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TTK
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This is the complete list of members for ttkMergeTreePrincipalGeodesicsDecoding, including all inherited members.
| AddInputData(vtkDataSet *) | ttkAlgorithm | |
| AddInputData(int, vtkDataSet *) | ttkAlgorithm | |
| adjustDiagonalT(dataType baryBirth, dataType baryDeath, ftm::idNode node, std::vector< std::vector< double > > &vNew, std::vector< std::vector< double > > &v2New, double &tMin, double &tMax) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| adjustNestingT(ftm::MergeTree< dataType > &ttkNotUsed(barycenter), dataType baryBirth, dataType baryDeath, ftm::idNode node, std::vector< std::vector< double > > &vNew, std::vector< std::vector< double > > &v2New, double &tMin, double &tMax) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| allScaledTs_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| allTreesTs_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| allTs_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| assignmentSolverID_ | ttk::MergeTreeBase | protected |
| barycenterMergeTree_ | ttk::MergeTreeBase | protected |
| barycenterSizeLimitPercent_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| baryMatchings2_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| baryMatchings_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| BaseClass() | ttk::BaseClass | |
| branchDecomposition_ | ttk::MergeTreeBase | protected |
| branchDecompositionToTree(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| branchesCorrelationMatrix_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| callGramSchmidt(std::vector< std::vector< double > > &vS, std::vector< double > &v, std::vector< double > &newV) | ttk::MergeTreePrincipalGeodesicsBase | protected |
| checkEmptyMPIInput(inputType *input) | ttkAlgorithm | inline |
| checkForGlobalAndComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx) | ttkAlgorithm | |
| checkGlobalIdValidity(ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray) | ttkAlgorithm | protected |
| cleanTree_ | ttk::MergeTreeBase | protected |
| CompactTriangulationCacheSize | ttkAlgorithm | protected |
| computeBranchDecomposition(ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged) | ttk::MergeTreeBase | inlineprotected |
| computeBranchesCorrelationMatrix(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< double > > &allTs, std::vector< std::vector< double > > &branchesCorrelationMatrix, std::vector< std::vector< double > > &persCorrelationMatrix) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeDistance(dataType x1, dataType x2, dataType y1, dataType y2, double power=2) | ttk::MergeTreeBase | inlineprotected |
| computeGeodesicsDistance(std::vector< ttk::ftm::MergeTree< dataType > > &barycenters) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, unsigned int barycenterMaximumNumberOfPairs, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneDistance(ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| computeOneDistance(ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| ComputeOrderArray(vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation) | ttkAlgorithm | |
| computeReconstructionError(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &inputTrees, std::vector< std::vector< double * > > &vS, std::vector< std::vector< double * > > &v2s, size_t vSize, std::vector< std::vector< double > > &allTreesTs, std::vector< double > &reconstructionErrors, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, bool transposeVector=true) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| computeReconstructionError(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &inputTrees, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &allTreesTs, std::vector< double > &reconstructionErrors) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| computeReconstructionError(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &inputTrees, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &allTreesTs) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| computeReconstructionError_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| constructGeodesicsEllipses(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &geodesicsEllipses, bool isSecondInput=false) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| constructGeodesicsRectangle(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &geodesicsRectangle, unsigned int rectangleMultiplier=1, bool isSecondInput=false) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| constructGeodesicsSurface(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &geodesicsSurface, bool isSecondInput=false) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| constructGeodesicsTrees(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< ftm::MergeTree< dataType > > > &geodesicsTrees, bool isSecondInput=false) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching) | ttk::MergeTreeBase | inlineprotected |
| convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching) | ttk::MergeTreeBase | inlineprotected |
| convertToDiagram_ | ttk::MergeTreeBase | protected |
| copyMinMaxPair(ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false) | ttk::MergeTreeBase | inlineprotected |
| Debug() | ttk::Debug | |
| debugLevel_ | ttk::Debug | mutableprotected |
| debugMsgNamePrefix_ | ttk::Debug | protected |
| debugMsgPrefix_ | ttk::Debug | protected |
| deleteCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId) | ttk::MergeTreeBase | inlineprotected |
| deleteMultiPersPairs(ftm::FTMTree_MT *tree, bool useBD) | ttk::MergeTreeBase | inlineprotected |
| deleteMultiPersPairs_ | ttk::MergeTreeBase | protected |
| deterministic_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| distanceSquaredRoot_ | ttk::MergeTreeBase | protected |
| dontUseMinMaxPair(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| epsilon1UseFarthestSaddle_ | ttk::MergeTreeBase | protected |
| epsilon2Tree1_ | ttk::MergeTreeBase | protected |
| epsilon2Tree2_ | ttk::MergeTreeBase | protected |
| epsilon3Tree1_ | ttk::MergeTreeBase | protected |
| epsilon3Tree2_ | ttk::MergeTreeBase | protected |
| epsilonTree1_ | ttk::MergeTreeBase | protected |
| epsilonTree2_ | ttk::MergeTreeBase | protected |
| FillInputPortInformation(int port, vtkInformation *info) override | ttkMergeTreePrincipalGeodesicsDecoding | protected |
| ttkAlgorithm::FillInputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
| FillOutputPortInformation(int port, vtkInformation *info) override | ttkMergeTreePrincipalGeodesicsDecoding | protected |
| ttkAlgorithm::FillOutputPortInformation(int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override | ttkAlgorithm | inlineprotected |
| fixMergedRootOrigin(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| GenerateGlobalIds(vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId) | ttkAlgorithm | protected |
| geodesicsDistances_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| getAdjustedTMax(double tMin, double m) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| getAdjustedTMin(double tMax, double m) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| GetClassName() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetcomputeReconstructionError_() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetConstructEllipses() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetConstructGeodesicsTrees() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetConstructRectangle() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetConstructSurface() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| getGeodesicsMiddle(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double * > > &vS, std::vector< std::vector< double * > > &v2s, size_t vSize, std::array< double, 2 > &middle) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| getGeodesicVectorMiddle(std::vector< double > &v, std::vector< double > &v2) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| GetIdentifierArrayPtr(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true) | ttkAlgorithm | |
| getInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< double * > &v, std::vector< double * > &v2, size_t vSize, double t, ftm::MergeTree< dataType > &interpolated, bool transposeVector=true) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| getInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, double t, ftm::MergeTree< dataType > &interpolated) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| getInterpolationVector(ftm::MergeTree< dataType > &barycenter, std::vector< double * > &v, std::vector< double * > &v2, size_t vSize, double t, std::vector< dataType > &interpolationVectorT, bool transposeVector) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| getInterpolationVectorDebugMsg(dataType birth, dataType death, std::vector< std::vector< double > > &vNew, std::vector< std::vector< double > > &v2New, int i, double t, double tMin, double tMax, const std::string &msg, std::stringstream &ssT) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| getInverseMatchingVector(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| getMatchingMatrix(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< ftm::idNode > > &matchingMatrix) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| getMatchingVector(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| getMultiInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double * > > &vS, std::vector< std::vector< double * > > &v2s, size_t vSize, std::vector< double > &ts, ftm::MergeTree< dataType > &interpolated, bool transposeVector=true) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| getMultiInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< double > &ts, ftm::MergeTree< dataType > &interpolated) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| getMultiInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< double > &ts, double t, ftm::MergeTree< dataType > &interpolated) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| GetNumberOfGeodesicsIntervals() | ttkMergeTreePrincipalGeodesicsDecoding | inline |
| getNumberOfRectangles(unsigned int rectangleMultiplier=1) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| GetOptionalArray(const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0) | ttkAlgorithm | |
| GetOrderArray(vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false) | ttkAlgorithm | |
| GetOrderArrayName(vtkDataArray *const array) | ttkAlgorithm | static |
| GetOutput() | ttkAlgorithm | |
| GetOutput(int) | ttkAlgorithm | |
| GetOutputBarycenter() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetOutputInputTrees() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetOutputInputTreesSegmentation() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| getParametrizedBirthDeath(ftm::FTMTree_MT *tree, ftm::idNode node) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| getParamNames(std::vector< std::string > ¶mNames) | ttk::MergeTreeBase | inlineprotected |
| getParamValueFromName(std::string ¶mName) | ttk::MergeTreeBase | inlineprotected |
| GetProcessSecondInput() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetReconstructInputTrees() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GetRectangleMultiplier() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| getSizeLimitMetric(std::vector< ftm::FTMTree_MT * > &trees) | ttk::MergeTreeBase | inlineprotected |
| getThreadNumber() const | ttk::BaseClass | inline |
| getTNew(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, int i, double t) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| GettransferBarycenterInformation_() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| GettransferInputTreesInformation_() | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| getTreesNodeCorr() | ttk::MergeTreeBase | inlineprotected |
| getTreesStats(std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats) | ttk::MergeTreeBase | inlineprotected |
| GetTriangulation(vtkDataSet *dataSet) | ttkAlgorithm | |
| identifyRealMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching) | ttk::MergeTreeBase | inlineprotected |
| initRandomVector(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| initVectorFromMatching(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, std::vector< std::vector< double > > &v) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| initVectors(int axeNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &v1, std::vector< std::vector< double > > &v2, std::vector< std::vector< double > > &trees2V1, std::vector< std::vector< double > > &trees2V2, int newVectorOffset, std::vector< double > &inputToOriginDistances, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings2, std::vector< std::vector< double > > &inputToAxesDistances, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, bool projectInitializedVectors, F initializedVectorsProjection) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| insertCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId) | ttk::MergeTreeBase | inlineprotected |
| IsA(const char *type) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| isPersistenceDiagram_ | ttk::MergeTreeBase | protected |
| IsTypeOf(const char *type) | ttkMergeTreePrincipalGeodesicsDecoding | static |
| k_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| keepMostImportantPairs(ftm::FTMTree_MT *tree, int n, bool useBD) | ttk::MergeTreeBase | inlineprotected |
| keepSubtree_ | ttk::MergeTreeBase | protected |
| lastLineMode | ttk::Debug | protectedstatic |
| lastObject_ | ttk::BaseClass | protected |
| mergeSaddle(ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false) | ttk::MergeTreeBase | inlineprotected |
| MergeTreeAxesAlgorithmBase() | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| MergeTreeBase() | ttk::MergeTreeBase | inlineprotected |
| MergeTreePrincipalGeodesicsBase() | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| MergeTreePrincipalGeodesicsDecoding() | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| mixDistances(dataType distance1, dataType distance2) | ttk::MergeTreeBase | inlineprotected |
| mixDistancesMatrix(std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2) | ttk::MergeTreeBase | inlineprotected |
| mixDistancesMinMaxPairWeight(bool isFirstInput) | ttk::MergeTreeBase | inlineprotected |
| mixDistancesWeight(bool isFirstInput) | ttk::MergeTreeBase | inlineprotected |
| mixtureCoefficient_ | ttk::MergeTreeBase | protected |
| MPIGhostPipelinePreconditioning(vtkDataSet *input) | ttkAlgorithm | protected |
| MPIPipelinePreconditioning(vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr) | ttkAlgorithm | protected |
| MPITriangulationPreconditioning(ttk::Triangulation *triangulation, vtkDataSet *input) | ttkAlgorithm | protected |
| mtFlattening(ftm::MergeTree< dataType > &mt) | ttk::MergeTreeBase | inlineprotected |
| mtsFlattening(std::vector< ftm::MergeTree< dataType > > &mts) | ttk::MergeTreeBase | inlineprotected |
| New() | ttkMergeTreePrincipalGeodesicsDecoding | static |
| nodePerTask_ | ttk::MergeTreeBase | protected |
| nonMatchingWeight_ | ttk::MergeTreeBase | protected |
| normalizedWasserstein_ | ttk::MergeTreeBase | protected |
| numberOfAxes_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| parallelize_ | ttk::MergeTreeBase | protected |
| pBranchesCorrelationMatrix_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| persCorrelationMatrix_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| persistenceMerging(ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100) | ttk::MergeTreeBase | inlineprotected |
| persistenceThreshold_ | ttk::MergeTreeBase | protected |
| persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes) | ttk::MergeTreeBase | inlineprotected |
| persistenceThresholding(ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes) | ttk::MergeTreeBase | inlineprotected |
| persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT) | ttk::MergeTreeBase | inlineprotected |
| persistenceThresholding(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| pointersToVectors(std::vector< double * > &pVec, std::vector< size_t > sizes, std::vector< std::vector< double > > &vec) | ttk::MergeTreePrincipalGeodesicsBase | protected |
| pointersToVectors(std::vector< double * > &pVec, size_t size, std::vector< std::vector< double > > &vec) | ttk::MergeTreePrincipalGeodesicsBase | protected |
| pointerToVector(double *pVec, size_t size, std::vector< double > &vec) | ttk::MergeTreePrincipalGeodesicsBase | protected |
| postprocessingPipeline(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| pPersCorrelationMatrix_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| preprocessBarycenter(ftm::MergeTree< dataType > &barycenter) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inlineprotected |
| preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inlineprotected |
| preprocessingTrees(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< int > > &nodeCorr, bool useMinMaxPairT=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| preprocessingTrees(std::vector< ftm::MergeTree< dataType > > &trees, bool useMinMaxPairT=true) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| preprocessTree(ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true) | ttk::MergeTreeBase | inlineprotected |
| printErr(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| printMatching(std::vector< MatchingType > &matchings) | ttk::MergeTreeBase | inlineprotected |
| printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings) | ttk::MergeTreeBase | inlineprotected |
| printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings) | ttk::MergeTreeBase | inlineprotected |
| printMsg(const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsg(const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const | ttk::Debug | inline |
| printMsgInternal(const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| printMsgInternal(const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const | ttk::Debug | inlineprotected |
| printOutputMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true) | ttk::MergeTreeBase | inlineprotected |
| printPairs(std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs) | ttk::MergeTreeBase | inlineprotected |
| printTable(dataType *table, int nRows, int nCols) | ttk::MergeTreeBase | inlineprotected |
| printTableVector(std::vector< std::vector< dataType > > &table) | ttk::MergeTreeBase | inlineprotected |
| printTreesStats(std::vector< ftm::FTMTree_MT * > &trees) | ttk::MergeTreeBase | inlineprotected |
| printTreesStats(std::vector< ftm::MergeTree< dataType > > &trees) | ttk::MergeTreeBase | inlineprotected |
| printWrn(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const | ttk::Debug | inline |
| processInputTrees(std::vector< ttk::ftm::MergeTree< dataType > > &inputTrees) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| ProcessRequest(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override | ttkAlgorithm | |
| pTrees2V2s_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| pTrees2Vs_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| putBackMergedNodes(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| pV2s_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| pVS_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| reconstruction(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &inputTrees, std::vector< ftm::MergeTree< dataType > > &reconstructedTrees, std::vector< double > &reconstructionErrors, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &recInputMatchings, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &recBaryMatchings, bool isSecondInput=false) | ttk::MergeTreePrincipalGeodesicsDecoding | inlineprotected |
| relabelCost(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2) | ttk::MergeTreeBase | inlineprotected |
| relabelCostOnly(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2) | ttk::MergeTreeBase | inlineprotected |
| RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override | ttkMergeTreePrincipalGeodesicsDecoding | protected |
| ttkAlgorithm::RequestData(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestDataNotGenerated(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestDataObject(vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) | ttkAlgorithm | protectedvirtual |
| RequestInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateExtent(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateTime(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| RequestUpdateTimeDependentInformation(vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector)) | ttkAlgorithm | inlineprotectedvirtual |
| reverseMatchingVector(unsigned int noNodes, std::vector< ftm::idNode > &matchingVector, std::vector< ftm::idNode > &invMatchingVector) | ttk::MergeTreeAxesAlgorithmBase | protected |
| reverseMatchingVector(ftm::MergeTree< dataType > &tree, std::vector< ftm::idNode > &matchingVector, std::vector< ftm::idNode > &invMatchingVector) | ttk::MergeTreeAxesAlgorithmBase | inlineprotected |
| reverseNodeCorr(ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr) | ttk::MergeTreeBase | inlineprotected |
| run(vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputBary, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees) | ttkMergeTreePrincipalGeodesicsDecoding | protected |
| runCompute(vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputBary, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees) | ttkMergeTreePrincipalGeodesicsDecoding | protected |
| runCompute(vtkInformationVector *ttkNotUsed(outputVector), std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputBary, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees) | ttkMergeTreePrincipalGeodesicsDecoding | |
| runOutput(vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputBary, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees) | ttkMergeTreePrincipalGeodesicsDecoding | protected |
| runOutput(vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &ttkNotUsed(inputBary), std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees) | ttkMergeTreePrincipalGeodesicsDecoding | |
| SafeDownCast(vtkObject *o) | ttkMergeTreePrincipalGeodesicsDecoding | static |
| SAME_DATA_TYPE_AS_INPUT_PORT() | ttkAlgorithm | static |
| setAssignmentSolver(int assignmentSolver) | ttk::MergeTreeBase | inlineprotected |
| setBarycenterMergeTree(bool imt) | ttk::MergeTreeBase | inlineprotected |
| setBranchDecomposition(bool useBD) | ttk::MergeTreeBase | inlineprotected |
| setCleanTree(bool clean) | ttk::MergeTreeBase | inlineprotected |
| SetCompactTriangulationCacheSize(float cacheSize) | ttkAlgorithm | inline |
| SetcomputeReconstructionError_(bool b) | ttkMergeTreePrincipalGeodesicsDecoding | inline |
| SetConstructEllipses(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| SetConstructGeodesicsTrees(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| SetConstructRectangle(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| SetConstructSurface(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| setDebugLevel(const int &debugLevel) | ttk::Debug | virtual |
| SetDebugLevel(int debugLevel) | ttkAlgorithm | inline |
| setDebugMsgPrefix(const std::string &prefix) | ttk::Debug | inline |
| setDeleteMultiPersPairs(bool deleteMultiPersPairsT) | ttk::MergeTreeBase | inlineprotected |
| setDistanceSquaredRoot(bool distanceSquaredRoot) | ttk::MergeTreeBase | inlineprotected |
| setEpsilon1UseFarthestSaddle(bool b) | ttk::MergeTreeBase | inlineprotected |
| setEpsilon2Tree1(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| setEpsilon2Tree2(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| setEpsilon3Tree1(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| setEpsilon3Tree2(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| setEpsilonTree1(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| setEpsilonTree2(double epsilon) | ttk::MergeTreeBase | inlineprotected |
| SetInputData(vtkDataSet *) | ttkAlgorithm | |
| SetInputData(int, vtkDataSet *) | ttkAlgorithm | |
| setIsPersistenceDiagram(bool isPD) | ttk::MergeTreeBase | inlineprotected |
| setKeepSubtree(bool keepSubtree) | ttk::MergeTreeBase | inlineprotected |
| setNodePerTask(int npt) | ttk::MergeTreeBase | inlineprotected |
| setNonMatchingWeight(double weight) | ttk::MergeTreeBase | inlineprotected |
| setNormalizedWasserstein(bool normalizedWasserstein) | ttk::MergeTreeBase | inlineprotected |
| SetNumberOfGeodesicsIntervals(int k) | ttkMergeTreePrincipalGeodesicsDecoding | inline |
| SetOutputBarycenter(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| SetOutputInputTrees(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| SetOutputInputTreesSegmentation(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| setParallelize(bool para) | ttk::MergeTreeBase | inlineprotected |
| setParamValueFromName(std::string ¶mName, double value) | ttk::MergeTreeBase | inlineprotected |
| setPersistenceThreshold(double pt) | ttk::MergeTreeBase | inlineprotected |
| SetProcessSecondInput(bool b) | ttkMergeTreePrincipalGeodesicsDecoding | inline |
| SetReconstructInputTrees(bool) | ttkMergeTreePrincipalGeodesicsDecoding | virtual |
| SetRectangleMultiplier(unsigned int mult) | ttkMergeTreePrincipalGeodesicsDecoding | inline |
| SetThreadNumber(int threadNumber) | ttkAlgorithm | inline |
| setThreadNumber(const int threadNumber) | ttk::BaseClass | inlinevirtual |
| SettransferBarycenterInformation_(bool b) | ttkMergeTreePrincipalGeodesicsDecoding | inline |
| SettransferInputTreesInformation_(bool b) | ttkMergeTreePrincipalGeodesicsDecoding | inline |
| SetUseAllCores(bool useAllCores) | ttkAlgorithm | inline |
| setUseMinMaxPair(bool useMinMaxPair) | ttk::MergeTreeBase | inlineprotected |
| setWrapper(const Wrapper *wrapper) override | ttk::Debug | virtual |
| Superclass typedef | ttkMergeTreePrincipalGeodesicsDecoding | |
| surfaceBoundaryID_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| surfaceIsBoundary_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| tEllipses_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| tGeodesics_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| threadNumber_ | ttk::BaseClass | mutableprotected |
| transferBarycenterInformation_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| transferInputTreesInformation_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| tRectangle_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| trees2NodeCorr_ | ttk::MergeTreeAxesAlgorithmBase | protected |
| trees2V2s_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| trees2Vs_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| treesNodeCorr_ | ttk::MergeTreeBase | protected |
| tSurface_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| ttkAlgorithm() | ttkAlgorithm | protected |
| ttkMergeTreePrincipalGeodesicsDecoding() | ttkMergeTreePrincipalGeodesicsDecoding | protected |
| updateT(double newT, double m, double &tMin, double &tMax, bool updateTMin) | ttk::MergeTreePrincipalGeodesicsBase | inlineprotected |
| UpdateThreadNumber() | ttkAlgorithm | inline |
| useDoubleInput_ | ttk::MergeTreeBase | protected |
| useFullMerge_ | ttk::MergeTreeBase | protected |
| useMinMaxPair_ | ttk::MergeTreeBase | protected |
| v2s_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| vectorOfVectorsToPointers(std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< double * > > &pVS) | ttk::MergeTreePrincipalGeodesicsBase | protected |
| vectorsToPointers(std::vector< std::vector< double > > &vec, std::vector< double * > &pVec) | ttk::MergeTreePrincipalGeodesicsBase | protected |
| vectorToPointer(std::vector< double > &vec, double *&pVec) | ttk::MergeTreePrincipalGeodesicsBase | protected |
| verifyOrigins(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| verifyPairsTree(ftm::FTMTree_MT *tree) | ttk::MergeTreeBase | inlineprotected |
| vS_ | ttk::MergeTreePrincipalGeodesicsBase | protected |
| vSize2_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| vSize_ | ttk::MergeTreePrincipalGeodesicsDecoding | protected |
| wassersteinPower_ | ttk::MergeTreeBase | protected |
| welcomeMsg(std::ostream &stream) | ttk::Debug | protected |
| wrapper_ | ttk::BaseClass | protected |
| ~BaseClass()=default | ttk::BaseClass | virtual |
| ~Debug() override | ttk::Debug | |
| ~ttkAlgorithm() override | ttkAlgorithm | protected |
1.9.8