TTK FTRGraph processing package. More...

#include <FTRGraph.h>

Inheritance diagram for ttk::ftr::FTRGraph< ScalarType, triangulationType >:

Public Member Functions
	FTRGraph (triangulationType *mesh)

	FTRGraph ()

void	build ()

int	preconditionTriangulation (triangulationType *triangulation)

Graph &&	extractOutputGraph ()

int	setThreadNumber (const int nb) override

int	setDebugLevel (const int &lvl) override
	Control the verbosity of the base code.

void	setParams (const Params &p)

void	setScalars (const void *scalars)
	Scalar field used to compute the Reeb Graph.

void	setVertexSoSoffsets (SimplexId *sos)

DynamicGraph< idVertex > &	dynGraph (const Propagation *const lp)

DynamicGraph< idVertex > &	dynGraph (const bool goUp)

DynamicGraph< idVertex > &	dynGraphOpposite (const Propagation *const lp)

Public Member Functions inherited from ttk::ftr::Allocable
void	setNumberOfElmt (const idVertex nbVerts)

template<typename type >
void	fillVector (std::vector< type > &vect, const type &elmt)

virtual void	alloc ()=0

virtual void	init ()=0

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

virtual int	setWrapper (const Wrapper *wrapper)

Protected Member Functions
void	criticalSearch ()

void	sweepFrowSeeds ()

void	sweepSequential ()

std::string	printMesh () const

std::string	printEdge (const idEdge edgeId, const Propagation *const localProp) const

std::string	printTriangle (const idCell cellId, const Propagation *const localProp) const

void	printGraph (const int verbosity) const

void	printTime (Timer &timer, const std::string &msg) const

void	alloc () override

void	init () override

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Additional Inherited Members
Protected Attributes inherited from ttk::ftr::Allocable
idVertex	nbElmt_ = nullVertex
	Allocation may depends on the number of vertices.

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

template<typename ScalarType, typename triangulationType>
class ttk::ftr::FTRGraph< ScalarType, triangulationType >

TTK FTRGraph processing package.

Author: charles gueunet charl.nosp@m.es.g.nosp@m.ueune.nosp@m.t+tt.nosp@m.k@gma.nosp@m.il.c.nosp@m.om

Date: 2018-01-15

FTRGraph is a TTK processing package that takes a scalar field on the input and produces a scalar field on the output.

See also: ttk::Triangulation; vtkFTRGraph.cpp for a usage example.

Related publication
"Task-based Augmented Reeb Graphs with Dynamic ST-Trees"
Charles Gueunet, Pierre Fortin, Julien Jomier, Julien Tierny
EGPGV19: Eurographics Symposium on Parallel Graphics and Visualization

Online examples:

Harmonic Skeleton example

Definition at line 77 of file FTRGraph.h.

Constructor & Destructor Documentation

◆ FTRGraph() [1/2]

template<typename ScalarType , typename triangulationType >

ttk::ftr::FTRGraph< ScalarType, triangulationType >::FTRGraph ( triangulationType * mesh )

explicit

Definition at line 32 of file FTRGraph_Template.h.

◆ FTRGraph() [2/2]

template<typename ScalarType , typename triangulationType >

ttk::ftr::FTRGraph< ScalarType, triangulationType >::FTRGraph

Definition at line 27 of file FTRGraph_Template.h.

Member Function Documentation

◆ alloc()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::alloc

overrideprotectedvirtual

Implements ttk::ftr::Allocable.

Definition at line 283 of file FTRGraph_Template.h.

◆ build()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::build

build the Reeb Graph

Precondition: If this TTK package uses ttk::Triangulation for fast mesh traversals, the function preconditionTriangulation() must be called on this object prior to this function, in a clearly distinct pre-processing steps. An error will be returned otherwise.

Note: In such a case, it is recommended to exclude preconditionTriangulation() from any time performance measurement.

Definition at line 38 of file FTRGraph_Template.h.

◆ criticalSearch()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::criticalSearch

protected

Definition at line 188 of file FTRGraph_Template.h.

◆ dynGraph() [1/2]

template<typename ScalarType , typename triangulationType >

DynamicGraph< idVertex > & ttk::ftr::FTRGraph< ScalarType, triangulationType >::dynGraph ( const bool goUp )

inline

Definition at line 210 of file FTRGraph.h.

◆ dynGraph() [2/2]

template<typename ScalarType , typename triangulationType >

DynamicGraph< idVertex > & ttk::ftr::FTRGraph< ScalarType, triangulationType >::dynGraph ( const Propagation *const lp )

inline

Definition at line 202 of file FTRGraph.h.

◆ dynGraphOpposite()

template<typename ScalarType , typename triangulationType >

DynamicGraph< idVertex > & ttk::ftr::FTRGraph< ScalarType, triangulationType >::dynGraphOpposite ( const Propagation *const lp )

inline

Definition at line 218 of file FTRGraph.h.

◆ extractOutputGraph()

template<typename ScalarType , typename triangulationType >

Graph && ttk::ftr::FTRGraph< ScalarType, triangulationType >::extractOutputGraph ( )

inline

Definition at line 160 of file FTRGraph.h.

◆ init()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::init

overrideprotectedvirtual

Implements ttk::ftr::Allocable.

Definition at line 311 of file FTRGraph_Template.h.

◆ preconditionTriangulation()

template<typename ScalarType , typename triangulationType >

int ttk::ftr::FTRGraph< ScalarType, triangulationType >::preconditionTriangulation ( triangulationType * triangulation )

inline

Setup a (valid) triangulation object for this TTK base object.

Precondition: This function should be called prior to any usage of this TTK object, in a clearly distinct pre-processing step that involves no traversal or computation at all. An error will be returned otherwise.

Note: It is recommended to exclude this pre-processing function from any time performance measurement. Therefore, it is recommended to call this function ONLY in the pre-processing steps of your program. Note however, that your triangulation object must be valid when calling this function (i.e. you should have filled it at this point, see the setInput*() functions of ttk::Triangulation). See vtkFTRGraph for further examples.

Parameters

triangulation Pointer to a valid triangulation.

Returns: Returns 0 upon success, negative values otherwise.

See also: ttk::Triangulation

Definition at line 148 of file FTRGraph.h.

◆ printEdge()

template<typename ScalarType , typename triangulationType >

std::string ttk::ftr::FTRGraph< ScalarType, triangulationType >::printEdge	(	const idEdge	edgeId,
		const Propagation *const	localProp
	)		const

protected

Definition at line 21 of file FTRGraphPrint_Template.h.

◆ printGraph()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::printGraph ( const int verbosity ) const

protected

Definition at line 58 of file FTRGraphPrint_Template.h.

◆ printMesh()

template<typename ScalarType , typename triangulationType >

std::string ttk::ftr::FTRGraph< ScalarType, triangulationType >::printMesh

protected

Definition at line 9 of file FTRGraphPrint_Template.h.

◆ printTime()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::printTime	(	Timer &	timer,
		const std::string &	msg
	)		const

protected

Definition at line 64 of file FTRGraphPrint_Template.h.

◆ printTriangle()

template<typename ScalarType , typename triangulationType >

std::string ttk::ftr::FTRGraph< ScalarType, triangulationType >::printTriangle	(	const idCell	cellId,
		const Propagation *const	localProp
	)		const

protected

Definition at line 34 of file FTRGraphPrint_Template.h.

◆ setDebugLevel()

template<typename ScalarType , typename triangulationType >

int ttk::ftr::FTRGraph< ScalarType, triangulationType >::setDebugLevel ( const int & lvl )

inlineoverridevirtual

Control the verbosity of the base code.

Reimplemented from ttk::Debug.

Definition at line 177 of file FTRGraph.h.

◆ setParams()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::setParams ( const Params & p )

inline

Definition at line 182 of file FTRGraph.h.

◆ setScalars()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::setScalars ( const void * scalars )

inline

Scalar field used to compute the Reeb Graph.

Definition at line 188 of file FTRGraph.h.

◆ setThreadNumber()

template<typename ScalarType , typename triangulationType >

int ttk::ftr::FTRGraph< ScalarType, triangulationType >::setThreadNumber ( const int nb )

inlineoverridevirtual

The number of threads to be used during the computation of the reeb graph

Reimplemented from ttk::BaseClass.

Definition at line 169 of file FTRGraph.h.

◆ setVertexSoSoffsets()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::setVertexSoSoffsets ( SimplexId * sos )

inline

When several points have the same scalar value, we use simulation of simplicity to distinguish between them in a morse discret geometry compliant way. This is explained in the TTK report. Set the array to use here

Definition at line 198 of file FTRGraph.h.

◆ sweepFrowSeeds()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::sweepFrowSeeds

protected

Launch the sweep algorithm, but adapted to growth locally from each seed (min and/or max) See: grwothFromSeed.

Definition at line 242 of file FTRGraph_Template.h.

◆ sweepSequential()

template<typename ScalarType , typename triangulationType >

void ttk::ftr::FTRGraph< ScalarType, triangulationType >::sweepSequential

protected

Definition at line 278 of file FTRGraph_Template.h.

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/ttk-tierny/core/base/ftrGraph/FTRGraph.h
/home/julien/Pro/git/github/ttk-tierny/core/base/ftrGraph/FTRGraph_Template.h
/home/julien/Pro/git/github/ttk-tierny/core/base/ftrGraph/FTRGraphPrint_Template.h
/home/julien/Pro/git/github/ttk-tierny/core/base/ftrGraph/FTRGraphPrivate_Template.h

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ FTRGraph() [1/2]

◆ FTRGraph() [2/2]

Member Function Documentation

◆ alloc()

◆ build()

◆ criticalSearch()

◆ dynGraph() [1/2]

◆ dynGraph() [2/2]

◆ dynGraphOpposite()

◆ extractOutputGraph()

◆ init()

◆ preconditionTriangulation()

◆ printEdge()

◆ printGraph()

◆ printMesh()

◆ printTime()

◆ printTriangle()

◆ setDebugLevel()

◆ setParams()

◆ setScalars()

◆ setThreadNumber()

◆ setVertexSoSoffsets()

◆ sweepFrowSeeds()

◆ sweepSequential()