#include <MergeTreeVisualization.h>

Inheritance diagram for ttk::MergeTreeVisualization:

Public Member Functions
	MergeTreeVisualization ()=default
	~MergeTreeVisualization () override=default
void	setBranchDecompositionPlanarLayout (bool b)
void	setPathPlanarLayout (bool b)
void	setBranchSpacing (double d)
void	setRescaleTreesIndividually (bool b)
void	setImportantPairs (double d)
void	setImportantPairsSpacing (double d)
void	setNonImportantPairsSpacing (double d)
void	setNonImportantPairsProximity (double d)
void	setExcludeImportantPairsHigher (std::string &d)
void	setExcludeImportantPairsLower (std::string &d)
template<class dataType>
void	treePlanarLayoutBDImpl (ftm::FTMTree_MT *tree, std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId, std::vector< ftm::idNode > &ttkNotUsed(branching), std::vector< std::vector< ftm::idNode > > &nodeBranching)
template<class dataType>
void	pathPlanarLayout (ftm::FTMTree_MT *tree, std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId, std::vector< ftm::idNode > &leaves, double importantPairsGap)
void	shiftSubtreeBounds (ftm::FTMTree_MT *tree, ftm::idNode subtreeRoot, double shift, std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId)
template<class dataType>
void	treePlanarLayoutImpl (ftm::FTMTree_MT *tree, std::tuple< double, double, double, double, double, double > oldBounds, double ttkNotUsed(refPersistence), std::vector< float > &retVec)
template<class dataType>
void	treePlanarLayout (ftm::FTMTree_MT *tree, std::tuple< double, double, double, double, double, double > oldBounds, double refPersistence, std::vector< float > &res)
template<class dataType>
void	persistenceDiagramPlanarLayout (ftm::FTMTree_MT *tree, std::vector< float > &res)
void	printTuple (std::tuple< float, float, float, float > tup)
std::tuple< float, float, float, float >	getBranchBounds (std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId, std::vector< ftm::idNode > &branching, ftm::FTMTree_MT *tree, ftm::idNode branchRoot, bool restricted=false)
bool	isConflictingBoundsXOneWay (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
bool	isConflictingBoundsX (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
bool	isConflictingBoundsYOneWay (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
bool	isConflictingBoundsY (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
bool	isConflictingBounds (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second)
bool	isConflictingBranchAndBound (std::tuple< float, float, float, float > first, std::tuple< float, float, float, float > second, ftm::FTMTree_MT *tree, ftm::idNode branchNodeOrigin, std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId)
std::tuple< float, float, float, float >	shiftBranchBoundsTuple (std::tuple< float, float, float, float > branchBound, float realShift)
void	shiftBranchBounds (std::vector< float > &retVec, std::vector< LongSimplexId > &treeSimplexId, std::vector< ftm::idNode > &branching, std::vector< std::tuple< float, float, float, float > > &allBranchBounds, std::vector< ftm::idNode > &branchOrigins, ftm::FTMTree_MT *tree, ftm::idNode branchRoot, float shift)
void	tupleToVector (std::tuple< double, double, double, double, double, double > &tup, std::vector< double > &vec)
std::tuple< double, double, double, double, double, double >	vectorToTuple (std::vector< double > &vec)
std::tuple< double, double, double, double, double, double >	getMaximalBounds (std::vector< std::tuple< double, double, double, double, double, double > > &allBounds, std::vector< int > &clusteringAssignmentT, int clusterID)
void	parseExcludeImportantPairsString (std::string &excludeString, std::vector< double > &excludeVector)
Public Member Functions inherited from ttk::Debug
	Debug ()
	~Debug () override
virtual int	setDebugLevel (const int &debugLevel)
int	setWrapper (const Wrapper *wrapper) override
int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
void	setDebugMsgPrefix (const std::string &prefix)
Public Member Functions inherited from ttk::BaseClass
	BaseClass ()
virtual	~BaseClass ()=default
int	getThreadNumber () const
virtual int	setThreadNumber (const int threadNumber)

Protected Attributes
bool	branchDecompositionPlanarLayout_ = false
bool	pathPlanarLayout_ = false
double	branchSpacing_ = 1.
bool	rescaleTreesIndividually_ = false
double	importantPairs_ = 50.
double	importantPairsSpacing_ = 1.
double	nonImportantPairsSpacing_ = 1.
double	nonImportantPairsProximity_ = 0.05
std::string	excludeImportantPairsLower_ = ""
std::string	excludeImportantPairsHigher_ = ""
std::vector< double >	excludeImportantPairsLowerValues_
std::vector< double >	excludeImportantPairsHigherValues_
Protected Attributes inherited from ttk::Debug
int	debugLevel_
std::string	debugMsgPrefix_
std::string	debugMsgNamePrefix_
Protected Attributes inherited from ttk::BaseClass
bool	lastObject_
int	threadNumber_
Wrapper *	wrapper_

Additional Inherited Members
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
int	welcomeMsg (std::ostream &stream)
Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

Definition at line 16 of file MergeTreeVisualization.h.

Constructor & Destructor Documentation

◆ MergeTreeVisualization()

ttk::MergeTreeVisualization::MergeTreeVisualization ( )

default

◆ ~MergeTreeVisualization()

ttk::MergeTreeVisualization::~MergeTreeVisualization ( )

overridedefault

Member Function Documentation

◆ getBranchBounds()

std::tuple< float, float, float, float > ttk::MergeTreeVisualization::getBranchBounds	(	std::vector< float > &	retVec,
		std::vector< LongSimplexId > &	treeSimplexId,
		std::vector< ftm::idNode > &	branching,
		ftm::FTMTree_MT *	tree,
		ftm::idNode	branchRoot,
		bool	restricted = false )

inline

Definition at line 932 of file MergeTreeVisualization.h.

◆ getMaximalBounds()

std::tuple< double, double, double, double, double, double > ttk::MergeTreeVisualization::getMaximalBounds	(	std::vector< std::tuple< double, double, double, double, double, double > > &	allBounds,
		std::vector< int > &	clusteringAssignmentT,
		int	clusterID )

inline

Definition at line 1086 of file MergeTreeVisualization.h.

◆ isConflictingBounds()

bool ttk::MergeTreeVisualization::isConflictingBounds	(	std::tuple< float, float, float, float >	first,
		std::tuple< float, float, float, float >	second )

inline

Definition at line 1005 of file MergeTreeVisualization.h.

◆ isConflictingBoundsX()

bool ttk::MergeTreeVisualization::isConflictingBoundsX	(	std::tuple< float, float, float, float >	first,
		std::tuple< float, float, float, float >	second )

inline

Definition at line 984 of file MergeTreeVisualization.h.

◆ isConflictingBoundsXOneWay()

bool ttk::MergeTreeVisualization::isConflictingBoundsXOneWay	(	std::tuple< float, float, float, float >	first,
		std::tuple< float, float, float, float >	second )

inline

Definition at line 975 of file MergeTreeVisualization.h.

◆ isConflictingBoundsY()

bool ttk::MergeTreeVisualization::isConflictingBoundsY	(	std::tuple< float, float, float, float >	first,
		std::tuple< float, float, float, float >	second )

inline

Definition at line 999 of file MergeTreeVisualization.h.

◆ isConflictingBoundsYOneWay()

bool ttk::MergeTreeVisualization::isConflictingBoundsYOneWay	(	std::tuple< float, float, float, float >	first,
		std::tuple< float, float, float, float >	second )

inline

Definition at line 990 of file MergeTreeVisualization.h.

◆ isConflictingBranchAndBound()

bool ttk::MergeTreeVisualization::isConflictingBranchAndBound	(	std::tuple< float, float, float, float >	first,
		std::tuple< float, float, float, float >	second,
		ftm::FTMTree_MT *	tree,
		ftm::idNode	branchNodeOrigin,
		std::vector< float > &	retVec,
		std::vector< LongSimplexId > &	treeSimplexId )

inline

Definition at line 1012 of file MergeTreeVisualization.h.

◆ parseExcludeImportantPairsString()

void ttk::MergeTreeVisualization::parseExcludeImportantPairsString	(	std::string &	excludeString,
		std::vector< double > &	excludeVector )

inline

Definition at line 1112 of file MergeTreeVisualization.h.

◆ pathPlanarLayout()

template<class dataType>

void ttk::MergeTreeVisualization::pathPlanarLayout	(	ftm::FTMTree_MT *	tree,
		std::vector< float > &	retVec,
		std::vector< LongSimplexId > &	treeSimplexId,
		std::vector< ftm::idNode > &	leaves,
		double	importantPairsGap )

inline

Definition at line 274 of file MergeTreeVisualization.h.

◆ persistenceDiagramPlanarLayout()

template<class dataType>

void ttk::MergeTreeVisualization::persistenceDiagramPlanarLayout	(	ftm::FTMTree_MT *	tree,
		std::vector< float > &	res )

inline

Definition at line 894 of file MergeTreeVisualization.h.

◆ printTuple()

void ttk::MergeTreeVisualization::printTuple ( std::tuple< float, float, float, float > tup )

inline

Definition at line 922 of file MergeTreeVisualization.h.

◆ setBranchDecompositionPlanarLayout()

void ttk::MergeTreeVisualization::setBranchDecompositionPlanarLayout ( bool b )

inline

Definition at line 40 of file MergeTreeVisualization.h.

◆ setBranchSpacing()

void ttk::MergeTreeVisualization::setBranchSpacing ( double d )

inline

Definition at line 46 of file MergeTreeVisualization.h.

◆ setExcludeImportantPairsHigher()

void ttk::MergeTreeVisualization::setExcludeImportantPairsHigher ( std::string & d )

inline

Definition at line 64 of file MergeTreeVisualization.h.

◆ setExcludeImportantPairsLower()

void ttk::MergeTreeVisualization::setExcludeImportantPairsLower ( std::string & d )

inline

Definition at line 68 of file MergeTreeVisualization.h.

◆ setImportantPairs()

void ttk::MergeTreeVisualization::setImportantPairs ( double d )

inline

Definition at line 52 of file MergeTreeVisualization.h.

◆ setImportantPairsSpacing()

void ttk::MergeTreeVisualization::setImportantPairsSpacing ( double d )

inline

Definition at line 55 of file MergeTreeVisualization.h.

◆ setNonImportantPairsProximity()

void ttk::MergeTreeVisualization::setNonImportantPairsProximity ( double d )

inline

Definition at line 61 of file MergeTreeVisualization.h.

◆ setNonImportantPairsSpacing()

void ttk::MergeTreeVisualization::setNonImportantPairsSpacing ( double d )

inline

Definition at line 58 of file MergeTreeVisualization.h.

◆ setPathPlanarLayout()

void ttk::MergeTreeVisualization::setPathPlanarLayout ( bool b )

inline

Definition at line 43 of file MergeTreeVisualization.h.

◆ setRescaleTreesIndividually()

void ttk::MergeTreeVisualization::setRescaleTreesIndividually ( bool b )

inline

Definition at line 49 of file MergeTreeVisualization.h.

◆ shiftBranchBounds()

void ttk::MergeTreeVisualization::shiftBranchBounds	(	std::vector< float > &	retVec,
		std::vector< LongSimplexId > &	treeSimplexId,
		std::vector< ftm::idNode > &	branching,
		std::vector< std::tuple< float, float, float, float > > &	allBranchBounds,
		std::vector< ftm::idNode > &	branchOrigins,
		ftm::FTMTree_MT *	tree,
		ftm::idNode	branchRoot,
		float	shift )

inline

Definition at line 1039 of file MergeTreeVisualization.h.

◆ shiftBranchBoundsTuple()

std::tuple< float, float, float, float > ttk::MergeTreeVisualization::shiftBranchBoundsTuple	(	std::tuple< float, float, float, float >	branchBound,
		float	realShift )

inline

Definition at line 1031 of file MergeTreeVisualization.h.

◆ shiftSubtreeBounds()

void ttk::MergeTreeVisualization::shiftSubtreeBounds	(	ftm::FTMTree_MT *	tree,
		ftm::idNode	subtreeRoot,
		double	shift,
		std::vector< float > &	retVec,
		std::vector< LongSimplexId > &	treeSimplexId )

inline

Definition at line 381 of file MergeTreeVisualization.h.

◆ treePlanarLayout()

template<class dataType>

void ttk::MergeTreeVisualization::treePlanarLayout	(	ftm::FTMTree_MT *	tree,
		std::tuple< double, double, double, double, double, double >	oldBounds,
		double	refPersistence,
		std::vector< float > &	res )

inline

Definition at line 882 of file MergeTreeVisualization.h.

◆ treePlanarLayoutBDImpl()

template<class dataType>

void ttk::MergeTreeVisualization::treePlanarLayoutBDImpl	(	ftm::FTMTree_MT *	tree,
		std::vector< float > &	retVec,
		std::vector< LongSimplexId > &	treeSimplexId,
		std::vector< ftm::idNode > &	ttkNotUsedbranching,
		std::vector< std::vector< ftm::idNode > > &	nodeBranching )

inline

Definition at line 78 of file MergeTreeVisualization.h.

◆ treePlanarLayoutImpl()

template<class dataType>

void ttk::MergeTreeVisualization::treePlanarLayoutImpl	(	ftm::FTMTree_MT *	tree,
		std::tuple< double, double, double, double, double, double >	oldBounds,
		double	ttkNotUsedrefPersistence,
		std::vector< float > &	retVec )

inline

Definition at line 406 of file MergeTreeVisualization.h.

◆ tupleToVector()

void ttk::MergeTreeVisualization::tupleToVector	(	std::tuple< double, double, double, double, double, double > &	tup,
		std::vector< double > &	vec )

inline

Definition at line 1073 of file MergeTreeVisualization.h.

◆ vectorToTuple()

std::tuple< double, double, double, double, double, double > ttk::MergeTreeVisualization::vectorToTuple ( std::vector< double > & vec )

inline

Definition at line 1082 of file MergeTreeVisualization.h.

Member Data Documentation

◆ branchDecompositionPlanarLayout_

bool ttk::MergeTreeVisualization::branchDecompositionPlanarLayout_ = false

protected

Definition at line 19 of file MergeTreeVisualization.h.

◆ branchSpacing_

double ttk::MergeTreeVisualization::branchSpacing_ = 1.

protected

Definition at line 21 of file MergeTreeVisualization.h.

◆ excludeImportantPairsHigher_

std::string ttk::MergeTreeVisualization::excludeImportantPairsHigher_ = ""

protected

Definition at line 28 of file MergeTreeVisualization.h.

◆ excludeImportantPairsHigherValues_

std::vector<double> ttk::MergeTreeVisualization::excludeImportantPairsHigherValues_

protected

Definition at line 30 of file MergeTreeVisualization.h.

◆ excludeImportantPairsLower_

std::string ttk::MergeTreeVisualization::excludeImportantPairsLower_ = ""

protected

Definition at line 27 of file MergeTreeVisualization.h.

◆ excludeImportantPairsLowerValues_

std::vector<double> ttk::MergeTreeVisualization::excludeImportantPairsLowerValues_

protected

Definition at line 29 of file MergeTreeVisualization.h.

◆ importantPairs_

double ttk::MergeTreeVisualization::importantPairs_ = 50.

protected

Definition at line 23 of file MergeTreeVisualization.h.

◆ importantPairsSpacing_

double ttk::MergeTreeVisualization::importantPairsSpacing_ = 1.

protected

Definition at line 24 of file MergeTreeVisualization.h.

◆ nonImportantPairsProximity_

double ttk::MergeTreeVisualization::nonImportantPairsProximity_ = 0.05

protected

Definition at line 26 of file MergeTreeVisualization.h.

◆ nonImportantPairsSpacing_

double ttk::MergeTreeVisualization::nonImportantPairsSpacing_ = 1.

protected

Definition at line 25 of file MergeTreeVisualization.h.

◆ pathPlanarLayout_

bool ttk::MergeTreeVisualization::pathPlanarLayout_ = false

protected

Definition at line 20 of file MergeTreeVisualization.h.

◆ rescaleTreesIndividually_

bool ttk::MergeTreeVisualization::rescaleTreesIndividually_ = false

protected

Definition at line 22 of file MergeTreeVisualization.h.

The documentation for this class was generated from the following file:

/data/julien/git/github/tierny/ttk-fork/core/base/planarGraphLayout/MergeTreeVisualization.h

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MergeTreeVisualization()

◆ ~MergeTreeVisualization()

Member Function Documentation

◆ getBranchBounds()

◆ getMaximalBounds()

◆ isConflictingBounds()

◆ isConflictingBoundsX()

◆ isConflictingBoundsXOneWay()

◆ isConflictingBoundsY()

◆ isConflictingBoundsYOneWay()

◆ isConflictingBranchAndBound()

◆ parseExcludeImportantPairsString()

◆ pathPlanarLayout()

◆ persistenceDiagramPlanarLayout()

◆ printTuple()

◆ setBranchDecompositionPlanarLayout()

◆ setBranchSpacing()

◆ setExcludeImportantPairsHigher()

◆ setExcludeImportantPairsLower()

◆ setImportantPairs()

◆ setImportantPairsSpacing()

◆ setNonImportantPairsProximity()

◆ setNonImportantPairsSpacing()

◆ setPathPlanarLayout()

◆ setRescaleTreesIndividually()

◆ shiftBranchBounds()

◆ shiftBranchBoundsTuple()

◆ shiftSubtreeBounds()

◆ treePlanarLayout()

◆ treePlanarLayoutBDImpl()

◆ treePlanarLayoutImpl()

◆ tupleToVector()

◆ vectorToTuple()

Member Data Documentation

◆ branchDecompositionPlanarLayout_

◆ branchSpacing_

◆ excludeImportantPairsHigher_

◆ excludeImportantPairsHigherValues_

◆ excludeImportantPairsLower_

◆ excludeImportantPairsLowerValues_

◆ importantPairs_

◆ importantPairsSpacing_

◆ nonImportantPairsProximity_

◆ nonImportantPairsSpacing_

◆ pathPlanarLayout_

◆ rescaleTreesIndividually_