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ttk::MergeTreePrincipalGeodesics Member List

This is the complete list of members for ttk::MergeTreePrincipalGeodesics, including all inherited members.

adjustDiagonalT(dataType baryBirth, dataType baryDeath, ftm::idNode node, std::vector< std::vector< double > > &vNew, std::vector< std::vector< double > > &v2New, double &tMin, double &tMax)ttk::MergeTreePrincipalGeodesicsBaseinline
adjustNestingT(ftm::MergeTree< dataType > &ttkNotUsed(barycenter), dataType baryBirth, dataType baryDeath, ftm::idNode node, std::vector< std::vector< double > > &vNew, std::vector< std::vector< double > > &v2New, double &tMin, double &tMax)ttk::MergeTreePrincipalGeodesicsBaseinline
allScaledTs_ttk::MergeTreePrincipalGeodesicsBaseprotected
allTreesTs_ttk::MergeTreePrincipalGeodesicsBaseprotected
allTs_ttk::MergeTreePrincipalGeodesicsBaseprotected
assignmentImpl(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2, std::vector< std::vector< double > > &allTreesTs, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings2, std::vector< double > &ts, std::vector< double > &distances)ttk::MergeTreePrincipalGeodesicsinline
assignmentSolverID_ttk::MergeTreeBaseprotected
assignmentStep(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2, std::vector< std::vector< double > > &allTreesTs, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings2, std::vector< double > &ts, std::vector< double > &distances)ttk::MergeTreePrincipalGeodesicsinline
barycenter_ttk::MergeTreePrincipalGeodesicsprotected
barycenterBDT_ttk::MergeTreePrincipalGeodesicsprotected
barycenterInput2_ttk::MergeTreePrincipalGeodesicsprotected
barycenterInput2BDT_ttk::MergeTreePrincipalGeodesicsprotected
barycenterMergeTree_ttk::MergeTreeBaseprotected
barycenterSizeLimitPercent_ttk::MergeTreeAxesAlgorithmBaseprotected
barycenterWasComputed_ttk::MergeTreePrincipalGeodesicsprotected
barycentricProjection(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &extremity, std::vector< std::vector< double > > &v, bool isV1, bool useDoubleInput=false, bool isFirstInput=true)ttk::MergeTreePrincipalGeodesicsinline
baryMatchings2_ttk::MergeTreePrincipalGeodesicsBaseprotected
baryMatchings_ttk::MergeTreePrincipalGeodesicsBaseprotected
BaseClass()ttk::BaseClass
branchDecomposition_ttk::MergeTreeBaseprotected
branchDecompositionToTree(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
branchesCorrelationMatrix_ttk::MergeTreePrincipalGeodesicsBaseprotected
callGramSchmidt(std::vector< std::vector< double > > &vS, std::vector< double > &v, std::vector< double > &newV)ttk::MergeTreePrincipalGeodesicsBase
cleanTree_ttk::MergeTreeBaseprotected
computeBranchDecomposition(ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)ttk::MergeTreeBaseinline
computeBranchesCorrelationMatrix(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees)ttk::MergeTreePrincipalGeodesicsinline
ttk::MergeTreePrincipalGeodesicsBase::computeBranchesCorrelationMatrix(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< double > > &allTs, std::vector< std::vector< double > > &branchesCorrelationMatrix, std::vector< std::vector< double > > &persCorrelationMatrix)ttk::MergeTreeAxesAlgorithmBaseinline
computeDistance(dataType x1, dataType x2, dataType y1, dataType y2, double power=2)ttk::MergeTreeBaseinline
computeExplainedVariance(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< double > &ts, bool computeGlobalVariance=false)ttk::MergeTreePrincipalGeodesics
computeExplainedVarianceT(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< double > &ts)ttk::MergeTreePrincipalGeodesics
computeExplainedVarianceT(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, ftm::MergeTree< dataType > &barycenter2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2, std::vector< double > &ts)ttk::MergeTreePrincipalGeodesics
computeGeodesicExtremities()ttk::MergeTreePrincipalGeodesicsinline
computeGlobalVariance(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees)ttk::MergeTreePrincipalGeodesics
computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, unsigned int barycenterMaximumNumberOfPairs, bool useDoubleInput=false, bool isFirstInput=true)ttk::MergeTreeAxesAlgorithmBaseinline
computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, double barycenterSizeLimitPercent, bool useDoubleInput=false, bool isFirstInput=true)ttk::MergeTreeAxesAlgorithmBaseinline
computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< double > &finalDistances, bool useDoubleInput=false, bool isFirstInput=true)ttk::MergeTreeAxesAlgorithmBaseinline
computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings)ttk::MergeTreeAxesAlgorithmBaseinline
computeOneBarycenter(std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &baryMergeTree)ttk::MergeTreeAxesAlgorithmBaseinline
computeOneDistance(ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true)ttk::MergeTreeAxesAlgorithmBaseinline
computeOneDistance(ftm::MergeTree< dataType > &tree1, ftm::MergeTree< dataType > &tree2, dataType &distance, bool isCalled=false, bool useDoubleInput=false, bool isFirstInput=true)ttk::MergeTreeAxesAlgorithmBaseinline
computePrincipalGeodesic(unsigned int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2)ttk::MergeTreePrincipalGeodesicsinline
computePrincipalGeodesics(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< ftm::MergeTree< dataType > > &trees2)ttk::MergeTreePrincipalGeodesicsinline
computeProjectionDistances(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< double > &ts, std::vector< double > &distances, bool useDoubleInput=false, bool isFirstInput=true)ttk::MergeTreePrincipalGeodesics
computeReconstructionError(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &inputTrees, std::vector< std::vector< double * > > &vS, std::vector< std::vector< double * > > &v2s, size_t vSize, std::vector< std::vector< double > > &allTreesTs, std::vector< double > &reconstructionErrors, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, bool transposeVector=true)ttk::MergeTreePrincipalGeodesicsBaseinline
computeReconstructionError(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &inputTrees, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &allTreesTs, std::vector< double > &reconstructionErrors)ttk::MergeTreePrincipalGeodesicsBaseinline
computeReconstructionError(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &inputTrees, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &allTreesTs)ttk::MergeTreePrincipalGeodesicsBaseinline
computeSurfaceExplainedVariance(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &ts)ttk::MergeTreePrincipalGeodesics
computeVarianceFromDistances(std::vector< dataType > &distances)ttk::MergeTreePrincipalGeodesics
convergenceStep(std::vector< double > &distances, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, dataType &oldFrechetEnergy, dataType &minFrechetEnergy, int &cptBlocked, bool &converged, double optMapCost)ttk::MergeTreePrincipalGeodesicsinline
convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)ttk::MergeTreeBaseinline
convertBranchDecompositionMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)ttk::MergeTreeBaseinline
convertToDiagram_ttk::MergeTreeBaseprotected
copyMinMaxPair(ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)ttk::MergeTreeBaseinline
copyMinMaxPairVector(std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2)ttk::MergeTreePrincipalGeodesicsinline
cumulTVariance_ttk::MergeTreePrincipalGeodesicsprotected
cumulVariance_ttk::MergeTreePrincipalGeodesicsprotected
Debug()ttk::Debug
debugLevel_ttk::Debugmutableprotected
debugMsgNamePrefix_ttk::Debugprotected
debugMsgPrefix_ttk::Debugprotected
deleteCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId)ttk::MergeTreeBaseinline
deleteMultiPersPairs(ftm::FTMTree_MT *tree, bool useBD)ttk::MergeTreeBaseinline
deleteMultiPersPairs_ttk::MergeTreeBaseprotected
deterministic_ttk::MergeTreeAxesAlgorithmBaseprotected
distanceSquaredRoot_ttk::MergeTreeBaseprotected
doComputeReconstructionError_ttk::MergeTreePrincipalGeodesicsprotected
dontUseMinMaxPair(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
epsilon1UseFarthestSaddle_ttk::MergeTreeBaseprotected
epsilon2Tree1_ttk::MergeTreeBaseprotected
epsilon2Tree2_ttk::MergeTreeBaseprotected
epsilon3Tree1_ttk::MergeTreeBaseprotected
epsilon3Tree2_ttk::MergeTreeBaseprotected
epsilonTree1_ttk::MergeTreeBaseprotected
epsilonTree2_ttk::MergeTreeBaseprotected
execute(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< ftm::MergeTree< dataType > > &trees2)ttk::MergeTreePrincipalGeodesicsinline
fixMergedRootOrigin(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
getAdjustedTMax(double tMin, double m)ttk::MergeTreePrincipalGeodesicsBaseinline
getAdjustedTMin(double tMax, double m)ttk::MergeTreePrincipalGeodesicsBaseinline
getGeodesicNumber()ttk::MergeTreePrincipalGeodesicsinline
getGeodesicVectorMiddle(std::vector< double > &v, std::vector< double > &v2)ttk::MergeTreePrincipalGeodesicsBaseinline
getInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< double * > &v, std::vector< double * > &v2, size_t vSize, double t, ftm::MergeTree< dataType > &interpolated, bool transposeVector=true)ttk::MergeTreePrincipalGeodesicsBaseinline
getInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, double t, ftm::MergeTree< dataType > &interpolated)ttk::MergeTreePrincipalGeodesicsBaseinline
getInterpolationVector(ftm::MergeTree< dataType > &barycenter, std::vector< double * > &v, std::vector< double * > &v2, size_t vSize, double t, std::vector< dataType > &interpolationVectorT, bool transposeVector)ttk::MergeTreePrincipalGeodesicsBaseinline
getInterpolationVectorDebugMsg(dataType birth, dataType death, std::vector< std::vector< double > > &vNew, std::vector< std::vector< double > > &v2New, int i, double t, double tMin, double tMax, const std::string &msg, std::stringstream &ssT)ttk::MergeTreePrincipalGeodesicsBaseinline
getInverseMatchingVector(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector)ttk::MergeTreeAxesAlgorithmBaseinline
getMatchingMatrix(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< ftm::idNode > > &matchingMatrix)ttk::MergeTreeAxesAlgorithmBaseinline
getMatchingVector(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings, std::vector< ftm::idNode > &matchingVector)ttk::MergeTreeAxesAlgorithmBaseinline
getMultiInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double * > > &vS, std::vector< std::vector< double * > > &v2s, size_t vSize, std::vector< double > &ts, ftm::MergeTree< dataType > &interpolated, bool transposeVector=true)ttk::MergeTreePrincipalGeodesicsBaseinline
getMultiInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< double > &ts, ftm::MergeTree< dataType > &interpolated)ttk::MergeTreePrincipalGeodesicsBaseinline
getMultiInterpolation(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< double > &ts, double t, ftm::MergeTree< dataType > &interpolated)ttk::MergeTreePrincipalGeodesicsBaseinline
getParametrizedBirthDeath(ftm::FTMTree_MT *tree, ftm::idNode node)ttk::MergeTreeAxesAlgorithmBaseinline
getParamNames(std::vector< std::string > &paramNames)ttk::MergeTreeBaseinline
getParamValueFromName(std::string &paramName)ttk::MergeTreeBaseinline
getSizeLimitMetric(std::vector< ftm::FTMTree_MT * > &trees)ttk::MergeTreeBaseinline
getThreadNumber() constttk::BaseClassinline
getTNew(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, int i, double t)ttk::MergeTreePrincipalGeodesicsBaseinline
getTreesNodeCorr()ttk::MergeTreeBaseinline
getTreesStats(std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)ttk::MergeTreeBaseinline
identifyRealMatching(ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)ttk::MergeTreeBaseinline
initRandomVector(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s)ttk::MergeTreeAxesAlgorithmBaseinline
initVectorFromMatching(ftm::MergeTree< dataType > &barycenter, ftm::MergeTree< dataType > &tree, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching, std::vector< std::vector< double > > &v)ttk::MergeTreeAxesAlgorithmBaseinline
initVectors(int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &v1, std::vector< std::vector< double > > &v2, std::vector< std::vector< double > > &trees2V1, std::vector< std::vector< double > > &trees2V2)ttk::MergeTreePrincipalGeodesicsinline
ttk::MergeTreePrincipalGeodesicsBase::initVectors(int axeNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &v1, std::vector< std::vector< double > > &v2, std::vector< std::vector< double > > &trees2V1, std::vector< std::vector< double > > &trees2V2, int newVectorOffset, std::vector< double > &inputToOriginDistances, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &baryMatchings2, std::vector< std::vector< double > > &inputToAxesDistances, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, bool projectInitializedVectors, F initializedVectorsProjection)ttk::MergeTreeAxesAlgorithmBaseinline
inputToBaryDistances_ttk::MergeTreePrincipalGeodesicsprotected
inputToGeodesicsDistances_ttk::MergeTreePrincipalGeodesicsprotected
insertCost(ftm::FTMTree_MT *tree, ftm::idNode nodeId)ttk::MergeTreeBaseinline
isPersistenceDiagram_ttk::MergeTreeBaseprotected
k_ttk::MergeTreeAxesAlgorithmBaseprotected
keepMostImportantPairs(ftm::FTMTree_MT *tree, int n, bool useBD)ttk::MergeTreeBaseinline
keepState_ttk::MergeTreePrincipalGeodesicsprotected
keepSubtree_ttk::MergeTreeBaseprotected
lastLineModettk::Debugprotectedstatic
lastObject_ttk::BaseClassprotected
manageIndividualTs(int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< double > &ts, std::vector< std::vector< double > > &allTreesTs, std::vector< ftm::MergeTree< dataType > > &allInterpolated, std::vector< bool > &isUniform, std::vector< std::vector< double > > &tss, unsigned int &noUniform, bool &foundAllUniform)ttk::MergeTreePrincipalGeodesicsinline
mergeSaddle(ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)ttk::MergeTreeBaseinline
MergeTreeAxesAlgorithmBase()ttk::MergeTreeAxesAlgorithmBaseinline
MergeTreeBase()ttk::MergeTreeBaseinline
MergeTreePrincipalGeodesics()ttk::MergeTreePrincipalGeodesicsinline
MergeTreePrincipalGeodesicsBase()ttk::MergeTreePrincipalGeodesicsBaseinline
mixDistances(dataType distance1, dataType distance2)ttk::MergeTreeBaseinline
mixDistancesMatrix(std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)ttk::MergeTreeBaseinline
mixDistancesMinMaxPairWeight(bool isFirstInput)ttk::MergeTreeBaseinline
mixDistancesWeight(bool isFirstInput)ttk::MergeTreeBaseinline
mixtureCoefficient_ttk::MergeTreeBaseprotected
mtFlattening(ftm::MergeTree< dataType > &mt)ttk::MergeTreeBaseinline
mtsFlattening(std::vector< ftm::MergeTree< dataType > > &mts)ttk::MergeTreeBaseinline
newVectorOffset_ttk::MergeTreePrincipalGeodesicsprotected
nodePerTask_ttk::MergeTreeBaseprotected
nonMatchingWeight_ttk::MergeTreeBaseprotected
noProjectionStep_ttk::MergeTreePrincipalGeodesicsprotected
normalizedWasserstein_ttk::MergeTreeBaseprotected
numberOfAxes_ttk::MergeTreeAxesAlgorithmBaseprotected
optimalMappingSetProjection(ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, ftm::MergeTree< dataType > &barycenter2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2, bool useSecondInput=false)ttk::MergeTreePrincipalGeodesicsinline
orthogonalCost(std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2)ttk::MergeTreePrincipalGeodesicsinline
orthogonalProjection(std::vector< std::vector< double > > &v1, std::vector< std::vector< double > > &v2, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s)ttk::MergeTreePrincipalGeodesicsinline
parallelize_ttk::MergeTreeBaseprotected
persCorrelationMatrix_ttk::MergeTreePrincipalGeodesicsBaseprotected
persistenceMerging(ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)ttk::MergeTreeBaseinline
persistenceThreshold_ttk::MergeTreeBaseprotected
persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)ttk::MergeTreeBaseinline
persistenceThresholding(ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)ttk::MergeTreeBaseinline
persistenceThresholding(ftm::FTMTree_MT *tree, double persistenceThresholdT)ttk::MergeTreeBaseinline
persistenceThresholding(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
pointersToVectors(std::vector< double * > &pVec, std::vector< size_t > sizes, std::vector< std::vector< double > > &vec)ttk::MergeTreePrincipalGeodesicsBase
pointersToVectors(std::vector< double * > &pVec, size_t size, std::vector< std::vector< double > > &vec)ttk::MergeTreePrincipalGeodesicsBase
pointerToVector(double *pVec, size_t size, std::vector< double > &vec)ttk::MergeTreePrincipalGeodesicsBase
postprocessingPipeline(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)ttk::MergeTreeBaseinline
preprocessingPipeline(ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)ttk::MergeTreeBaseinline
preprocessingTrees(std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< int > > &nodeCorr, bool useMinMaxPairT=true)ttk::MergeTreeAxesAlgorithmBaseinline
preprocessingTrees(std::vector< ftm::MergeTree< dataType > > &trees, bool useMinMaxPairT=true)ttk::MergeTreeAxesAlgorithmBaseinline
preprocessTree(ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)ttk::MergeTreeBaseinline
printErr(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) constttk::Debuginline
printIterationVariances(ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, int geodesicNumber, double globalVariance)ttk::MergeTreePrincipalGeodesicsinline
printMatching(std::vector< MatchingType > &matchings)ttk::MergeTreeBaseinline
printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)ttk::MergeTreeBaseinline
printMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)ttk::MergeTreeBaseinline
printMsg(const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginline
printMsg(const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) constttk::Debuginline
printMsgInternal(const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) constttk::Debuginlineprotected
printMsgInternal(const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) constttk::Debuginlineprotected
printOutputMatching(std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true)ttk::MergeTreeBaseinline
printPairs(std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)ttk::MergeTreeBaseinline
printTable(dataType *table, int nRows, int nCols)ttk::MergeTreeBaseinline
printTableVector(std::vector< std::vector< dataType > > &table)ttk::MergeTreeBaseinline
printTreesStats(std::vector< ftm::FTMTree_MT * > &trees)ttk::MergeTreeBaseinline
printTreesStats(std::vector< ftm::MergeTree< dataType > > &trees)ttk::MergeTreeBaseinline
printWrn(const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) constttk::Debuginline
projectInitializedVectors_ttk::MergeTreePrincipalGeodesicsprotected
projectionCost(std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, double optMapCost)ttk::MergeTreePrincipalGeodesicsinline
projectionStep(int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, ftm::MergeTree< dataType > &barycenter2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, bool useSecondInput, unsigned int noProjectionStep)ttk::MergeTreePrincipalGeodesicsinline
putBackMergedNodes(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
regularizerCost(std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2)ttk::MergeTreePrincipalGeodesicsinline
relabelCost(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)ttk::MergeTreeBaseinline
relabelCostOnly(ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)ttk::MergeTreeBaseinline
reverseMatchingVector(unsigned int noNodes, std::vector< ftm::idNode > &matchingVector, std::vector< ftm::idNode > &invMatchingVector)ttk::MergeTreeAxesAlgorithmBase
reverseMatchingVector(ftm::MergeTree< dataType > &tree, std::vector< ftm::idNode > &matchingVector, std::vector< ftm::idNode > &invMatchingVector)ttk::MergeTreeAxesAlgorithmBaseinline
reverseNodeCorr(ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)ttk::MergeTreeBaseinline
setAssignmentSolver(int assignmentSolver)ttk::MergeTreeBaseinline
setBarycenterMergeTree(bool imt)ttk::MergeTreeBaseinline
setBranchDecomposition(bool useBD)ttk::MergeTreeBaseinline
setCleanTree(bool clean)ttk::MergeTreeBaseinline
setDebugLevel(const int &debugLevel)ttk::Debugvirtual
setDebugMsgPrefix(const std::string &prefix)ttk::Debuginline
setDeleteMultiPersPairs(bool deleteMultiPersPairsT)ttk::MergeTreeBaseinline
setDistanceSquaredRoot(bool distanceSquaredRoot)ttk::MergeTreeBaseinline
setEpsilon1UseFarthestSaddle(bool b)ttk::MergeTreeBaseinline
setEpsilon2Tree1(double epsilon)ttk::MergeTreeBaseinline
setEpsilon2Tree2(double epsilon)ttk::MergeTreeBaseinline
setEpsilon3Tree1(double epsilon)ttk::MergeTreeBaseinline
setEpsilon3Tree2(double epsilon)ttk::MergeTreeBaseinline
setEpsilonTree1(double epsilon)ttk::MergeTreeBaseinline
setEpsilonTree2(double epsilon)ttk::MergeTreeBaseinline
setIsPersistenceDiagram(bool isPD)ttk::MergeTreeBaseinline
setKeepSubtree(bool keepSubtree)ttk::MergeTreeBaseinline
setNodePerTask(int npt)ttk::MergeTreeBaseinline
setNonMatchingWeight(double weight)ttk::MergeTreeBaseinline
setNormalizedWasserstein(bool normalizedWasserstein)ttk::MergeTreeBaseinline
setParallelize(bool para)ttk::MergeTreeBaseinline
setParamValueFromName(std::string &paramName, double value)ttk::MergeTreeBaseinline
setPersistenceThreshold(double pt)ttk::MergeTreeBaseinline
setThreadNumber(const int threadNumber)ttk::BaseClassinlinevirtual
setUseMinMaxPair(bool useMinMaxPair)ttk::MergeTreeBaseinline
setWrapper(const Wrapper *wrapper) overridettk::Debugvirtual
t_allVectorCopy_time_ttk::MergeTreePrincipalGeodesicsprotected
t_vectorCopy_time_ttk::MergeTreePrincipalGeodesicsprotected
threadNumber_ttk::BaseClassmutableprotected
trees2NodeCorr_ttk::MergeTreeAxesAlgorithmBaseprotected
trees2V2s_ttk::MergeTreePrincipalGeodesicsBaseprotected
trees2Vs_ttk::MergeTreePrincipalGeodesicsBaseprotected
treesNodeCorr_ttk::MergeTreeBaseprotected
trueGeneralizedGeodesicProjection(std::vector< std::vector< double > > &v1, std::vector< std::vector< double > > &v2)ttk::MergeTreePrincipalGeodesicsinline
updateClosedForm(int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< ftm::MergeTree< dataType > > &allInterpolated, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< double > > &tss, std::vector< std::vector< double > > &vR, std::vector< std::vector< double > > &vR2, std::vector< bool > &isUniform)ttk::MergeTreePrincipalGeodesicsinline
updateClosedFormStep(int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings2, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, std::vector< double > &ts, std::vector< std::vector< double > > &allTreesTs)ttk::MergeTreePrincipalGeodesicsinline
updateStep(int geodesicNumber, ftm::MergeTree< dataType > &barycenter, std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings, std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, ftm::MergeTree< dataType > &barycenter2, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &trees2V, std::vector< std::vector< double > > &trees2V2, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &matchings2, std::vector< std::vector< std::vector< double > > > &trees2Vs, std::vector< std::vector< std::vector< double > > > &trees2V2s, std::vector< double > &ts, std::vector< std::vector< double > > &allTreesTs)ttk::MergeTreePrincipalGeodesicsinline
updateT(double newT, double m, double &tMin, double &tMax, bool updateTMin)ttk::MergeTreePrincipalGeodesicsBaseinline
useDoubleInput_ttk::MergeTreeBaseprotected
useFullMerge_ttk::MergeTreeBaseprotected
useMinMaxPair_ttk::MergeTreeBaseprotected
v2s_ttk::MergeTreePrincipalGeodesicsBaseprotected
vectorOfVectorsToPointers(std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< double * > > &pVS)ttk::MergeTreePrincipalGeodesicsBase
vectorsToPointers(std::vector< std::vector< double > > &vec, std::vector< double * > &pVec)ttk::MergeTreePrincipalGeodesicsBase
vectorToPointer(std::vector< double > &vec, double *&pVec)ttk::MergeTreePrincipalGeodesicsBase
verifyMinMaxPair(ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree)ttk::MergeTreePrincipalGeodesicsinline
verifyOrigins(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
verifyOrthogonality(std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, bool doPrint=true)ttk::MergeTreePrincipalGeodesics
verifyOrthogonality(std::vector< std::vector< std::vector< double > > > &vS, std::vector< std::vector< std::vector< double > > > &v2s, std::vector< std::vector< double > > &v, std::vector< std::vector< double > > &v2, bool doPrint=true)ttk::MergeTreePrincipalGeodesics
verifyPairsTree(ftm::FTMTree_MT *tree)ttk::MergeTreeBaseinline
vS_ttk::MergeTreePrincipalGeodesicsBaseprotected
wassersteinPower_ttk::MergeTreeBaseprotected
welcomeMsg(std::ostream &stream)ttk::Debugprotected
wrapper_ttk::BaseClassprotected
~BaseClass()=defaultttk::BaseClassvirtual
~Debug() overridettk::Debug
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