TTK VTK-filter that wraps the ttk::DistanceMatrixDistortion module. More...

#include <ttkDistanceMatrixDistortion.h>

Inheritance diagram for ttkDistanceMatrixDistortion:

Public Types
typedef ttkAlgorithm	Superclass
Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm	Superclass

Public Member Functions
virtual void	SetSelectFieldsWithRegexpHigh (bool)
virtual bool	GetSelectFieldsWithRegexpHigh ()
virtual void	SetSelectFieldsWithRegexpLow (bool)
virtual bool	GetSelectFieldsWithRegexpLow ()
virtual void	SetDoNotNormalize (bool)
virtual bool	GetDoNotNormalize ()
virtual void	SetRegexpStringHigh (const std::string &)
virtual std::string	GetRegexpStringHigh ()
virtual void	SetRegexpStringLow (const std::string &)
virtual std::string	GetRegexpStringLow ()
void	ClearScalarFieldsHigh ()
void	ClearScalarFieldsLow ()
virtual const char *	GetClassName ()
virtual int	IsA (const char *type)
void	SetScalarFieldsHigh (const std::string &s)
void	SetScalarFieldsLow (const std::string &s)
Public Member Functions inherited from ttkAlgorithm
void	UpdateThreadNumber ()
void	SetThreadNumber (int threadNumber)
void	SetUseAllCores (bool useAllCores)
void	SetDebugLevel (int debugLevel)
void	SetCompactTriangulationCacheSize (float cacheSize)
vtkDataArray *	GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)
vtkDataArray *	GetOrderArray (vtkDataSet const inputData, const int scalarArrayIdx, ttk::Triangulation triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)
vtkDataArray *	checkForGlobalAndComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray orderArray, ttk::Triangulation triangulation, const bool enforceOrderArrayIdx)
vtkDataArray *	ComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray oldOrderArray, ttk::Triangulation triangulation)
ttk::SimplexId *	GetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)
ttk::Triangulation *	GetTriangulation (vtkDataSet *dataSet)
int	ProcessRequest (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector) override
vtkDataSet *	GetOutput ()
vtkDataSet *	GetOutput (int)
void	SetInputData (vtkDataSet *)
void	SetInputData (int, vtkDataSet *)
void	AddInputData (vtkDataSet *)
void	AddInputData (int, vtkDataSet *)
template<typename inputType>
int	checkEmptyMPIInput (inputType *input)
	This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.
Public Member Functions inherited from ttk::Debug
	Debug ()
	~Debug () override
virtual int	setDebugLevel (const int &debugLevel)
int	setWrapper (const Wrapper *wrapper) override
int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
void	setDebugMsgPrefix (const std::string &prefix)
Public Member Functions inherited from ttk::BaseClass
	BaseClass ()
virtual	~BaseClass ()=default
int	getThreadNumber () const
virtual int	setThreadNumber (const int threadNumber)

Static Public Member Functions
static ttkDistanceMatrixDistortion *	New ()
static int	IsTypeOf (const char *type)
static ttkDistanceMatrixDistortion *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithm *	New ()
static int	IsTypeOf (const char *type)
static ttkAlgorithm *	SafeDownCast (vtkObject *o)
static std::string	GetOrderArrayName (vtkDataArray *const array)
static vtkInformationIntegerKey *	SAME_DATA_TYPE_AS_INPUT_PORT ()

Protected Member Functions
	ttkDistanceMatrixDistortion ()
	~ttkDistanceMatrixDistortion () override=default
int	FillInputPortInformation (int port, vtkInformation *info) override
int	FillOutputPortInformation (int port, vtkInformation *info) override
int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) override
Protected Member Functions inherited from ttkAlgorithm
	ttkAlgorithm ()
	~ttkAlgorithm () override
void	MPIGhostPipelinePreconditioning (vtkDataSet *input)
void	MPIPipelinePreconditioning (vtkDataSet input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation triangulation=nullptr)
bool	checkGlobalIdValidity (ttk::LongSimplexId globalIds, ttk::SimplexId simplexNumber, unsigned char ghost, int *rankArray)
int	GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)
void	MPITriangulationPreconditioning (ttk::Triangulation triangulation, vtkDataSet input)
virtual int	RequestDataObject (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector)
virtual int	RequestInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))
virtual int	RequestUpdateTime (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))
virtual int	RequestUpdateTimeDependentInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))
virtual int	RequestUpdateExtent (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))
virtual int	RequestDataNotGenerated (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))
virtual int	RequestData (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))
int	FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
int	FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
int	welcomeMsg (std::ostream &stream)
Protected Member Functions inherited from ttk::DistanceMatrixDistortion
	DistanceMatrixDistortion ()
int	execute (const std::vector< double * > &highDistMatrix, const std::vector< double * > &lowDistMatrix, double &distortionValue, double *distortionVerticesValues) const

Additional Inherited Members
Protected Attributes inherited from ttkAlgorithm
float	CompactTriangulationCacheSize {0.2f}
Protected Attributes inherited from ttk::Debug
int	debugLevel_
std::string	debugMsgPrefix_
std::string	debugMsgNamePrefix_
Protected Attributes inherited from ttk::BaseClass
bool	lastObject_
int	threadNumber_
Wrapper *	wrapper_
Protected Attributes inherited from ttk::DistanceMatrixDistortion
bool	DoNotNormalize {false}
Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK VTK-filter that wraps the ttk::DistanceMatrixDistortion module.

Author: Alexandre Talon alexa.nosp@m.ndre.nosp@m..talo.nosp@m.n@li.nosp@m.p6.fr

Date: January 2022.

This VTK filter uses the ttk::DistanceMatrixDistortion module to compute the distortion between two distance matrices representing the same points (for instance in low and high dimensions), according to the SIM formula.

Parameters

Input0	vtkTable.
Input1	vtkTable.
Output	vtkTable.

This filter can be used as any other VTK filter (for instance, by using the sequence of calls SetInputData(), Update(), GetOutputDataObject()).

The input data array needs to be specified via the standard VTK call vtkAlgorithm::SetInputArrayToProcess() with the following parameters:

Parameters

idx	0 (FIXED: the first array the algorithm requires)
port	0 (FIXED: first port)
connection	0 (FIXED: first connection)
fieldAssociation	0 (FIXED: point data)
arrayName	(DYNAMIC: string identifier of the input array)

See the related ParaView example state files for usage examples within a VTK pipeline.

See also: ttk::DistanceMatrixDistortion; ttkAlgorithm

Definition at line 44 of file ttkDistanceMatrixDistortion.h.

Member Typedef Documentation

◆ Superclass

typedef ttkAlgorithm ttkDistanceMatrixDistortion::Superclass

Definition at line 83 of file ttkDistanceMatrixDistortion.h.

Constructor & Destructor Documentation

◆ ttkDistanceMatrixDistortion()

ttkDistanceMatrixDistortion::ttkDistanceMatrixDistortion ( )

protected

Definition at line 23 of file ttkDistanceMatrixDistortion.cpp.

◆ ~ttkDistanceMatrixDistortion()

ttkDistanceMatrixDistortion::~ttkDistanceMatrixDistortion ( )

overrideprotecteddefault

Member Function Documentation

◆ ClearScalarFieldsHigh()

void ttkDistanceMatrixDistortion::ClearScalarFieldsHigh ( )

inline

Definition at line 73 of file ttkDistanceMatrixDistortion.h.

◆ ClearScalarFieldsLow()

void ttkDistanceMatrixDistortion::ClearScalarFieldsLow ( )

inline

Definition at line 77 of file ttkDistanceMatrixDistortion.h.

◆ FillInputPortInformation()

int ttkDistanceMatrixDistortion::FillInputPortInformation	(	int	port,
		vtkInformation *	info )

overrideprotected

Definition at line 28 of file ttkDistanceMatrixDistortion.cpp.

◆ FillOutputPortInformation()

int ttkDistanceMatrixDistortion::FillOutputPortInformation	(	int	port,
		vtkInformation *	info )

overrideprotected

Definition at line 40 of file ttkDistanceMatrixDistortion.cpp.

◆ GetClassName()

virtual const char * ttkDistanceMatrixDistortion::GetClassName ( )

virtual

Reimplemented from ttkAlgorithm.

◆ GetDoNotNormalize()

virtual bool ttkDistanceMatrixDistortion::GetDoNotNormalize ( )

virtual

◆ GetRegexpStringHigh()

virtual std::string ttkDistanceMatrixDistortion::GetRegexpStringHigh ( )

virtual

◆ GetRegexpStringLow()

virtual std::string ttkDistanceMatrixDistortion::GetRegexpStringLow ( )

virtual

◆ GetSelectFieldsWithRegexpHigh()

virtual bool ttkDistanceMatrixDistortion::GetSelectFieldsWithRegexpHigh ( )

virtual

◆ GetSelectFieldsWithRegexpLow()

virtual bool ttkDistanceMatrixDistortion::GetSelectFieldsWithRegexpLow ( )

virtual

◆ IsA()

virtual int ttkDistanceMatrixDistortion::IsA ( const char * type )

virtual

Reimplemented from ttkAlgorithm.

◆ IsTypeOf()

int ttkDistanceMatrixDistortion::IsTypeOf ( const char * type )

static

◆ New()

ttkDistanceMatrixDistortion * ttkDistanceMatrixDistortion::New ( )

static

◆ RequestData()

int ttkDistanceMatrixDistortion::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector )

overrideprotected

Definition at line 63 of file ttkDistanceMatrixDistortion.cpp.

◆ SafeDownCast()

ttkDistanceMatrixDistortion * ttkDistanceMatrixDistortion::SafeDownCast ( vtkObject * o )

static

◆ SetDoNotNormalize()

virtual void ttkDistanceMatrixDistortion::SetDoNotNormalize ( bool )

virtual

◆ SetRegexpStringHigh()

virtual void ttkDistanceMatrixDistortion::SetRegexpStringHigh ( const std::string & )

virtual

◆ SetRegexpStringLow()

virtual void ttkDistanceMatrixDistortion::SetRegexpStringLow ( const std::string & )

virtual

◆ SetScalarFieldsHigh()

void ttkDistanceMatrixDistortion::SetScalarFieldsHigh ( const std::string & s )

inline

Definition at line 86 of file ttkDistanceMatrixDistortion.h.

◆ SetScalarFieldsLow()

void ttkDistanceMatrixDistortion::SetScalarFieldsLow ( const std::string & s )

inline

Definition at line 90 of file ttkDistanceMatrixDistortion.h.

◆ SetSelectFieldsWithRegexpHigh()

virtual void ttkDistanceMatrixDistortion::SetSelectFieldsWithRegexpHigh ( bool )

virtual

◆ SetSelectFieldsWithRegexpLow()

virtual void ttkDistanceMatrixDistortion::SetSelectFieldsWithRegexpLow ( bool )

virtual

The documentation for this class was generated from the following files:

/data/julien/git/github/tierny/ttk-fork/core/vtk/ttkDistanceMatrixDistortion/ttkDistanceMatrixDistortion.h
/data/julien/git/github/tierny/ttk-fork/core/vtk/ttkDistanceMatrixDistortion/ttkDistanceMatrixDistortion.cpp

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ ttkDistanceMatrixDistortion()

◆ ~ttkDistanceMatrixDistortion()

Member Function Documentation

◆ ClearScalarFieldsHigh()

◆ ClearScalarFieldsLow()

◆ FillInputPortInformation()

◆ FillOutputPortInformation()

◆ GetClassName()

◆ GetDoNotNormalize()

◆ GetRegexpStringHigh()

◆ GetRegexpStringLow()

◆ GetSelectFieldsWithRegexpHigh()

◆ GetSelectFieldsWithRegexpLow()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ RequestData()

◆ SafeDownCast()

◆ SetDoNotNormalize()

◆ SetRegexpStringHigh()

◆ SetRegexpStringLow()

◆ SetScalarFieldsHigh()

◆ SetScalarFieldsLow()

◆ SetSelectFieldsWithRegexpHigh()

◆ SetSelectFieldsWithRegexpLow()