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Public Member Functions | Protected Attributes | List of all members
ttk::MergeTreeVisualization Class Reference

#include <MergeTreeVisualization.h>

Inheritance diagram for ttk::MergeTreeVisualization:
ttk::Debug ttk::BaseClass ttkMergeTreeVisualization

Public Member Functions

 MergeTreeVisualization ()=default
 
 ~MergeTreeVisualization () override=default
 
void setBranchDecompositionPlanarLayout (bool b)
 
void setBranchSpacing (double d)
 
void setRescaleTreesIndividually (bool b)
 
void setImportantPairs (double d)
 
void setImportantPairsSpacing (double d)
 
void setNonImportantPairsSpacing (double d)
 
void setNonImportantPairsProximity (double d)
 
void setExcludeImportantPairsHigher (std::string &d)
 
void setExcludeImportantPairsLower (std::string &d)
 
template<class dataType >
void treePlanarLayoutBDImpl (ftm::FTMTree_MT *tree, std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId, std::vector< ftm::idNode > &ttkNotUsed(branching), std::vector< std::vector< ftm::idNode > > &nodeBranching)
 
template<class dataType >
void treePlanarLayoutImpl (ftm::FTMTree_MT *tree, std::tuple< double, double, double, double, double, double > oldBounds, double ttkNotUsed(refPersistence), std::vector< float > &retVec)
 
template<class dataType >
void treePlanarLayout (ftm::FTMTree_MT *tree, std::tuple< double, double, double, double, double, double > oldBounds, double refPersistence, std::vector< float > &res)
 
template<class dataType >
void persistenceDiagramPlanarLayout (ftm::FTMTree_MT *tree, std::vector< float > &res)
 
void printTuple (std::tuple< float, float, float, float > tup)
 
std::tuple< float, float, float, float > getBranchBounds (std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId, std::vector< ftm::idNode > &branching, ftm::FTMTree_MT *tree, ftm::idNode branchRoot, bool restricted=false)
 
bool isConflictingBoundsXOneWay (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
 
bool isConflictingBoundsX (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
 
bool isConflictingBoundsYOneWay (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
 
bool isConflictingBoundsY (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
 
bool isConflictingBounds (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
 
bool isConflictingBranchAndBound (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second, ftm::FTMTree_MT *tree, ftm::idNode branchNodeOrigin, std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId)
 
std::tuple< float, float, float, float > shiftBranchBoundsTuple (std::tuple< float, float, float, float > branchBound, float realShift)
 
void shiftBranchBounds (std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId, std::vector< ftm::idNode > &branching, std::vector< std::tuple< float, float, float, float > > &allBranchBounds, std::vector< ftm::idNode > &branchOrigins, ftm::FTMTree_MT *tree, ftm::idNode branchRoot, float shift)
 
void tupleToVector (std::tuple< double, double, double, double, double, double > &tup, std::vector< double > &vec)
 
std::tuple< double, double, double, double, double, double > vectorToTuple (std::vector< double > &vec)
 
std::tuple< double, double, double, double, double, double > getMaximalBounds (std::vector< std::tuple< double, double, double, double, double, double > > &allBounds, std::vector< int > &clusteringAssignmentT, int clusterID)
 
void parseExcludeImportantPairsString (std::string &excludeString, std::vector< double > &excludeVector)
 
- Public Member Functions inherited from ttk::Debug
 Debug ()
 
 ~Debug () override
 
virtual int setDebugLevel (const int &debugLevel)
 
int setWrapper (const Wrapper *wrapper) override
 
int printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
void setDebugMsgPrefix (const std::string &prefix)
 
- Public Member Functions inherited from ttk::BaseClass
 BaseClass ()
 
virtual ~BaseClass ()=default
 
int getThreadNumber () const
 
virtual int setThreadNumber (const int threadNumber)
 

Protected Attributes

bool branchDecompositionPlanarLayout_ = false
 
double branchSpacing_ = 1.
 
bool rescaleTreesIndividually_ = false
 
double importantPairs_ = 50.
 
double importantPairsSpacing_ = 1.
 
double nonImportantPairsSpacing_ = 1.
 
double nonImportantPairsProximity_ = 0.05
 
std::string excludeImportantPairsLower_ = ""
 
std::string excludeImportantPairsHigher_ = ""
 
std::vector< double > excludeImportantPairsLowerValues_
 
std::vector< double > excludeImportantPairsHigherValues_
 
- Protected Attributes inherited from ttk::Debug
int debugLevel_
 
std::string debugMsgPrefix_
 
std::string debugMsgNamePrefix_
 
- Protected Attributes inherited from ttk::BaseClass
bool lastObject_
 
int threadNumber_
 
Wrapperwrapper_
 

Additional Inherited Members

- Protected Member Functions inherited from ttk::Debug
int printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
 
int welcomeMsg (std::ostream &stream)
 
- Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode lastLineMode = ttk::debug::LineMode::NEW
 

Detailed Description

Definition at line 16 of file MergeTreeVisualization.h.

Constructor & Destructor Documentation

◆ MergeTreeVisualization()

ttk::MergeTreeVisualization::MergeTreeVisualization ( )
default

◆ ~MergeTreeVisualization()

ttk::MergeTreeVisualization::~MergeTreeVisualization ( )
overridedefault

Member Function Documentation

◆ getBranchBounds()

std::tuple< float, float, float, float > ttk::MergeTreeVisualization::getBranchBounds ( std::vector< float > &  retVec,
std::vector< LongSimplexId > &  treeSimplexId,
std::vector< ftm::idNode > &  branching,
ftm::FTMTree_MT tree,
ftm::idNode  branchRoot,
bool  restricted = false 
)
inline

Definition at line 796 of file MergeTreeVisualization.h.

◆ getMaximalBounds()

std::tuple< double, double, double, double, double, double > ttk::MergeTreeVisualization::getMaximalBounds ( std::vector< std::tuple< double, double, double, double, double, double > > &  allBounds,
std::vector< int > &  clusteringAssignmentT,
int  clusterID 
)
inline

Definition at line 950 of file MergeTreeVisualization.h.

◆ isConflictingBounds()

bool ttk::MergeTreeVisualization::isConflictingBounds ( std::tuple< float, float, float, float >  first,
std::tuple< float, float, float, float >  second 
)
inline

Definition at line 869 of file MergeTreeVisualization.h.

◆ isConflictingBoundsX()

bool ttk::MergeTreeVisualization::isConflictingBoundsX ( std::tuple< float, float, float, float >  first,
std::tuple< float, float, float, float >  second 
)
inline

Definition at line 848 of file MergeTreeVisualization.h.

◆ isConflictingBoundsXOneWay()

bool ttk::MergeTreeVisualization::isConflictingBoundsXOneWay ( std::tuple< float, float, float, float >  first,
std::tuple< float, float, float, float >  second 
)
inline

Definition at line 839 of file MergeTreeVisualization.h.

◆ isConflictingBoundsY()

bool ttk::MergeTreeVisualization::isConflictingBoundsY ( std::tuple< float, float, float, float >  first,
std::tuple< float, float, float, float >  second 
)
inline

Definition at line 863 of file MergeTreeVisualization.h.

◆ isConflictingBoundsYOneWay()

bool ttk::MergeTreeVisualization::isConflictingBoundsYOneWay ( std::tuple< float, float, float, float >  first,
std::tuple< float, float, float, float >  second 
)
inline

Definition at line 854 of file MergeTreeVisualization.h.

◆ isConflictingBranchAndBound()

bool ttk::MergeTreeVisualization::isConflictingBranchAndBound ( std::tuple< float, float, float, float >  first,
std::tuple< float, float, float, float >  second,
ftm::FTMTree_MT tree,
ftm::idNode  branchNodeOrigin,
std::vector< float > &  retVec,
std::vector< LongSimplexId > &  treeSimplexId 
)
inline

Definition at line 876 of file MergeTreeVisualization.h.

◆ parseExcludeImportantPairsString()

void ttk::MergeTreeVisualization::parseExcludeImportantPairsString ( std::string &  excludeString,
std::vector< double > &  excludeVector 
)
inline

Definition at line 976 of file MergeTreeVisualization.h.

◆ persistenceDiagramPlanarLayout()

template<class dataType >
void ttk::MergeTreeVisualization::persistenceDiagramPlanarLayout ( ftm::FTMTree_MT tree,
std::vector< float > &  res 
)
inline

Definition at line 758 of file MergeTreeVisualization.h.

◆ printTuple()

void ttk::MergeTreeVisualization::printTuple ( std::tuple< float, float, float, float >  tup)
inline

Definition at line 786 of file MergeTreeVisualization.h.

◆ setBranchDecompositionPlanarLayout()

void ttk::MergeTreeVisualization::setBranchDecompositionPlanarLayout ( bool  b)
inline

Definition at line 39 of file MergeTreeVisualization.h.

◆ setBranchSpacing()

void ttk::MergeTreeVisualization::setBranchSpacing ( double  d)
inline

Definition at line 42 of file MergeTreeVisualization.h.

◆ setExcludeImportantPairsHigher()

void ttk::MergeTreeVisualization::setExcludeImportantPairsHigher ( std::string &  d)
inline

Definition at line 60 of file MergeTreeVisualization.h.

◆ setExcludeImportantPairsLower()

void ttk::MergeTreeVisualization::setExcludeImportantPairsLower ( std::string &  d)
inline

Definition at line 64 of file MergeTreeVisualization.h.

◆ setImportantPairs()

void ttk::MergeTreeVisualization::setImportantPairs ( double  d)
inline

Definition at line 48 of file MergeTreeVisualization.h.

◆ setImportantPairsSpacing()

void ttk::MergeTreeVisualization::setImportantPairsSpacing ( double  d)
inline

Definition at line 51 of file MergeTreeVisualization.h.

◆ setNonImportantPairsProximity()

void ttk::MergeTreeVisualization::setNonImportantPairsProximity ( double  d)
inline

Definition at line 57 of file MergeTreeVisualization.h.

◆ setNonImportantPairsSpacing()

void ttk::MergeTreeVisualization::setNonImportantPairsSpacing ( double  d)
inline

Definition at line 54 of file MergeTreeVisualization.h.

◆ setRescaleTreesIndividually()

void ttk::MergeTreeVisualization::setRescaleTreesIndividually ( bool  b)
inline

Definition at line 45 of file MergeTreeVisualization.h.

◆ shiftBranchBounds()

void ttk::MergeTreeVisualization::shiftBranchBounds ( std::vector< float > &  retVec,
std::vector< LongSimplexId > &  treeSimplexId,
std::vector< ftm::idNode > &  branching,
std::vector< std::tuple< float, float, float, float > > &  allBranchBounds,
std::vector< ftm::idNode > &  branchOrigins,
ftm::FTMTree_MT tree,
ftm::idNode  branchRoot,
float  shift 
)
inline

Definition at line 903 of file MergeTreeVisualization.h.

◆ shiftBranchBoundsTuple()

std::tuple< float, float, float, float > ttk::MergeTreeVisualization::shiftBranchBoundsTuple ( std::tuple< float, float, float, float >  branchBound,
float  realShift 
)
inline

Definition at line 895 of file MergeTreeVisualization.h.

◆ treePlanarLayout()

template<class dataType >
void ttk::MergeTreeVisualization::treePlanarLayout ( ftm::FTMTree_MT tree,
std::tuple< double, double, double, double, double, double >  oldBounds,
double  refPersistence,
std::vector< float > &  res 
)
inline

Definition at line 749 of file MergeTreeVisualization.h.

◆ treePlanarLayoutBDImpl()

template<class dataType >
void ttk::MergeTreeVisualization::treePlanarLayoutBDImpl ( ftm::FTMTree_MT tree,
std::vector< float > &  retVec,
std::vector< LongSimplexId > &  treeSimplexId,
std::vector< ftm::idNode > &  ttkNotUsedbranching,
std::vector< std::vector< ftm::idNode > > &  nodeBranching 
)
inline

Definition at line 74 of file MergeTreeVisualization.h.

◆ treePlanarLayoutImpl()

template<class dataType >
void ttk::MergeTreeVisualization::treePlanarLayoutImpl ( ftm::FTMTree_MT tree,
std::tuple< double, double, double, double, double, double >  oldBounds,
double   ttkNotUsedrefPersistence,
std::vector< float > &  retVec 
)
inline

Definition at line 267 of file MergeTreeVisualization.h.

◆ tupleToVector()

void ttk::MergeTreeVisualization::tupleToVector ( std::tuple< double, double, double, double, double, double > &  tup,
std::vector< double > &  vec 
)
inline

Definition at line 937 of file MergeTreeVisualization.h.

◆ vectorToTuple()

std::tuple< double, double, double, double, double, double > ttk::MergeTreeVisualization::vectorToTuple ( std::vector< double > &  vec)
inline

Definition at line 946 of file MergeTreeVisualization.h.

Member Data Documentation

◆ branchDecompositionPlanarLayout_

bool ttk::MergeTreeVisualization::branchDecompositionPlanarLayout_ = false
protected

Definition at line 19 of file MergeTreeVisualization.h.

◆ branchSpacing_

double ttk::MergeTreeVisualization::branchSpacing_ = 1.
protected

Definition at line 20 of file MergeTreeVisualization.h.

◆ excludeImportantPairsHigher_

std::string ttk::MergeTreeVisualization::excludeImportantPairsHigher_ = ""
protected

Definition at line 27 of file MergeTreeVisualization.h.

◆ excludeImportantPairsHigherValues_

std::vector<double> ttk::MergeTreeVisualization::excludeImportantPairsHigherValues_
protected

Definition at line 29 of file MergeTreeVisualization.h.

◆ excludeImportantPairsLower_

std::string ttk::MergeTreeVisualization::excludeImportantPairsLower_ = ""
protected

Definition at line 26 of file MergeTreeVisualization.h.

◆ excludeImportantPairsLowerValues_

std::vector<double> ttk::MergeTreeVisualization::excludeImportantPairsLowerValues_
protected

Definition at line 28 of file MergeTreeVisualization.h.

◆ importantPairs_

double ttk::MergeTreeVisualization::importantPairs_ = 50.
protected

Definition at line 22 of file MergeTreeVisualization.h.

◆ importantPairsSpacing_

double ttk::MergeTreeVisualization::importantPairsSpacing_ = 1.
protected

Definition at line 23 of file MergeTreeVisualization.h.

◆ nonImportantPairsProximity_

double ttk::MergeTreeVisualization::nonImportantPairsProximity_ = 0.05
protected

Definition at line 25 of file MergeTreeVisualization.h.

◆ nonImportantPairsSpacing_

double ttk::MergeTreeVisualization::nonImportantPairsSpacing_ = 1.
protected

Definition at line 24 of file MergeTreeVisualization.h.

◆ rescaleTreesIndividually_

bool ttk::MergeTreeVisualization::rescaleTreesIndividually_ = false
protected

Definition at line 21 of file MergeTreeVisualization.h.


The documentation for this class was generated from the following file: