#include <ttkTrackingFromPersistenceDiagrams.h>

Inheritance diagram for ttkTrackingFromPersistenceDiagrams:

Public Types
typedef ttkAlgorithm	Superclass

Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm	Superclass

Public Member Functions
virtual const char *	GetClassName ()

virtual int	IsA (const char *type)

virtual void	SetTolerance (double)

virtual double	GetTolerance ()

virtual void	SetPX (double)

virtual double	GetPX ()

virtual void	SetPY (double)

virtual double	GetPY ()

virtual void	SetPZ (double)

virtual double	GetPZ ()

virtual void	SetPE (double)

virtual double	GetPE ()

virtual void	SetPS (double)

virtual double	GetPS ()

virtual void	SetWassersteinMetric (const std::string &)

virtual std::string	GetWassersteinMetric ()

virtual void	SetDistanceAlgorithm (const std::string &)

virtual std::string	GetDistanceAlgorithm ()

virtual void	SetPVAlgorithm (int)

virtual int	GetPVAlgorithm ()

virtual void	SetUseGeometricSpacing (bool)

virtual bool	GetUseGeometricSpacing ()

virtual void	SetSpacing (double)

virtual double	GetSpacing ()

virtual void	SetDoPostProc (bool)

virtual bool	GetDoPostProc ()

virtual void	SetPostProcThresh (double)

virtual double	GetPostProcThresh ()

Public Member Functions inherited from ttkAlgorithm
void	UpdateThreadNumber ()

void	SetThreadNumber (int threadNumber)

void	SetUseAllCores (bool useAllCores)

void	SetDebugLevel (int debugLevel)

void	SetCompactTriangulationCacheSize (float cacheSize)

vtkDataArray *	GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)

vtkDataArray *	GetOrderArray (vtkDataSet const inputData, const int scalarArrayIdx, ttk::Triangulation triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)

vtkDataArray *	checkForGlobalAndComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray orderArray, ttk::Triangulation triangulation, const bool enforceOrderArrayIdx)

vtkDataArray *	ComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray oldOrderArray, ttk::Triangulation triangulation)

ttk::SimplexId *	GetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)

ttk::Triangulation *	GetTriangulation (vtkDataSet *dataSet)

int	ProcessRequest (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector) override

vtkDataSet *	GetOutput ()

vtkDataSet *	GetOutput (int)

void	SetInputData (vtkDataSet *)

void	SetInputData (int, vtkDataSet *)

void	AddInputData (vtkDataSet *)

void	AddInputData (int, vtkDataSet *)

template<typename inputType >
int	checkEmptyMPIInput (inputType *input)
	This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Static Public Member Functions
static ttkTrackingFromPersistenceDiagrams *	New ()

static int	IsTypeOf (const char *type)

static ttkTrackingFromPersistenceDiagrams *	SafeDownCast (vtkObject *o)

static int	buildMesh (const std::vector< ttk::trackingTuple > &trackings, const std::vector< std::vector< ttk::MatchingType > > &outputMatchings, const std::vector< ttk::DiagramType > &inputPersistenceDiagrams, const bool useGeometricSpacing, const double spacing, const bool doPostProc, const std::vector< std::set< int > > &trackingTupleToMerged, vtkPoints points, vtkUnstructuredGrid persistenceDiagram, vtkDoubleArray persistenceScalars, vtkDoubleArray valueScalars, vtkIntArray matchingIdScalars, vtkIntArray lengthScalars, vtkIntArray timeScalars, vtkIntArray componentIds, vtkIntArray *pointTypeScalars, const ttk::Debug &dbg)

Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static ttkAlgorithm *	SafeDownCast (vtkObject *o)

static std::string	GetOrderArrayName (vtkDataArray *const array)

static vtkInformationIntegerKey *	SAME_DATA_TYPE_AS_INPUT_PORT ()

Protected Member Functions
	ttkTrackingFromPersistenceDiagrams ()

int	FillInputPortInformation (int port, vtkInformation *info) override

int	FillOutputPortInformation (int port, vtkInformation *info) override

int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) override

Protected Member Functions inherited from ttkAlgorithm
	ttkAlgorithm ()

	~ttkAlgorithm () override

void	MPIGhostPipelinePreconditioning (vtkDataSet *input)

void	MPIPipelinePreconditioning (vtkDataSet input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation triangulation=nullptr)

bool	checkGlobalIdValidity (ttk::LongSimplexId globalIds, ttk::SimplexId simplexNumber, unsigned char ghost, int *rankArray)

int	GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)

void	MPITriangulationPreconditioning (ttk::Triangulation triangulation, vtkDataSet input)

virtual int	RequestDataObject (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector)

virtual int	RequestInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateTime (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateTimeDependentInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateExtent (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestDataNotGenerated (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestData (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

int	FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override

int	FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Member Functions inherited from ttk::TrackingFromPersistenceDiagrams
	TrackingFromPersistenceDiagrams ()

int	execute ()

int	performSingleMatching (int i, std::vector< ttk::DiagramType > &inputPersistenceDiagrams, std::vector< std::vector< MatchingType > > &outputMatchings, const std::string &algorithm, const std::string &wasserstein, double tolerance, double px, double py, double pz, double ps, double pe)

int	performMatchings (int numInputs, std::vector< ttk::DiagramType > &inputPersistenceDiagrams, std::vector< std::vector< MatchingType > > &outputMatchings, const std::string &algorithm, const std::string &wasserstein, double tolerance, double px, double py, double pz, double ps, double pe)

int	performTracking (std::vector< ttk::DiagramType > &allDiagrams, std::vector< std::vector< MatchingType > > &allMatchings, std::vector< trackingTuple > &trackings)

int	performPostProcess (const std::vector< ttk::DiagramType > &allDiagrams, const std::vector< trackingTuple > &trackings, std::vector< std::set< int > > &trackingTupleToMerged, const double postProcThresh)

int	setInputDataPointer (int idx, void *data)

void	setNumberOfInputs (int numberOfInputs)

Additional Inherited Members
Protected Attributes inherited from ttkAlgorithm
float	CompactTriangulationCacheSize {0.2f}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Protected Attributes inherited from ttk::TrackingFromPersistenceDiagrams
int	numberOfInputs_ {}

void **	inputData_ {}

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

Definition at line 12 of file ttkTrackingFromPersistenceDiagrams.h.

Member Typedef Documentation

◆ Superclass

typedef ttkAlgorithm ttkTrackingFromPersistenceDiagrams::Superclass

Definition at line 20 of file ttkTrackingFromPersistenceDiagrams.h.

Constructor & Destructor Documentation

◆ ttkTrackingFromPersistenceDiagrams()

ttkTrackingFromPersistenceDiagrams::ttkTrackingFromPersistenceDiagrams ( )

protected

Definition at line 17 of file ttkTrackingFromPersistenceDiagrams.cpp.

Member Function Documentation

◆ buildMesh()

int ttkTrackingFromPersistenceDiagrams::buildMesh	(	const std::vector< ttk::trackingTuple > &	trackings,
		const std::vector< std::vector< ttk::MatchingType > > &	outputMatchings,
		const std::vector< ttk::DiagramType > &	inputPersistenceDiagrams,
		const bool	useGeometricSpacing,
		const double	spacing,
		const bool	doPostProc,
		const std::vector< std::set< int > > &	trackingTupleToMerged,
		vtkPoints *	points,
		vtkUnstructuredGrid *	persistenceDiagram,
		vtkDoubleArray *	persistenceScalars,
		vtkDoubleArray *	valueScalars,
		vtkIntArray *	matchingIdScalars,
		vtkIntArray *	lengthScalars,
		vtkIntArray *	timeScalars,
		vtkIntArray *	componentIds,
		vtkIntArray *	pointTypeScalars,
		const ttk::Debug &	dbg
	)

static

Definition at line 40 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ FillInputPortInformation()

int ttkTrackingFromPersistenceDiagrams::FillInputPortInformation	(	int	port,
		vtkInformation *	info
	)

overrideprotected

Definition at line 22 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ FillOutputPortInformation()

int ttkTrackingFromPersistenceDiagrams::FillOutputPortInformation	(	int	port,
		vtkInformation *	info
	)

overrideprotected

Definition at line 31 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ GetClassName()

virtual const char * ttkTrackingFromPersistenceDiagrams::GetClassName ( )

virtual

Reimplemented from ttkAlgorithm.

◆ GetDistanceAlgorithm()

virtual std::string ttkTrackingFromPersistenceDiagrams::GetDistanceAlgorithm ( )

virtual

◆ GetDoPostProc()

virtual bool ttkTrackingFromPersistenceDiagrams::GetDoPostProc ( )

virtual

◆ GetPE()

virtual double ttkTrackingFromPersistenceDiagrams::GetPE ( )

virtual

◆ GetPostProcThresh()

virtual double ttkTrackingFromPersistenceDiagrams::GetPostProcThresh ( )

virtual

◆ GetPS()

virtual double ttkTrackingFromPersistenceDiagrams::GetPS ( )

virtual

◆ GetPVAlgorithm()

virtual int ttkTrackingFromPersistenceDiagrams::GetPVAlgorithm ( )

virtual

◆ GetPX()

virtual double ttkTrackingFromPersistenceDiagrams::GetPX ( )

virtual

◆ GetPY()

virtual double ttkTrackingFromPersistenceDiagrams::GetPY ( )

virtual

◆ GetPZ()

virtual double ttkTrackingFromPersistenceDiagrams::GetPZ ( )

virtual

◆ GetSpacing()

virtual double ttkTrackingFromPersistenceDiagrams::GetSpacing ( )

virtual

◆ GetTolerance()

virtual double ttkTrackingFromPersistenceDiagrams::GetTolerance ( )

virtual

◆ GetUseGeometricSpacing()

virtual bool ttkTrackingFromPersistenceDiagrams::GetUseGeometricSpacing ( )

virtual

◆ GetWassersteinMetric()

virtual std::string ttkTrackingFromPersistenceDiagrams::GetWassersteinMetric ( )

virtual

◆ IsA()

virtual int ttkTrackingFromPersistenceDiagrams::IsA ( const char * type )

virtual

Reimplemented from ttkAlgorithm.

◆ IsTypeOf()

static int ttkTrackingFromPersistenceDiagrams::IsTypeOf ( const char * type )

static

◆ New()

static ttkTrackingFromPersistenceDiagrams * ttkTrackingFromPersistenceDiagrams::New ( )

static

◆ RequestData()

int ttkTrackingFromPersistenceDiagrams::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

overrideprotected

Definition at line 289 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ SafeDownCast()

static ttkTrackingFromPersistenceDiagrams * ttkTrackingFromPersistenceDiagrams::SafeDownCast ( vtkObject * o )

static

◆ SetDistanceAlgorithm()

virtual void ttkTrackingFromPersistenceDiagrams::SetDistanceAlgorithm ( const std::string & )

virtual

◆ SetDoPostProc()

virtual void ttkTrackingFromPersistenceDiagrams::SetDoPostProc ( bool )

virtual

◆ SetPE()

virtual void ttkTrackingFromPersistenceDiagrams::SetPE ( double )

virtual

◆ SetPostProcThresh()

virtual void ttkTrackingFromPersistenceDiagrams::SetPostProcThresh ( double )

virtual

◆ SetPS()

virtual void ttkTrackingFromPersistenceDiagrams::SetPS ( double )

virtual

◆ SetPVAlgorithm()

virtual void ttkTrackingFromPersistenceDiagrams::SetPVAlgorithm ( int )

virtual

◆ SetPX()

virtual void ttkTrackingFromPersistenceDiagrams::SetPX ( double )

virtual

◆ SetPY()

virtual void ttkTrackingFromPersistenceDiagrams::SetPY ( double )

virtual

◆ SetPZ()

virtual void ttkTrackingFromPersistenceDiagrams::SetPZ ( double )

virtual

◆ SetSpacing()

virtual void ttkTrackingFromPersistenceDiagrams::SetSpacing ( double )

virtual

◆ SetTolerance()

virtual void ttkTrackingFromPersistenceDiagrams::SetTolerance ( double )

virtual

◆ SetUseGeometricSpacing()

virtual void ttkTrackingFromPersistenceDiagrams::SetUseGeometricSpacing ( bool )

virtual

◆ SetWassersteinMetric()

virtual void ttkTrackingFromPersistenceDiagrams::SetWassersteinMetric ( const std::string & )

virtual

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkTrackingFromPersistenceDiagrams/ttkTrackingFromPersistenceDiagrams.h
/home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkTrackingFromPersistenceDiagrams/ttkTrackingFromPersistenceDiagrams.cpp

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ ttkTrackingFromPersistenceDiagrams()

Member Function Documentation

◆ buildMesh()

◆ FillInputPortInformation()

◆ FillOutputPortInformation()

◆ GetClassName()

◆ GetDistanceAlgorithm()

◆ GetDoPostProc()

◆ GetPE()

◆ GetPostProcThresh()

◆ GetPS()

◆ GetPVAlgorithm()

◆ GetPX()

◆ GetPY()

◆ GetPZ()

◆ GetSpacing()

◆ GetTolerance()

◆ GetUseGeometricSpacing()

◆ GetWassersteinMetric()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ RequestData()

◆ SafeDownCast()

◆ SetDistanceAlgorithm()

◆ SetDoPostProc()

◆ SetPE()

◆ SetPostProcThresh()

◆ SetPS()

◆ SetPVAlgorithm()

◆ SetPX()

◆ SetPY()

◆ SetPZ()

◆ SetSpacing()

◆ SetTolerance()

◆ SetUseGeometricSpacing()

◆ SetWassersteinMetric()