryMatchings,
		std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &	baryMatchings2,
		std::vector< std::vector< double > > &	inputToGeodesicsDistances,
		std::vector< std::vector< std::vector< double > > > &	vS,
		std::vector< std::vector< std::vector< double > > > &	v2s,
		std::vector< std::vector< std::vector< double > > > &	trees2Vs,
		std::vector< std::vector< std::vector< double > > > &	trees2V2s,
		bool	projectInitializedVectors,
		F	initializedVectorsProjection
	)

inline

Definition at line 155 of file MergeTreeAxesAlgorithmBase.h.

◆ preprocessingTrees() [1/2]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::preprocessingTrees	(	std::vector< ftm::MergeTree< dataType > > &	trees,
		bool	useMinMaxPairT = `true`
	)

inline

Definition at line 410 of file MergeTreeAxesAlgorithmBase.h.

◆ preprocessingTrees() [2/2]

template<class dataType >

void ttk::MergeTreeAxesAlgorithmBase::preprocessingTrees	(	std::vector< ftm::MergeTree< dataType > > &	trees,
		std::vector< std::vector< int > > &	nodeCorr,
		bool	useMinMaxPairT = `true`
	)

inline

Definition at line 391 of file MergeTreeAxesAlgorithmBase.h.

◆ zeroPadding()

void ttk::MergeTreeAxesAlgorithmBase::zeroPadding	(	std::string &	colName,
		const size_t	numberCols,
		const size_t	colIdx
	)

inline

Definition at line 564 of file MergeTreeAxesAlgorithmBase.h.

Member Data Documentation

◆ barycenterSizeLimitPercent_

double ttk::MergeTreeAxesAlgorithmBase::barycenterSizeLimitPercent_ = 0.0

protected

Definition at line 31 of file MergeTreeAxesAlgorithmBase.h.

◆ deterministic_

bool ttk::MergeTreeAxesAlgorithmBase::deterministic_ = true

protected

Definition at line 28 of file MergeTreeAxesAlgorithmBase.h.

◆ k_

unsigned int ttk::MergeTreeAxesAlgorithmBase::k_ = 10

protected

Definition at line 30 of file MergeTreeAxesAlgorithmBase.h.

◆ numberOfGeodesics_

unsigned int ttk::MergeTreeAxesAlgorithmBase::numberOfGeodesics_ = 1

protected

Definition at line 29 of file MergeTreeAxesAlgorithmBase.h.

◆ trees2NodeCorr_

std::vector<std::vector<int> > ttk::MergeTreeAxesAlgorithmBase::trees2NodeCorr_

protected

Definition at line 34 of file MergeTreeAxesAlgorithmBase.h.

The documentation for this class was generated from the following file:

/home/julien/Pro/git/github/ttk-tierny/core/base/mergeTreePrincipalGeodesics/MergeTreeAxesAlgorithmBase.h

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MergeTreeAxesAlgorithmBase()

Member Function Documentation

◆ computeBranchesCorrelationMatrix()

◆ computeOneBarycenter() [1/5]

◆ computeOneBarycenter() [2/5]

◆ computeOneBarycenter() [3/5]

◆ computeOneBarycenter() [4/5]

◆ computeOneBarycenter() [5/5]

◆ computeOneDistance() [1/2]

◆ computeOneDistance() [2/2]

◆ getInverseMatchingVector()

◆ getMatchingMatrix()

◆ getMatchingVector()

◆ getParametrizedBirthDeath()

◆ getTableCoefficientName()

◆ getTableCoefficientNormName()

◆ getTableCorrelationName()

◆ getTableCorrelationPersName()

◆ getTableCorrelationTreeName()

◆ getTableVectorName()

◆ initRandomVector()

◆ initVectorFromMatching()

◆ initVectors()

◆ preprocessingTrees() [1/2]

◆ preprocessingTrees() [2/2]

◆ zeroPadding()

Member Data Documentation

◆ barycenterSizeLimitPercent_

◆ deterministic_

◆ k_

◆ numberOfGeodesics_

◆ trees2NodeCorr_