ScalarFieldSmoother.h

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#pragma once
 
// base code includes
#include <Triangulation.h>
 
namespace ttk {
 
  class ScalarFieldSmoother : virtual public Debug {
 
  public:
    ScalarFieldSmoother();
    ~ScalarFieldSmoother() override;
 
    inline void setDimensionNumber(const int &dimensionNumber) {
      dimensionNumber_ = dimensionNumber;
    }
 
    inline void setInputDataPointer(void *data) {
      inputData_ = data;
    }
 
    inline void setOutputDataPointer(void *data) {
      outputData_ = data;
    }
 
    inline void setMaskDataPointer(const char *const mask) {
      mask_ = mask;
    }
 
    int preconditionTriangulation(AbstractTriangulation *triangulation) {
      // Pre-condition functions.
      if(triangulation) {
        triangulation->preconditionVertexNeighbors();
#ifdef TTK_ENABLE_MPI
        triangulation->preconditionExchangeGhostVertices();
#endif // TTK_ENABLE_MPI
      }
      return 0;
    }
 
    template <class dataType, class triangulationType = AbstractTriangulation>
    int smooth(const triangulationType *triangulation,
               const int &numberOfIterations) const;
 
  protected:
    int dimensionNumber_{1};
    void *inputData_{nullptr}, *outputData_{nullptr};
    const char *mask_{nullptr};
  };
 
} // namespace ttk
 
// template functions
template <class dataType, class triangulationType>
int ttk::ScalarFieldSmoother::smooth(const triangulationType *triangulation,
                                     const int &numberOfIterations) const {
 
  Timer t;
 
#ifndef TTK_ENABLE_KAMIKAZE
  if(!triangulation)
    return -1;
  if(!dimensionNumber_)
    return -2;
  if(!inputData_)
    return -3;
  if(!outputData_)
    return -4;
#endif
 
  SimplexId const vertexNumber = triangulation->getNumberOfVertices();
 
  std::vector<dataType> tmpData(vertexNumber * dimensionNumber_, 0);
 
  dataType *outputData = (dataType *)outputData_;
  dataType *inputData = (dataType *)inputData_;
  // init the output
#ifdef TTK_ENABLE_OPENMP
#pragma omp parallel for num_threads(threadNumber_)
#endif // TTK_ENABLE_OPENMP
  for(SimplexId i = 0; i < vertexNumber; i++) {
    for(int j = 0; j < dimensionNumber_; j++) {
      outputData[dimensionNumber_ * i + j]
        = inputData[dimensionNumber_ * i + j];
    }
  }
 
  printMsg("Smoothing " + std::to_string(vertexNumber) + " vertices", 0, 0,
           threadNumber_, ttk::debug::LineMode::REPLACE);
 
  int timeBuckets = 10;
  if(numberOfIterations < timeBuckets)
    timeBuckets = numberOfIterations;
 
  for(int it = 0; it < numberOfIterations; it++) {
#ifdef TTK_ENABLE_OPENMP
#pragma omp parallel for num_threads(threadNumber_)
#endif
    for(SimplexId i = 0; i < vertexNumber; i++) {
 
      // avoid to process masked vertices
      if(mask_ != nullptr && mask_[i] == 0)
        continue;
 
      for(int j = 0; j < dimensionNumber_; j++) {
        const auto curr{dimensionNumber_ * i + j};
        tmpData[curr] = outputData[curr];
 
        const auto neighborNumber = triangulation->getVertexNeighborNumber(i);
        for(SimplexId k = 0; k < neighborNumber; k++) {
          SimplexId neighborId = -1;
          triangulation->getVertexNeighbor(i, k, neighborId);
          tmpData[curr] += outputData[dimensionNumber_ * (neighborId) + j];
        }
        tmpData[curr] /= static_cast<double>(neighborNumber + 1);
      }
    }
 
    if(numberOfIterations) {
      // assign the tmpData back to the output
#ifdef TTK_ENABLE_OPENMP
#pragma omp parallel for num_threads(threadNumber_)
#endif // TTK_ENABLE_OPENMP
      for(SimplexId i = 0; i < vertexNumber; i++) {
        for(int j = 0; j < dimensionNumber_; j++) {
          // only set value for unmasked points
          if(mask_ == nullptr || mask_[i] != 0) {
            outputData[dimensionNumber_ * i + j]
              = tmpData[dimensionNumber_ * i + j];
          }
        }
      }
    }
#ifdef TTK_ENABLE_MPI
    if(ttk::isRunningWithMPI()) {
      // after each iteration we need to exchange the ghostcell values with our
      // neighbors
      exchangeGhostVertices<dataType, triangulationType>(
        outputData, triangulation, ttk::MPIcomm_, dimensionNumber_);
    }
#endif // TTK_ENABLE_MPI
 
    if(debugLevel_ >= (int)(debug::Priority::INFO)) {
      if(!(it % ((numberOfIterations) / timeBuckets))) {
        printMsg("Smoothing " + std::to_string(vertexNumber) + " vertices",
                 (it / (float)numberOfIterations), t.getElapsedTime(),
                 threadNumber_, debug::LineMode::REPLACE);
      }
    }
  }
 
  printMsg("Smoothed " + std::to_string(vertexNumber) + " vertices", 1,
           t.getElapsedTime(), threadNumber_);
 
  return 0;
}