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Public Member Functions | List of all members
ttk::PathMappingDistance Class Reference

#include <PathMappingDistance.h>

Inheritance diagram for ttk::PathMappingDistance:
ttk::Debug ttk::MergeTreeBase ttk::BaseClass ttk::Debug ttk::BaseClass

Public Member Functions

 PathMappingDistance ()
 ~PathMappingDistance () override=default
void setBaseMetric (int m)
void setAssignmentSolver (int assignmentSolver)
void setSquared (bool s)
void setComputeMapping (bool m)
void setPreprocess (bool p)
void setSaveTree (bool save)
template<class dataType>
dataType computeDistance (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::pair< std::pair< ftm::idNode, ftm::idNode >, std::pair< ftm::idNode, ftm::idNode > > > *outputMatching)
template<class dataType>
dataType execute (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, std::vector< std::pair< std::pair< ftm::idNode, ftm::idNode >, std::pair< ftm::idNode, ftm::idNode > > > *outputMatching)
template<class dataType>
dataType computeDistance (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > *outputMatching)
template<class dataType>
dataType computeDistance (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > *outputMatching, std::vector< std::pair< std::pair< ftm::idNode, ftm::idNode >, std::pair< ftm::idNode, ftm::idNode > > > *outputMatching_path)
template<class dataType>
dataType execute (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > *outputMatching)
template<class dataType>
dataType computeDistance (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2)
template<class dataType>
dataType execute (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2)
Public Member Functions inherited from ttk::Debug
 Debug ()
 ~Debug () override
virtual int setDebugLevel (const int &debugLevel)
int setWrapper (const Wrapper *wrapper) override
int printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
int printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
void setDebugMsgPrefix (const std::string &prefix)
Public Member Functions inherited from ttk::BaseClass
 BaseClass ()
virtual ~BaseClass ()=default
int getThreadNumber () const
virtual int setThreadNumber (const int threadNumber)
Public Member Functions inherited from ttk::MergeTreeBase
 MergeTreeBase ()
void setAssignmentSolver (int assignmentSolver)
void setEpsilon1UseFarthestSaddle (bool b)
void setEpsilonTree1 (double epsilon)
void setEpsilonTree2 (double epsilon)
void setEpsilon2Tree1 (double epsilon)
void setEpsilon2Tree2 (double epsilon)
void setEpsilon3Tree1 (double epsilon)
void setEpsilon3Tree2 (double epsilon)
void setPersistenceThreshold (double pt)
void setParallelize (bool para)
void setNodePerTask (int npt)
void setBranchDecomposition (bool useBD)
void setNormalizedWasserstein (bool normalizedWasserstein)
void setKeepSubtree (bool keepSubtree)
void setNonMatchingWeight (double weight)
void setBarycenterMergeTree (bool imt)
void setDistanceSquaredRoot (bool distanceSquaredRoot)
void setUseMinMaxPair (bool useMinMaxPair)
void setDeleteMultiPersPairs (bool deleteMultiPersPairsT)
void setCleanTree (bool clean)
void setIsPersistenceDiagram (bool isPD)
void setJoinSplitMixtureCoefficient (const double mixtureCoefficient)
void setUseDoubleInput (const bool useDoubleInput)
std::vector< std::vector< int > > getTreesNodeCorr ()
double mixDistancesMinMaxPairWeight (bool isFirstInput)
double mixDistancesWeight (bool isFirstInput)
template<class dataType>
double mixDistances (dataType distance1, dataType distance2)
template<class dataType>
void mixDistancesMatrix (std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)
template<class dataType>
void mergeSaddle (ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)
template<class dataType>
void persistenceMerging (ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)
void deletePersistenceDiagramsPairs (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &nodes)
template<class dataType>
void keepMostImportantPairs (ftm::FTMTree_MT *tree, int n, bool useBD)
template<class dataType>
void persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)
template<class dataType>
void persistenceThresholding (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)
template<class dataType>
void persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT)
template<class dataType>
void persistenceThresholding (ftm::FTMTree_MT *tree)
template<class dataType>
void verifyOrigins (ftm::FTMTree_MT *tree)
template<class dataType>
void preprocessTree (ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)
template<class dataType>
ftm::FTMTree_MT * computeBranchDecomposition (ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)
template<class dataType>
void dontUseMinMaxPair (ftm::FTMTree_MT *tree)
void verifyPairsTree (ftm::FTMTree_MT *tree)
template<class dataType>
void deleteMultiPersPairs (ftm::FTMTree_MT *tree, bool useBD)
template<class dataType>
void preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true, bool removeMergedSaddles=false)
template<class dataType>
void preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true, bool removeMergedSaddles=false)
void reverseNodeCorr (ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)
template<class dataType>
void mtFlattening (ftm::MergeTree< dataType > &mt)
template<class dataType>
void mtsFlattening (std::vector< ftm::MergeTree< dataType > > &mts)
double getSizeLimitMetric (std::vector< ftm::FTMTree_MT * > &trees)
template<class dataType>
void copyMinMaxPair (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)
template<class dataType>
std::tuple< int, dataType > fixMergedRootOrigin (ftm::FTMTree_MT *tree)
template<class dataType>
void branchDecompositionToTree (ftm::FTMTree_MT *tree)
template<class dataType>
void putBackMergedNodes (ftm::FTMTree_MT *tree)
template<class dataType>
void postprocessingPipeline (ftm::FTMTree_MT *tree)
template<class dataType>
void convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)
template<class dataType>
void convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)
template<class dataType>
void identifyRealMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)
template<class dataType>
dataType computeDistance (dataType x1, dataType x2, dataType y1, dataType y2, double power=2)
template<class dataType>
dataType deleteCost (const ftm::FTMTree_MT *tree, ftm::idNode nodeId)
template<class dataType>
dataType insertCost (const ftm::FTMTree_MT *tree, ftm::idNode nodeId)
template<class dataType>
dataType relabelCostOnly (const ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, const ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
template<class dataType>
dataType relabelCost (const ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, const ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
void getParamNames (std::vector< std::string > &paramNames)
double getParamValueFromName (std::string &paramName)
void setParamValueFromName (std::string &paramName, double value)
void getTreesStats (std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)
void printTreesStats (std::vector< ftm::FTMTree_MT * > &trees)
template<class dataType>
void printTreesStats (std::vector< ftm::MergeTree< dataType > > &trees)
template<class dataType>
void printTableVector (std::vector< std::vector< dataType > > &table)
template<class dataType>
void printTable (dataType *table, int nRows, int nCols)
void printMatching (std::vector< MatchingType > &matchings)
void printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)
void printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)
template<class dataType>
void printPairs (std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)
template<class dataType>
void printOutputMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true)

Additional Inherited Members

Protected Member Functions inherited from ttk::Debug
int printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
int welcomeMsg (std::ostream &stream)
Protected Attributes inherited from ttk::Debug
int debugLevel_
std::string debugMsgPrefix_
std::string debugMsgNamePrefix_
Protected Attributes inherited from ttk::BaseClass
bool lastObject_
int threadNumber_
Wrapper * wrapper_
Protected Attributes inherited from ttk::MergeTreeBase
int assignmentSolverID_ = 0
bool epsilon1UseFarthestSaddle_ = false
double epsilonTree1_ = 0
double epsilonTree2_ = 0
double epsilon2Tree1_ = 100
double epsilon2Tree2_ = 100
double epsilon3Tree1_ = 100
double epsilon3Tree2_ = 100
double persistenceThreshold_ = 0
bool barycenterMergeTree_ = false
bool useMinMaxPair_ = true
bool deleteMultiPersPairs_ = false
bool branchDecomposition_ = true
int wassersteinPower_ = 2
bool normalizedWasserstein_ = true
bool keepSubtree_ = false
double nonMatchingWeight_ = 1.0
bool distanceSquaredRoot_ = true
bool useFullMerge_ = false
bool isPersistenceDiagram_ = false
bool convertToDiagram_ = false
double mixtureCoefficient_ = 0.5
bool useDoubleInput_ = false
bool parallelize_ = true
int nodePerTask_ = 32
bool cleanTree_ = true
std::vector< std::vector< int > > treesNodeCorr_
Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

Definition at line 40 of file PathMappingDistance.h.

Constructor & Destructor Documentation

◆ PathMappingDistance()

ttk::PathMappingDistance::PathMappingDistance ( )
inline

Definition at line 316 of file PathMappingDistance.h.

◆ ~PathMappingDistance()

ttk::PathMappingDistance::~PathMappingDistance ( )
overridedefault

Member Function Documentation

◆ computeDistance() [1/4]

template<class dataType>
dataType ttk::PathMappingDistance::computeDistance ( ftm::FTMTree_MT * tree1,
ftm::FTMTree_MT * tree2 )
inline

Definition at line 802 of file PathMappingDistance.h.

◆ computeDistance() [2/4]

template<class dataType>
dataType ttk::PathMappingDistance::computeDistance ( ftm::FTMTree_MT * tree1,
ftm::FTMTree_MT * tree2,
std::vector< std::pair< std::pair< ftm::idNode, ftm::idNode >, std::pair< ftm::idNode, ftm::idNode > > > * outputMatching )
inline

Definition at line 348 of file PathMappingDistance.h.

◆ computeDistance() [3/4]

template<class dataType>
dataType ttk::PathMappingDistance::computeDistance ( ftm::FTMTree_MT * tree1,
ftm::FTMTree_MT * tree2,
std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > * outputMatching )
inline

Definition at line 697 of file PathMappingDistance.h.

◆ computeDistance() [4/4]

template<class dataType>
dataType ttk::PathMappingDistance::computeDistance ( ftm::FTMTree_MT * tree1,
ftm::FTMTree_MT * tree2,
std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > * outputMatching,
std::vector< std::pair< std::pair< ftm::idNode, ftm::idNode >, std::pair< ftm::idNode, ftm::idNode > > > * outputMatching_path )
inline

Definition at line 732 of file PathMappingDistance.h.

◆ execute() [1/3]

template<class dataType>
dataType ttk::PathMappingDistance::execute ( ftm::MergeTree< dataType > & mTree1,
ftm::MergeTree< dataType > & mTree2 )
inline

Definition at line 810 of file PathMappingDistance.h.

◆ execute() [2/3]

template<class dataType>
dataType ttk::PathMappingDistance::execute ( ftm::MergeTree< dataType > & mTree1,
ftm::MergeTree< dataType > & mTree2,
std::vector< std::pair< std::pair< ftm::idNode, ftm::idNode >, std::pair< ftm::idNode, ftm::idNode > > > * outputMatching )
inline

Definition at line 659 of file PathMappingDistance.h.

◆ execute() [3/3]

template<class dataType>
dataType ttk::PathMappingDistance::execute ( ftm::MergeTree< dataType > & mTree1,
ftm::MergeTree< dataType > & mTree2,
std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > * outputMatching )
inline

Definition at line 768 of file PathMappingDistance.h.

◆ setAssignmentSolver()

void ttk::PathMappingDistance::setAssignmentSolver ( int assignmentSolver)
inline

Definition at line 327 of file PathMappingDistance.h.

◆ setBaseMetric()

void ttk::PathMappingDistance::setBaseMetric ( int m)
inline

Definition at line 323 of file PathMappingDistance.h.

◆ setComputeMapping()

void ttk::PathMappingDistance::setComputeMapping ( bool m)
inline

Definition at line 335 of file PathMappingDistance.h.

◆ setPreprocess()

void ttk::PathMappingDistance::setPreprocess ( bool p)
inline

Definition at line 339 of file PathMappingDistance.h.

◆ setSaveTree()

void ttk::PathMappingDistance::setSaveTree ( bool save)
inline

Definition at line 343 of file PathMappingDistance.h.

◆ setSquared()

void ttk::PathMappingDistance::setSquared ( bool s)
inline

Definition at line 331 of file PathMappingDistance.h.

The documentation for this class was generated from the following file:
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