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Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | List of all members
ttkTrackingFromPersistenceDiagrams Class Reference

#include <ttkTrackingFromPersistenceDiagrams.h>

Inheritance diagram for ttkTrackingFromPersistenceDiagrams:
ttkAlgorithm ttk::TrackingFromPersistenceDiagrams ttk::Debug ttk::Debug ttk::BaseClass ttk::BaseClass

Public Types

typedef ttkAlgorithm Superclass
 
- Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm Superclass
 

Public Member Functions

virtual const char * GetClassName ()
 
virtual int IsA (const char *type)
 
virtual void SetTolerance (double)
 
virtual double GetTolerance ()
 
virtual void SetPX (double)
 
virtual double GetPX ()
 
virtual void SetPY (double)
 
virtual double GetPY ()
 
virtual void SetPZ (double)
 
virtual double GetPZ ()
 
virtual void SetPE (double)
 
virtual double GetPE ()
 
virtual void SetPS (double)
 
virtual double GetPS ()
 
virtual void SetWassersteinMetric (const std::string &)
 
virtual std::string GetWassersteinMetric ()
 
virtual void SetDistanceAlgorithm (const std::string &)
 
virtual std::string GetDistanceAlgorithm ()
 
virtual void SetPVAlgorithm (int)
 
virtual int GetPVAlgorithm ()
 
virtual void SetUseGeometricSpacing (bool)
 
virtual bool GetUseGeometricSpacing ()
 
virtual void SetSpacing (double)
 
virtual double GetSpacing ()
 
virtual void SetDoPostProc (bool)
 
virtual bool GetDoPostProc ()
 
virtual void SetPostProcThresh (double)
 
virtual double GetPostProcThresh ()
 
- Public Member Functions inherited from ttkAlgorithm
void UpdateThreadNumber ()
 
void SetThreadNumber (int threadNumber)
 
void SetUseAllCores (bool useAllCores)
 
void SetDebugLevel (int debugLevel)
 
void SetCompactTriangulationCacheSize (float cacheSize)
 
vtkDataArray * GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)
 
vtkDataArray * GetOrderArray (vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)
 
vtkDataArray * checkForGlobalAndComputeOrderArray (vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx)
 
vtkDataArray * ComputeOrderArray (vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation)
 
ttk::SimplexIdGetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)
 
ttk::TriangulationGetTriangulation (vtkDataSet *dataSet)
 
int ProcessRequest (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override
 
vtkDataSet * GetOutput ()
 
vtkDataSet * GetOutput (int)
 
void SetInputData (vtkDataSet *)
 
void SetInputData (int, vtkDataSet *)
 
void AddInputData (vtkDataSet *)
 
void AddInputData (int, vtkDataSet *)
 
template<typename inputType >
int checkEmptyMPIInput (inputType *input)
 This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.
 
- Public Member Functions inherited from ttk::Debug
 Debug ()
 
 ~Debug () override
 
virtual int setDebugLevel (const int &debugLevel)
 
int setWrapper (const Wrapper *wrapper) override
 
int printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
void setDebugMsgPrefix (const std::string &prefix)
 
- Public Member Functions inherited from ttk::BaseClass
 BaseClass ()
 
virtual ~BaseClass ()=default
 
int getThreadNumber () const
 
virtual int setThreadNumber (const int threadNumber)
 

Static Public Member Functions

static ttkTrackingFromPersistenceDiagramsNew ()
 
static int IsTypeOf (const char *type)
 
static ttkTrackingFromPersistenceDiagramsSafeDownCast (vtkObject *o)
 
static int buildMesh (const std::vector< ttk::trackingTuple > &trackings, const std::vector< std::vector< ttk::MatchingType > > &outputMatchings, const std::vector< ttk::DiagramType > &inputPersistenceDiagrams, const bool useGeometricSpacing, const double spacing, const bool doPostProc, const std::vector< std::set< int > > &trackingTupleToMerged, vtkPoints *points, vtkUnstructuredGrid *persistenceDiagram, vtkDoubleArray *persistenceScalars, vtkDoubleArray *valueScalars, vtkIntArray *matchingIdScalars, vtkIntArray *lengthScalars, vtkIntArray *timeScalars, vtkIntArray *componentIds, vtkIntArray *pointTypeScalars, const ttk::Debug &dbg)
 
- Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithmNew ()
 
static int IsTypeOf (const char *type)
 
static ttkAlgorithmSafeDownCast (vtkObject *o)
 
static std::string GetOrderArrayName (vtkDataArray *const array)
 
static vtkInformationIntegerKey * SAME_DATA_TYPE_AS_INPUT_PORT ()
 

Protected Member Functions

 ttkTrackingFromPersistenceDiagrams ()
 
int FillInputPortInformation (int port, vtkInformation *info) override
 
int FillOutputPortInformation (int port, vtkInformation *info) override
 
int RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
 
- Protected Member Functions inherited from ttkAlgorithm
 ttkAlgorithm ()
 
 ~ttkAlgorithm () override
 
void MPIGhostPipelinePreconditioning (vtkDataSet *input)
 
void MPIPipelinePreconditioning (vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr)
 
bool checkGlobalIdValidity (ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray)
 
int GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)
 
void MPITriangulationPreconditioning (ttk::Triangulation *triangulation, vtkDataSet *input)
 
virtual int RequestDataObject (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector)
 
virtual int RequestInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateTime (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateTimeDependentInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateExtent (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestDataNotGenerated (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestData (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
int FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
 
int FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
 
- Protected Member Functions inherited from ttk::Debug
int printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
 
int welcomeMsg (std::ostream &stream)
 
- Protected Member Functions inherited from ttk::TrackingFromPersistenceDiagrams
 TrackingFromPersistenceDiagrams ()
 
int execute ()
 
int performSingleMatching (int i, std::vector< ttk::DiagramType > &inputPersistenceDiagrams, std::vector< std::vector< MatchingType > > &outputMatchings, const std::string &algorithm, const std::string &wasserstein, double tolerance, double px, double py, double pz, double ps, double pe)
 
int performMatchings (int numInputs, std::vector< ttk::DiagramType > &inputPersistenceDiagrams, std::vector< std::vector< MatchingType > > &outputMatchings, const std::string &algorithm, const std::string &wasserstein, double tolerance, double px, double py, double pz, double ps, double pe)
 
int performTracking (std::vector< ttk::DiagramType > &allDiagrams, std::vector< std::vector< MatchingType > > &allMatchings, std::vector< trackingTuple > &trackings)
 
int performPostProcess (const std::vector< ttk::DiagramType > &allDiagrams, const std::vector< trackingTuple > &trackings, std::vector< std::set< int > > &trackingTupleToMerged, const double postProcThresh)
 
int setInputDataPointer (int idx, void *data)
 
void setNumberOfInputs (int numberOfInputs)
 

Additional Inherited Members

- Protected Attributes inherited from ttkAlgorithm
float CompactTriangulationCacheSize {0.2f}
 
- Protected Attributes inherited from ttk::Debug
int debugLevel_
 
std::string debugMsgPrefix_
 
std::string debugMsgNamePrefix_
 
- Protected Attributes inherited from ttk::BaseClass
bool lastObject_
 
int threadNumber_
 
Wrapperwrapper_
 
- Protected Attributes inherited from ttk::TrackingFromPersistenceDiagrams
int numberOfInputs_ {}
 
void ** inputData_ {}
 
- Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode lastLineMode = ttk::debug::LineMode::NEW
 

Detailed Description

Definition at line 12 of file ttkTrackingFromPersistenceDiagrams.h.

Member Typedef Documentation

◆ Superclass

Definition at line 20 of file ttkTrackingFromPersistenceDiagrams.h.

Constructor & Destructor Documentation

◆ ttkTrackingFromPersistenceDiagrams()

ttkTrackingFromPersistenceDiagrams::ttkTrackingFromPersistenceDiagrams ( )
protected

Definition at line 17 of file ttkTrackingFromPersistenceDiagrams.cpp.

Member Function Documentation

◆ buildMesh()

int ttkTrackingFromPersistenceDiagrams::buildMesh ( const std::vector< ttk::trackingTuple > &  trackings,
const std::vector< std::vector< ttk::MatchingType > > &  outputMatchings,
const std::vector< ttk::DiagramType > &  inputPersistenceDiagrams,
const bool  useGeometricSpacing,
const double  spacing,
const bool  doPostProc,
const std::vector< std::set< int > > &  trackingTupleToMerged,
vtkPoints *  points,
vtkUnstructuredGrid *  persistenceDiagram,
vtkDoubleArray *  persistenceScalars,
vtkDoubleArray *  valueScalars,
vtkIntArray *  matchingIdScalars,
vtkIntArray *  lengthScalars,
vtkIntArray *  timeScalars,
vtkIntArray *  componentIds,
vtkIntArray *  pointTypeScalars,
const ttk::Debug dbg 
)
static

Definition at line 40 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ FillInputPortInformation()

int ttkTrackingFromPersistenceDiagrams::FillInputPortInformation ( int  port,
vtkInformation *  info 
)
overrideprotected

Definition at line 22 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ FillOutputPortInformation()

int ttkTrackingFromPersistenceDiagrams::FillOutputPortInformation ( int  port,
vtkInformation *  info 
)
overrideprotected

Definition at line 31 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ GetClassName()

virtual const char * ttkTrackingFromPersistenceDiagrams::GetClassName ( )
virtual

Reimplemented from ttkAlgorithm.

◆ GetDistanceAlgorithm()

virtual std::string ttkTrackingFromPersistenceDiagrams::GetDistanceAlgorithm ( )
virtual

◆ GetDoPostProc()

virtual bool ttkTrackingFromPersistenceDiagrams::GetDoPostProc ( )
virtual

◆ GetPE()

virtual double ttkTrackingFromPersistenceDiagrams::GetPE ( )
virtual

◆ GetPostProcThresh()

virtual double ttkTrackingFromPersistenceDiagrams::GetPostProcThresh ( )
virtual

◆ GetPS()

virtual double ttkTrackingFromPersistenceDiagrams::GetPS ( )
virtual

◆ GetPVAlgorithm()

virtual int ttkTrackingFromPersistenceDiagrams::GetPVAlgorithm ( )
virtual

◆ GetPX()

virtual double ttkTrackingFromPersistenceDiagrams::GetPX ( )
virtual

◆ GetPY()

virtual double ttkTrackingFromPersistenceDiagrams::GetPY ( )
virtual

◆ GetPZ()

virtual double ttkTrackingFromPersistenceDiagrams::GetPZ ( )
virtual

◆ GetSpacing()

virtual double ttkTrackingFromPersistenceDiagrams::GetSpacing ( )
virtual

◆ GetTolerance()

virtual double ttkTrackingFromPersistenceDiagrams::GetTolerance ( )
virtual

◆ GetUseGeometricSpacing()

virtual bool ttkTrackingFromPersistenceDiagrams::GetUseGeometricSpacing ( )
virtual

◆ GetWassersteinMetric()

virtual std::string ttkTrackingFromPersistenceDiagrams::GetWassersteinMetric ( )
virtual

◆ IsA()

virtual int ttkTrackingFromPersistenceDiagrams::IsA ( const char *  type)
virtual

Reimplemented from ttkAlgorithm.

◆ IsTypeOf()

static int ttkTrackingFromPersistenceDiagrams::IsTypeOf ( const char *  type)
static

◆ New()

static ttkTrackingFromPersistenceDiagrams * ttkTrackingFromPersistenceDiagrams::New ( )
static

◆ RequestData()

int ttkTrackingFromPersistenceDiagrams::RequestData ( vtkInformation *  request,
vtkInformationVector **  inputVector,
vtkInformationVector *  outputVector 
)
overrideprotected

Definition at line 289 of file ttkTrackingFromPersistenceDiagrams.cpp.

◆ SafeDownCast()

static ttkTrackingFromPersistenceDiagrams * ttkTrackingFromPersistenceDiagrams::SafeDownCast ( vtkObject *  o)
static

◆ SetDistanceAlgorithm()

virtual void ttkTrackingFromPersistenceDiagrams::SetDistanceAlgorithm ( const std::string &  )
virtual

◆ SetDoPostProc()

virtual void ttkTrackingFromPersistenceDiagrams::SetDoPostProc ( bool  )
virtual

◆ SetPE()

virtual void ttkTrackingFromPersistenceDiagrams::SetPE ( double  )
virtual

◆ SetPostProcThresh()

virtual void ttkTrackingFromPersistenceDiagrams::SetPostProcThresh ( double  )
virtual

◆ SetPS()

virtual void ttkTrackingFromPersistenceDiagrams::SetPS ( double  )
virtual

◆ SetPVAlgorithm()

virtual void ttkTrackingFromPersistenceDiagrams::SetPVAlgorithm ( int  )
virtual

◆ SetPX()

virtual void ttkTrackingFromPersistenceDiagrams::SetPX ( double  )
virtual

◆ SetPY()

virtual void ttkTrackingFromPersistenceDiagrams::SetPY ( double  )
virtual

◆ SetPZ()

virtual void ttkTrackingFromPersistenceDiagrams::SetPZ ( double  )
virtual

◆ SetSpacing()

virtual void ttkTrackingFromPersistenceDiagrams::SetSpacing ( double  )
virtual

◆ SetTolerance()

virtual void ttkTrackingFromPersistenceDiagrams::SetTolerance ( double  )
virtual

◆ SetUseGeometricSpacing()

virtual void ttkTrackingFromPersistenceDiagrams::SetUseGeometricSpacing ( bool  )
virtual

◆ SetWassersteinMetric()

virtual void ttkTrackingFromPersistenceDiagrams::SetWassersteinMetric ( const std::string &  )
virtual

The documentation for this class was generated from the following files: