This filter computes a signed distance field given a surface in input. More...

#include <ttkSignedDistanceField.h>

Inheritance diagram for ttkSignedDistanceField:

Public Types
typedef ttkAlgorithm	Superclass

Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm	Superclass

Public Member Functions
virtual const char *	GetClassName ()

virtual int	IsA (const char *type)

virtual void	SetExpandBox (bool)

virtual bool	GetExpandBox ()

virtual void	SetBackend (int)

virtual int	GetBackend ()

virtual void	SetFastMarchingOrder (int)

virtual int	GetFastMarchingOrder ()

vtkImageData *	GetOutput ()


virtual void	SetSamplingDimensions (int, int, int)

virtual void	SetSamplingDimensions (int[3])

virtual int *	GetSamplingDimensions ()

virtual void	GetSamplingDimensions (int &, int &, int &)

virtual void	GetSamplingDimensions (int[3])

Public Member Functions inherited from ttkAlgorithm
void	UpdateThreadNumber ()

void	SetThreadNumber (int threadNumber)

void	SetUseAllCores (bool useAllCores)

void	SetDebugLevel (int debugLevel)

void	SetCompactTriangulationCacheSize (float cacheSize)

vtkDataArray *	GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)

vtkDataArray *	GetOrderArray (vtkDataSet const inputData, const int scalarArrayIdx, ttk::Triangulation triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)

vtkDataArray *	checkForGlobalAndComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray orderArray, ttk::Triangulation triangulation, const bool enforceOrderArrayIdx)

vtkDataArray *	ComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray oldOrderArray, ttk::Triangulation triangulation)

ttk::SimplexId *	GetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)

ttk::Triangulation *	GetTriangulation (vtkDataSet *dataSet)

int	ProcessRequest (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector) override

vtkDataSet *	GetOutput ()

vtkDataSet *	GetOutput (int)

void	SetInputData (vtkDataSet *)

void	SetInputData (int, vtkDataSet *)

void	AddInputData (vtkDataSet *)

void	AddInputData (int, vtkDataSet *)

template<typename inputType >
int	checkEmptyMPIInput (inputType *input)
	This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Static Public Member Functions
static ttkSignedDistanceField *	New ()

static int	IsTypeOf (const char *type)

static ttkSignedDistanceField *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static ttkAlgorithm *	SafeDownCast (vtkObject *o)

static std::string	GetOrderArrayName (vtkDataArray *const array)

static vtkInformationIntegerKey *	SAME_DATA_TYPE_AS_INPUT_PORT ()

Protected Member Functions
	ttkSignedDistanceField ()

vtkTypeBool	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector ) override

int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) override

int	RequestInformation (vtkInformation , vtkInformationVector , vtkInformationVector ) override

int	RequestUpdateExtent (vtkInformation , vtkInformationVector , vtkInformationVector ) override

int	FillInputPortInformation (int, vtkInformation *) override

int	FillOutputPortInformation (int, vtkInformation *) override

void	computeOutputInformation (vtkInformationVector **inputVector)

Protected Member Functions inherited from ttkAlgorithm
	ttkAlgorithm ()

	~ttkAlgorithm () override

void	MPIGhostPipelinePreconditioning (vtkDataSet *input)

void	MPIPipelinePreconditioning (vtkDataSet input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation triangulation=nullptr)

bool	checkGlobalIdValidity (ttk::LongSimplexId globalIds, ttk::SimplexId simplexNumber, unsigned char ghost, int *rankArray)

int	GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)

void	MPITriangulationPreconditioning (ttk::Triangulation triangulation, vtkDataSet input)

virtual int	RequestDataObject (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector)

virtual int	RequestInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateTime (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateTimeDependentInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateExtent (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestDataNotGenerated (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestData (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

int	FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override

int	FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Member Functions inherited from ttk::SignedDistanceField
template<typename triangulationType >
void	findOutsideVertices (const SimplexId vertexId, triangulationType const boundingTriangulation, const std::vector< bool > &vertexIntersection, int const isInterior) const

int	getNeighbor (unsigned int vertexId, unsigned int dim, int dir) const

template<typename dataType >
void	fastMarching (std::vector< bool > &vertexIntersection, dataType const distances, int const isInterior) const

template<typename dataType >
void	fastMarchingIterativeNode (std::vector< VertexMarchingType > &vertexType, dataType const distances, int const isInterior) const

template<typename dataType >
void	fastMarchingIterativeBand (std::vector< VertexMarchingType > &vertexType, dataType const distances, int const isInterior) const

template<typename dataType >
dataType	fastMarchingUpdatePoint (unsigned int vertexId, dataType const distances, int const isInterior, std::vector< VertexMarchingType > &vertexType) const

template<typename dataType >
dataType	fastMarchingUpdatePointOrderTwo (unsigned int vertexId, dataType const distances, int const isInterior, std::vector< VertexMarchingType > &vertexType) const

template<typename dataType >
dataType	fastMarchingUpdatePointOrderOne (unsigned int vertexId, dataType const distances, int const isInterior, std::vector< VertexMarchingType > &vertexType) const

template<typename dataType >
bool	fastMarchingSolveQuadratic (unsigned int vertexId, dataType a, dataType b, dataType c, int *const isInterior, dataType &out) const

	SignedDistanceField ()

template<typename triangulationType , typename triangulationType2 >
int	execute (float const outputScalars, triangulationType const triangulation, triangulationType2 const boundingTriangulation, int const edgeCrossing, int *const isInterior) const

int	preconditionTriangulation (AbstractTriangulation *triangulation) const

Protected Attributes
int	SamplingDimensions [3]

bool	ExpandBox = true

int	Backend = 0

int	FastMarchingOrder = 1

Protected Attributes inherited from ttkAlgorithm
float	CompactTriangulationCacheSize {0.2f}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Protected Attributes inherited from ttk::SignedDistanceField
unsigned int	xResolution_ {1}

unsigned int	yResolution_ {1}

unsigned int	zResolution_ {1}

std::array< double, 3 >	spacing_ {1.0, 1.0, 1.0}

std::array< double, 3 >	invSpacingSquared_ {1.0, 1.0, 1.0}

bool	expandBox_ = true

int	backend_ = 0

int	fastMarchingOrder_ = 1

Additional Inherited Members
Protected Types inherited from ttk::SignedDistanceField
enum class	VertexMarchingType { FAR , NARROW , FROZEN }

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

This filter computes a signed distance field given a surface in input.

Author: Julien Tierny julie.nosp@m.n.ti.nosp@m.erny@.nosp@m.lip6.nosp@m..fr; Mohamed Amine Kissi moham.nosp@m.ed.k.nosp@m.issi@.nosp@m.lip6.nosp@m..fr; Mathieu Pont mathi.nosp@m.eu.p.nosp@m.ont@l.nosp@m.ip6..nosp@m.fr

Date: August 2023

It implements three backends (accelerated with a BVH data structure):

The exact backend
The fast marching backend, this method simulates a "wave" that move starting from the input surface and solve the eikonal equation vertex by vertex to approximate the signed distance field. It corresponds to the the following reference:

J.A. Sethian. A Fast Marching Level Set Method for Monotonically Advancing Fronts, Proc. Natl. Acad. Sci., 93, 4, pp.1591–1595, 1996

The fast marching band backend, a variant of the fast marching for which all the vertices being not yet updated and nearest the input surface are updated (instead of just one in the fast marching backend). It results in a faster method (due to parallelism) but is a rougher approximation.

Online examples:

Definition at line 48 of file ttkSignedDistanceField.h.

Member Typedef Documentation

◆ Superclass

typedef ttkAlgorithm ttkSignedDistanceField::Superclass

Definition at line 53 of file ttkSignedDistanceField.h.

Constructor & Destructor Documentation

◆ ttkSignedDistanceField()

ttkSignedDistanceField::ttkSignedDistanceField ( )

protected

Definition at line 17 of file ttkSignedDistanceField.cpp.

Member Function Documentation

◆ computeOutputInformation()

void ttkSignedDistanceField::computeOutputInformation ( vtkInformationVector ** inputVector )

protected

Definition at line 105 of file ttkSignedDistanceField.cpp.

◆ FillInputPortInformation()

int ttkSignedDistanceField::FillInputPortInformation	(	int	port,
		vtkInformation *	info
	)

overrideprotected

Definition at line 85 of file ttkSignedDistanceField.cpp.

◆ FillOutputPortInformation()

int ttkSignedDistanceField::FillOutputPortInformation	(	int	port,
		vtkInformation *	info
	)

overrideprotected

Definition at line 95 of file ttkSignedDistanceField.cpp.

◆ GetBackend()

virtual int ttkSignedDistanceField::GetBackend ( )

virtual

◆ GetClassName()

virtual const char * ttkSignedDistanceField::GetClassName ( )

virtual

Reimplemented from ttkAlgorithm.

◆ GetExpandBox()

virtual bool ttkSignedDistanceField::GetExpandBox ( )

virtual

◆ GetFastMarchingOrder()

virtual int ttkSignedDistanceField::GetFastMarchingOrder ( )

virtual

◆ GetOutput()

vtkImageData * ttkSignedDistanceField::GetOutput ( )

Get the output data for this algorithm.

Definition at line 23 of file ttkSignedDistanceField.cpp.

◆ GetSamplingDimensions() [1/3]

virtual int * ttkSignedDistanceField::GetSamplingDimensions ( )

virtual

◆ GetSamplingDimensions() [2/3]

virtual void ttkSignedDistanceField::GetSamplingDimensions	(	int &	,
		int &	,
		int &
	)

virtual

◆ GetSamplingDimensions() [3/3]

virtual void ttkSignedDistanceField::GetSamplingDimensions ( int [3] )

virtual

◆ IsA()

virtual int ttkSignedDistanceField::IsA ( const char * type )

virtual

Reimplemented from ttkAlgorithm.

◆ IsTypeOf()

static int ttkSignedDistanceField::IsTypeOf ( const char * type )

static

◆ New()

static ttkSignedDistanceField * ttkSignedDistanceField::New ( )

static

◆ ProcessRequest()

vtkTypeBool ttkSignedDistanceField::ProcessRequest	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

overrideprotected

Definition at line 29 of file ttkSignedDistanceField.cpp.

◆ RequestData()

int ttkSignedDistanceField::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

overrideprotected

Definition at line 144 of file ttkSignedDistanceField.cpp.

◆ RequestInformation()

int ttkSignedDistanceField::RequestInformation	(	vtkInformation *	,
		vtkInformationVector **	,
		vtkInformationVector *	outputVector
	)

overrideprotected

Definition at line 51 of file ttkSignedDistanceField.cpp.

◆ RequestUpdateExtent()

int ttkSignedDistanceField::RequestUpdateExtent	(	vtkInformation *	,
		vtkInformationVector **	inputVector,
		vtkInformationVector *
	)

overrideprotected

Definition at line 67 of file ttkSignedDistanceField.cpp.

◆ SafeDownCast()

static ttkSignedDistanceField * ttkSignedDistanceField::SafeDownCast ( vtkObject * o )

static

◆ SetBackend()

virtual void ttkSignedDistanceField::SetBackend ( int )

virtual

◆ SetExpandBox()

virtual void ttkSignedDistanceField::SetExpandBox ( bool )

virtual

◆ SetFastMarchingOrder()

virtual void ttkSignedDistanceField::SetFastMarchingOrder ( int )

virtual

◆ SetSamplingDimensions() [1/2]

virtual void ttkSignedDistanceField::SetSamplingDimensions	(	int	,
		int	,
		int
	)

virtual

Set/Get sampling dimension along each axis. Default will be [10,10,10]

◆ SetSamplingDimensions() [2/2]

virtual void ttkSignedDistanceField::SetSamplingDimensions ( int [3] )

virtual

Member Data Documentation

◆ Backend

int ttkSignedDistanceField::Backend = 0

protected

Definition at line 100 of file ttkSignedDistanceField.h.

◆ ExpandBox

bool ttkSignedDistanceField::ExpandBox = true

protected

Definition at line 99 of file ttkSignedDistanceField.h.

◆ FastMarchingOrder

int ttkSignedDistanceField::FastMarchingOrder = 1

protected

Definition at line 101 of file ttkSignedDistanceField.h.

◆ SamplingDimensions

int ttkSignedDistanceField::SamplingDimensions[3]

protected

Definition at line 98 of file ttkSignedDistanceField.h.

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkSignedDistanceField/ttkSignedDistanceField.h
/home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkSignedDistanceField/ttkSignedDistanceField.cpp

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ ttkSignedDistanceField()

Member Function Documentation

◆ computeOutputInformation()

◆ FillInputPortInformation()

◆ FillOutputPortInformation()

◆ GetBackend()

◆ GetClassName()

◆ GetExpandBox()

◆ GetFastMarchingOrder()

◆ GetOutput()

◆ GetSamplingDimensions() [1/3]

◆ GetSamplingDimensions() [2/3]

◆ GetSamplingDimensions() [3/3]

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ ProcessRequest()

◆ RequestData()

◆ RequestInformation()

◆ RequestUpdateExtent()

◆ SafeDownCast()

◆ SetBackend()

◆ SetExpandBox()

◆ SetFastMarchingOrder()

◆ SetSamplingDimensions() [1/2]

◆ SetSamplingDimensions() [2/2]

Member Data Documentation

◆ Backend

◆ ExpandBox

◆ FastMarchingOrder

◆ SamplingDimensions