ttkMergeTreeClustering Class Reference

TTK VTK-filter that wraps the ttk::MergeTreeClustering module. More...

#include <ttkMergeTreeClustering.h>

Inheritance diagram for ttkMergeTreeClustering:

Public Types
typedef ttkAlgorithm	Superclass
Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm	Superclass

Public Member Functions
void	SetEpsilon1UseFarthestSaddle (bool epsilon1UseFarthestSaddle)
virtual bool	GetEpsilon1UseFarthestSaddle ()
void	SetEpsilonTree1 (double epsilonTree1)
virtual double	GetEpsilonTree1 ()
void	SetEpsilon2Tree1 (double epsilon2Tree1)
virtual double	GetEpsilon2Tree1 ()
void	SetEpsilon3Tree1 (double epsilon3Tree1)
virtual double	GetEpsilon3Tree1 ()
void	SetPersistenceThreshold (double persistenceThreshold)
virtual double	GetPersistenceThreshold ()
void	SetUseMinMaxPair (bool useMinMaxPair)
virtual bool	GetUseMinMaxPair ()
void	SetDeleteMultiPersPairs (bool deleteMultiPersPairs)
virtual bool	GetDeleteMultiPersPairs ()
void	SetBackend (int newBackend)
virtual int	GetBackend ()
void	SetAlpha (double alpha)
virtual double	GetAlpha ()
void	SetAssignmentSolver (int assignmentSolver)
virtual int	GetAssignmentSolver ()
void	SetBranchDecomposition (bool branchDecomposition)
virtual bool	GetBranchDecomposition ()
void	SetDeterministic (bool deterministic)
virtual bool	GetDeterministic ()
void	SetNormalizedWasserstein (bool normalizedWasserstein)
virtual bool	GetNormalizedWasserstein ()
void	SetKeepSubtree (bool keepSubtree)
virtual bool	GetKeepSubtree ()
void	SetJoinSplitMixtureCoefficient (double joinSplitMixtureCoefficient)
virtual double	GetJoinSplitMixtureCoefficient ()
void	SetComputeBarycenter (bool computeBarycenter)
virtual bool	GetComputeBarycenter ()
void	SetNumberOfBarycenters (unsigned int numberOfBarycenters)
virtual unsigned int	GetNumberOfBarycenters ()
void	SetBarycenterSizeLimitPercent (double percent)
virtual double	GetBarycenterSizeLimitPercent ()
void	SetBranchMetric (int m)
void	SetPathMetric (int m)
void	SetNonMatchingWeight (double weight)
virtual double	GetNonMatchingWeight ()
virtual void	SetBarycenterPositionAlpha (bool)
virtual bool	GetBarycenterPositionAlpha ()
virtual void	SetOutputTrees (bool)
virtual bool	GetOutputTrees ()
virtual void	SetOutputSegmentation (bool)
virtual bool	GetOutputSegmentation ()
virtual void	SetPlanarLayout (bool)
virtual bool	GetPlanarLayout ()
virtual void	SetBranchDecompositionPlanarLayout (bool)
virtual bool	GetBranchDecompositionPlanarLayout ()
virtual void	SetBranchSpacing (double)
virtual double	GetBranchSpacing ()
virtual void	SetRescaleTreesIndividually (bool)
virtual bool	GetRescaleTreesIndividually ()
virtual void	SetDimensionSpacing (double)
virtual double	GetDimensionSpacing ()
virtual void	SetDimensionToShift (int)
virtual int	GetDimensionToShift ()
virtual void	SetImportantPairs (double)
virtual double	GetImportantPairs ()
virtual void	SetMaximumImportantPairs (int)
virtual int	GetMaximumImportantPairs ()
virtual void	SetMinimumImportantPairs (int)
virtual int	GetMinimumImportantPairs ()
virtual void	SetImportantPairsSpacing (double)
virtual double	GetImportantPairsSpacing ()
virtual void	SetNonImportantPairsSpacing (double)
virtual double	GetNonImportantPairsSpacing ()
virtual void	SetNonImportantPairsProximity (double)
virtual double	GetNonImportantPairsProximity ()
virtual void	SetExcludeImportantPairsLower (const std::string &)
virtual std::string	GetExcludeImportantPairsLower ()
virtual void	SetExcludeImportantPairsHigher (const std::string &)
virtual std::string	GetExcludeImportantPairsHigher ()
virtual const char *	GetClassName ()
virtual int	IsA (const char *type)
template<class dataType >
int	runCompute (vtkInformationVector *ttkNotUsed(outputVector), std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2)
template<class dataType >
int	runOutput (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &ttkNotUsed(inputTrees2))
Public Member Functions inherited from ttkAlgorithm
void	UpdateThreadNumber ()
void	SetThreadNumber (int threadNumber)
void	SetUseAllCores (bool useAllCores)
void	SetDebugLevel (int debugLevel)
void	SetCompactTriangulationCacheSize (float cacheSize)
vtkDataArray *	GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)
vtkDataArray *	GetOrderArray (vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)
vtkDataArray *	checkForGlobalAndComputeOrderArray (vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx)
vtkDataArray *	ComputeOrderArray (vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation)
ttk::SimplexId *	GetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)
ttk::Triangulation *	GetTriangulation (vtkDataSet *dataSet)
int	ProcessRequest (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override
vtkDataSet *	GetOutput ()
vtkDataSet *	GetOutput (int)
void	SetInputData (vtkDataSet *)
void	SetInputData (int, vtkDataSet *)
void	AddInputData (vtkDataSet *)
void	AddInputData (int, vtkDataSet *)
template<typename inputType >
int	checkEmptyMPIInput (inputType *input)
	This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.
Public Member Functions inherited from ttk::Debug
	Debug ()
	~Debug () override
virtual int	setDebugLevel (const int &debugLevel)
int	setWrapper (const Wrapper *wrapper) override
int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
void	setDebugMsgPrefix (const std::string &prefix)
Public Member Functions inherited from ttk::BaseClass
	BaseClass ()
virtual	~BaseClass ()=default
int	getThreadNumber () const
virtual int	setThreadNumber (const int threadNumber)

Static Public Member Functions
static ttkMergeTreeClustering *	New ()
static int	IsTypeOf (const char *type)
static ttkMergeTreeClustering *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithm *	New ()
static int	IsTypeOf (const char *type)
static ttkAlgorithm *	SafeDownCast (vtkObject *o)
static std::string	GetOrderArrayName (vtkDataArray *const array)
static vtkInformationIntegerKey *	SAME_DATA_TYPE_AS_INPUT_PORT ()

Protected Member Functions
	ttkMergeTreeClustering ()
	~ttkMergeTreeClustering () override
int	FillInputPortInformation (int port, vtkInformation *info) override
int	FillOutputPortInformation (int port, vtkInformation *info) override
int	RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
template<class dataType >
int	run (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2)
template<class dataType >
int	runCompute (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2)
template<class dataType >
int	runOutput (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2)
Protected Member Functions inherited from ttkAlgorithm
	ttkAlgorithm ()
	~ttkAlgorithm () override
void	MPIGhostPipelinePreconditioning (vtkDataSet *input)
void	MPIPipelinePreconditioning (vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr)
bool	checkGlobalIdValidity (ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray)
int	GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)
void	MPITriangulationPreconditioning (ttk::Triangulation *triangulation, vtkDataSet *input)
virtual int	RequestDataObject (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector)
virtual int	RequestInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestUpdateTime (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestUpdateTimeDependentInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestUpdateExtent (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestDataNotGenerated (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestData (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
int	FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
int	FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
int	welcomeMsg (std::ostream &stream)

Additional Inherited Members
Protected Attributes inherited from ttkAlgorithm
float	CompactTriangulationCacheSize {0.2f}
Protected Attributes inherited from ttk::Debug
int	debugLevel_
std::string	debugMsgPrefix_
std::string	debugMsgNamePrefix_
Protected Attributes inherited from ttk::BaseClass
bool	lastObject_
int	threadNumber_
Wrapper *	wrapper_
Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK VTK-filter that wraps the ttk::MergeTreeClustering module.

Author

Mathieu Pont (mathi.nosp@m.eu.p.nosp@m.ont@l.nosp@m.ip6..nosp@m.fr)

Date

2021.

This VTK filter uses the ttk::MergeTreeClustering module to compute the edit distance between two merge trees.

Parameters

Input	vtkMultiBlockDataSet Input trees
Input	(optional) vtkMultiBlockDataSet Input trees
Output	vtkMultiBlockDataSet Input trees (processed)
Output	vtkMultiBlockDataSet Centroids trees
Output	vtkMultiBlockDataSet Matchings

This filter can be used as any other VTK filter (for instance, by using the sequence of calls SetInputData(), Update(), GetOutputDataObject()).

See the related ParaView example state files for usage examples within a VTK pipeline.

Related publication
"Wasserstein Distances, Geodesics and Barycenters of Merge Trees"
Mathieu Pont, Jules Vidal, Julie Delon, Julien Tierny.
Proc. of IEEE VIS 2021.
IEEE Transactions on Visualization and Computer Graphics, 2021

See also

ttk::MergeTreeClustering

ttkAlgorithm

Online examples:

• Merge Tree Clustering example
  
• Merge Tree Feature Tracking example
  
• Merge tree Wasserstein Auto-Encoder example
  
• Merge Tree Principal Geodesic Analysis example
  

Definition at line 62 of file ttkMergeTreeClustering.h.

Member Typedef Documentation

Superclass

typedef ttkAlgorithm ttkMergeTreeClustering::Superclass

Definition at line 412 of file ttkMergeTreeClustering.h.

Constructor & Destructor Documentation

ttkMergeTreeClustering()

ttkMergeTreeClustering::ttkMergeTreeClustering ( )

protected

Implement the filter constructor and destructor (see cpp file)

Implement the filter constructor and destructor in the cpp file.

The constructor has to specify the number of input and output ports with the functions SetNumberOfInputPorts and SetNumberOfOutputPorts, respectively. It should also set default values for all filter parameters.

The destructor is usually empty unless you want to manage memory explicitly, by for example allocating memory on the heap that needs to be freed when the filter is destroyed.

Definition at line 44 of file ttkMergeTreeClustering.cpp.

~ttkMergeTreeClustering()

ttkMergeTreeClustering::~ttkMergeTreeClustering ( )

overrideprotecteddefault

Member Function Documentation

FillInputPortInformation()

int ttkMergeTreeClustering::FillInputPortInformation ( int  port, vtkInformation *  info  )

overrideprotected

Specify the input data type of each input port (see cpp file)

Specify the required input data type of each input port

This method specifies the required input object data types of the filter by adding the vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE() key to the port information.

Definition at line 59 of file ttkMergeTreeClustering.cpp.

FillOutputPortInformation()

int ttkMergeTreeClustering::FillOutputPortInformation ( int  port, vtkInformation *  info  )

overrideprotected

Specify the data object type of each output port (see cpp file)

Specify the data object type of each output port

This method specifies in the port information object the data type of the corresponding output objects. It is possible to either explicitly specify a type by adding a vtkDataObject::DATA_TYPE_NAME() key:

 info->Set( ttkAlgorithm::DATA_TYPE_NAME(), "vtkUnstructuredGrid" );

or to pass a type of an input port to an output port by adding the ttkAlgorithm::SAME_DATA_TYPE_AS_INPUT_PORT() key (see below).

Note: prior to the execution of the RequestData method the pipeline will initialize empty output data objects based on this information.

Definition at line 87 of file ttkMergeTreeClustering.cpp.

GetAlpha()

virtual double ttkMergeTreeClustering::GetAlpha ( )

virtual

GetAssignmentSolver()

virtual int ttkMergeTreeClustering::GetAssignmentSolver ( )

virtual

GetBackend()

virtual int ttkMergeTreeClustering::GetBackend ( )

virtual

GetBarycenterPositionAlpha()

virtual bool ttkMergeTreeClustering::GetBarycenterPositionAlpha ( )

virtual

GetBarycenterSizeLimitPercent()

virtual double ttkMergeTreeClustering::GetBarycenterSizeLimitPercent ( )

virtual

GetBranchDecomposition()

virtual bool ttkMergeTreeClustering::GetBranchDecomposition ( )

virtual

GetBranchDecompositionPlanarLayout()

virtual bool ttkMergeTreeClustering::GetBranchDecompositionPlanarLayout ( )

virtual

GetBranchSpacing()

virtual double ttkMergeTreeClustering::GetBranchSpacing ( )

virtual

GetClassName()

virtual const char * ttkMergeTreeClustering::GetClassName ( )

virtual

Reimplemented from ttkAlgorithm.

GetComputeBarycenter()

virtual bool ttkMergeTreeClustering::GetComputeBarycenter ( )

virtual

GetDeleteMultiPersPairs()

virtual bool ttkMergeTreeClustering::GetDeleteMultiPersPairs ( )

virtual

GetDeterministic()

virtual bool ttkMergeTreeClustering::GetDeterministic ( )

virtual

GetDimensionSpacing()

virtual double ttkMergeTreeClustering::GetDimensionSpacing ( )

virtual

GetDimensionToShift()

virtual int ttkMergeTreeClustering::GetDimensionToShift ( )

virtual

GetEpsilon1UseFarthestSaddle()

virtual bool ttkMergeTreeClustering::GetEpsilon1UseFarthestSaddle ( )

virtual

GetEpsilon2Tree1()

virtual double ttkMergeTreeClustering::GetEpsilon2Tree1 ( )

virtual

GetEpsilon3Tree1()

virtual double ttkMergeTreeClustering::GetEpsilon3Tree1 ( )

virtual

GetEpsilonTree1()

virtual double ttkMergeTreeClustering::GetEpsilonTree1 ( )

virtual

GetExcludeImportantPairsHigher()

virtual std::string ttkMergeTreeClustering::GetExcludeImportantPairsHigher ( )

virtual

GetExcludeImportantPairsLower()

virtual std::string ttkMergeTreeClustering::GetExcludeImportantPairsLower ( )

virtual

GetImportantPairs()

virtual double ttkMergeTreeClustering::GetImportantPairs ( )

virtual

GetImportantPairsSpacing()

virtual double ttkMergeTreeClustering::GetImportantPairsSpacing ( )

virtual

GetJoinSplitMixtureCoefficient()

virtual double ttkMergeTreeClustering::GetJoinSplitMixtureCoefficient ( )

virtual

GetKeepSubtree()

virtual bool ttkMergeTreeClustering::GetKeepSubtree ( )

virtual

GetMaximumImportantPairs()

virtual int ttkMergeTreeClustering::GetMaximumImportantPairs ( )

virtual

GetMinimumImportantPairs()

virtual int ttkMergeTreeClustering::GetMinimumImportantPairs ( )

virtual

GetNonImportantPairsProximity()

virtual double ttkMergeTreeClustering::GetNonImportantPairsProximity ( )

virtual

GetNonImportantPairsSpacing()

virtual double ttkMergeTreeClustering::GetNonImportantPairsSpacing ( )

virtual

GetNonMatchingWeight()

virtual double ttkMergeTreeClustering::GetNonMatchingWeight ( )

virtual

GetNormalizedWasserstein()

virtual bool ttkMergeTreeClustering::GetNormalizedWasserstein ( )

virtual

GetNumberOfBarycenters()

virtual unsigned int ttkMergeTreeClustering::GetNumberOfBarycenters ( )

virtual

GetOutputSegmentation()

virtual bool ttkMergeTreeClustering::GetOutputSegmentation ( )

virtual

GetOutputTrees()

virtual bool ttkMergeTreeClustering::GetOutputTrees ( )

virtual

GetPersistenceThreshold()

virtual double ttkMergeTreeClustering::GetPersistenceThreshold ( )

virtual

GetPlanarLayout()

virtual bool ttkMergeTreeClustering::GetPlanarLayout ( )

virtual

GetRescaleTreesIndividually()

virtual bool ttkMergeTreeClustering::GetRescaleTreesIndividually ( )

virtual

GetUseMinMaxPair()

virtual bool ttkMergeTreeClustering::GetUseMinMaxPair ( )

virtual

IsA()

virtual int ttkMergeTreeClustering::IsA ( const char *  type )

virtual

Reimplemented from ttkAlgorithm.

IsTypeOf()

static int ttkMergeTreeClustering::IsTypeOf ( const char *  type )

static

New()

static ttkMergeTreeClustering * ttkMergeTreeClustering::New ( )

static

This static method and the macro below are VTK conventions on how to instantiate VTK objects. You don't have to modify this.

RequestData()

int ttkMergeTreeClustering::RequestData ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector  )

overrideprotected

Pass VTK data to the base code and convert base code output to VTK (see cpp file)

Pass VTK data to the base code and convert base code output to VTK

This method is called during the pipeline execution to update the already initialized output data objects based on the given input data objects and filter parameters.

Note: 1) The passed input data objects are validated based on the information provided by the FillInputPortInformation method. 2) The output objects are already initialized based on the information provided by the FillOutputPortInformation method.

Definition at line 110 of file ttkMergeTreeClustering.cpp.

run()

template<class dataType >

int ttkMergeTreeClustering::run ( vtkInformationVector *  outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees2  )

protected

Definition at line 153 of file ttkMergeTreeClustering.cpp.

runCompute() [1/2]

template<class dataType >

int ttkMergeTreeClustering::runCompute ( vtkInformationVector *  outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees2  )

protected

runCompute() [2/2]

template<class dataType >

int ttkMergeTreeClustering::runCompute	(	vtkInformationVector *	ttkNotUsedoutputVector,
		std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &	inputTrees,
		std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &	inputTrees2
	)

Definition at line 164 of file ttkMergeTreeClustering.cpp.

runOutput() [1/2]

template<class dataType >

int ttkMergeTreeClustering::runOutput ( vtkInformationVector *  outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees2  )

protected

runOutput() [2/2]

template<class dataType >

int ttkMergeTreeClustering::runOutput	(	vtkInformationVector *	outputVector,
		std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &	inputTrees,
		std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &	ttkNotUsedinputTrees2
	)

Definition at line 436 of file ttkMergeTreeClustering.cpp.

SafeDownCast()

static ttkMergeTreeClustering * ttkMergeTreeClustering::SafeDownCast ( vtkObject *  o )

static

SetAlpha()

void ttkMergeTreeClustering::SetAlpha ( double  alpha )

inline

Definition at line 266 of file ttkMergeTreeClustering.h.

SetAssignmentSolver()

void ttkMergeTreeClustering::SetAssignmentSolver ( int  assignmentSolver )

inline

Definition at line 275 of file ttkMergeTreeClustering.h.

SetBackend()

void ttkMergeTreeClustering::SetBackend ( int  newBackend )

inline

Definition at line 249 of file ttkMergeTreeClustering.h.

SetBarycenterPositionAlpha()

virtual void ttkMergeTreeClustering::SetBarycenterPositionAlpha ( bool  )

virtual

SetBarycenterSizeLimitPercent()

void ttkMergeTreeClustering::SetBarycenterSizeLimitPercent ( double  percent )

inline

Definition at line 331 of file ttkMergeTreeClustering.h.

SetBranchDecomposition()

void ttkMergeTreeClustering::SetBranchDecomposition ( bool  branchDecomposition )

inline

Definition at line 282 of file ttkMergeTreeClustering.h.

SetBranchDecompositionPlanarLayout()

virtual void ttkMergeTreeClustering::SetBranchDecompositionPlanarLayout ( bool  )

virtual

SetBranchMetric()

void ttkMergeTreeClustering::SetBranchMetric ( int  m )

inline

Definition at line 338 of file ttkMergeTreeClustering.h.

SetBranchSpacing()

virtual void ttkMergeTreeClustering::SetBranchSpacing ( double  )

virtual

SetComputeBarycenter()

void ttkMergeTreeClustering::SetComputeBarycenter ( bool  computeBarycenter )

inline

Definition at line 317 of file ttkMergeTreeClustering.h.

SetDeleteMultiPersPairs()

void ttkMergeTreeClustering::SetDeleteMultiPersPairs ( bool  deleteMultiPersPairs )

inline

Definition at line 241 of file ttkMergeTreeClustering.h.

SetDeterministic()

void ttkMergeTreeClustering::SetDeterministic ( bool  deterministic )

inline

Definition at line 289 of file ttkMergeTreeClustering.h.

SetDimensionSpacing()

virtual void ttkMergeTreeClustering::SetDimensionSpacing ( double  )

virtual

SetDimensionToShift()

virtual void ttkMergeTreeClustering::SetDimensionToShift ( int  )

virtual

SetEpsilon1UseFarthestSaddle()

void ttkMergeTreeClustering::SetEpsilon1UseFarthestSaddle ( bool  epsilon1UseFarthestSaddle )

inline

Automatically generate getters and setters of filter parameters via vtkMacros.

Definition at line 199 of file ttkMergeTreeClustering.h.

SetEpsilon2Tree1()

void ttkMergeTreeClustering::SetEpsilon2Tree1 ( double  epsilon2Tree1 )

inline

Definition at line 213 of file ttkMergeTreeClustering.h.

SetEpsilon3Tree1()

void ttkMergeTreeClustering::SetEpsilon3Tree1 ( double  epsilon3Tree1 )

inline

Definition at line 220 of file ttkMergeTreeClustering.h.

SetEpsilonTree1()

void ttkMergeTreeClustering::SetEpsilonTree1 ( double  epsilonTree1 )

inline

Definition at line 206 of file ttkMergeTreeClustering.h.

SetExcludeImportantPairsHigher()

virtual void ttkMergeTreeClustering::SetExcludeImportantPairsHigher ( const std::string &  )

virtual

SetExcludeImportantPairsLower()

virtual void ttkMergeTreeClustering::SetExcludeImportantPairsLower ( const std::string &  )

virtual

SetImportantPairs()

virtual void ttkMergeTreeClustering::SetImportantPairs ( double  )

virtual

SetImportantPairsSpacing()

virtual void ttkMergeTreeClustering::SetImportantPairsSpacing ( double  )

virtual

SetJoinSplitMixtureCoefficient()

void ttkMergeTreeClustering::SetJoinSplitMixtureCoefficient ( double  joinSplitMixtureCoefficient )

inline

Definition at line 310 of file ttkMergeTreeClustering.h.

SetKeepSubtree()

void ttkMergeTreeClustering::SetKeepSubtree ( bool  keepSubtree )

inline

Definition at line 303 of file ttkMergeTreeClustering.h.

SetMaximumImportantPairs()

virtual void ttkMergeTreeClustering::SetMaximumImportantPairs ( int  )

virtual

SetMinimumImportantPairs()

virtual void ttkMergeTreeClustering::SetMinimumImportantPairs ( int  )

virtual

SetNonImportantPairsProximity()

virtual void ttkMergeTreeClustering::SetNonImportantPairsProximity ( double  )

virtual

SetNonImportantPairsSpacing()

virtual void ttkMergeTreeClustering::SetNonImportantPairsSpacing ( double  )

virtual

SetNonMatchingWeight()

void ttkMergeTreeClustering::SetNonMatchingWeight ( double  weight )

inline

Definition at line 348 of file ttkMergeTreeClustering.h.

SetNormalizedWasserstein()

void ttkMergeTreeClustering::SetNormalizedWasserstein ( bool  normalizedWasserstein )

inline

Definition at line 296 of file ttkMergeTreeClustering.h.

SetNumberOfBarycenters()

void ttkMergeTreeClustering::SetNumberOfBarycenters ( unsigned int  numberOfBarycenters )

inline

Definition at line 324 of file ttkMergeTreeClustering.h.

SetOutputSegmentation()

virtual void ttkMergeTreeClustering::SetOutputSegmentation ( bool  )

virtual

SetOutputTrees()

virtual void ttkMergeTreeClustering::SetOutputTrees ( bool  )

virtual

SetPathMetric()

void ttkMergeTreeClustering::SetPathMetric ( int  m )

inline

Definition at line 343 of file ttkMergeTreeClustering.h.

SetPersistenceThreshold()

void ttkMergeTreeClustering::SetPersistenceThreshold ( double  persistenceThreshold )

inline

Definition at line 227 of file ttkMergeTreeClustering.h.

SetPlanarLayout()

virtual void ttkMergeTreeClustering::SetPlanarLayout ( bool  )

virtual

SetRescaleTreesIndividually()

virtual void ttkMergeTreeClustering::SetRescaleTreesIndividually ( bool  )

virtual

SetUseMinMaxPair()

void ttkMergeTreeClustering::SetUseMinMaxPair ( bool  useMinMaxPair )

inline

Definition at line 234 of file ttkMergeTreeClustering.h.

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The documentation for this class was generated from the following files:

• /home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkMergeTreeClustering/ttkMergeTreeClustering.h
• /home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkMergeTreeClustering/ttkMergeTreeClustering.cpp