TTK processing package for progressive Topological Data Analysis. More...

#include <ApproximateTopology.h>

Inheritance diagram for ttk::ApproximateTopology:

Public Member Functions
	ApproximateTopology ()

void	setEpsilon (double data)

void	setDelta (double data)

template<typename scalarType >
int	computeApproximatePD (std::vector< PersistencePair > &CTDiagram, const scalarType scalars, scalarType const fakeScalars, SimplexId const outputOffsets, int const outputMonotonyOffsets)

template<typename scalarType >
int	executeApproximateTopology (const scalarType scalars, scalarType fakeScalars, SimplexId outputOffsets, int outputMonotonyOffsets)

template<typename scalarType , typename offsetType >
void	initGlobalPolarity (std::vector< polarity > &isNew, std::vector< std::vector< std::pair< polarity, polarity > > > &vertexLinkPolarity, std::vector< polarity > &toProcess, const scalarType fakeScalars, const offsetType const offsets, const int *const monotonyOffsets) const

template<typename scalarType , typename offsetType >
void	updatePropagation (std::vector< polarity > &toPropagateMin, std::vector< polarity > &toPropagateMax, std::vector< std::vector< SimplexId > > &vertexRepresentativesMin, std::vector< std::vector< SimplexId > > &vertexRepresentativesMax, std::vector< std::vector< SimplexId > > &saddleCCMin, std::vector< std::vector< SimplexId > > &saddleCCMax, std::vector< Lock > &vertLockMin, std::vector< Lock > &vertLockMax, std::vector< polarity > &isUpdatedMin, std::vector< polarity > &isUpdatedMax, const scalarType fakeScalars, const offsetType const offsetField, const int *const monotonyOffsets)

template<typename scalarType , typename offsetType >
void	buildVertexLinkPolarityApproximate (const SimplexId vertexId, std::vector< std::pair< polarity, polarity > > &vlp, const scalarType fakeScalars, const offsetType const offsetField, const int *const monotonyOffsets) const

template<typename ScalarType , typename OffsetType >
void	sortTripletsApproximate (std::vector< triplet > &triplets, const ScalarType const scalars, const ScalarType const fakeScalars, const OffsetType const offsets, const int const monotonyOffsets, const bool splitTree) const

template<typename scalarType , typename offsetType >
void	getCriticalTypeApproximate (const SimplexId &vertexId, std::vector< std::pair< polarity, polarity > > &vlp, uint8_t &vertexLink, DynamicTree &link, VLBoundaryType &vlbt, const scalarType fakeScalars, const offsetType const offsets, const int *const monotonyOffsets) const

template<typename ScalarType , typename offsetType >
void	computeCriticalPoints (std::vector< std::vector< std::pair< polarity, polarity > > > &vertexLinkPolarity, std::vector< polarity > &toPropagateMin, std::vector< polarity > &toPropagateMax, std::vector< polarity > &toProcess, std::vector< DynamicTree > &link, std::vector< uint8_t > &vertexLink, VLBoundaryType &vertexLinkByBoundaryType, std::vector< std::vector< SimplexId > > &saddleCCMin, std::vector< std::vector< SimplexId > > &saddleCCMax, ScalarType fakeScalars, const offsetType const offsets, int *monotonyOffsets)

template<typename scalarType , typename offsetType >
ttk::SimplexId	propagateFromSaddles (const SimplexId vertexId, std::vector< Lock > &vertLock, std::vector< polarity > &toPropagate, std::vector< std::vector< SimplexId > > &vertexRepresentatives, std::vector< std::vector< SimplexId > > &saddleCC, std::vector< polarity > &isUpdated, std::vector< SimplexId > &globalExtremum, const bool splitTree, const scalarType fakeScalars, const offsetType const offsetField, const int *const monotonyOffsets) const

template<typename ScalarType , typename offsetType >
void	computePersistencePairsFromSaddles (std::vector< PersistencePair > &CTDiagram, const ScalarType const fakeScalars, const offsetType const offsets, const int *const monotonyOffsets, std::vector< std::vector< SimplexId > > &vertexRepresentativesMin, std::vector< std::vector< SimplexId > > &vertexRepresentativesMax, const std::vector< polarity > &toPropagateMin, const std::vector< polarity > &toPropagateMax) const

template<typename scalarType , typename offsetType >
void	sortVertices (const SimplexId vertexNumber, std::vector< SimplexId > &sortedVertices, SimplexId vertsOrder, const scalarType const fakeScalars, const offsetType const offsetField, const int const monotonyOffsets)

template<typename scalarType >
int	sortPersistenceDiagramApproximate (std::vector< PersistencePair > &diagram, scalarType fakeScalars, const SimplexId const offsets, int *monotonyOffsets) const

template<typename scalarType >
int	executeApproximateTopology (const scalarType ttkNotUsed(scalars), scalarType fakeScalars, SimplexId outputOffsets, int outputMonotonyOffsets)

template<typename ScalarType , typename OffsetType >
void	computePersistencePairsFromSaddles (std::vector< PersistencePair > &CTDiagram, const ScalarType const fakeScalars, const OffsetType const offsets, const int *const monotonyOffsets, std::vector< std::vector< SimplexId > > &vertexRepresentativesMin, std::vector< std::vector< SimplexId > > &vertexRepresentativesMax, const std::vector< polarity > &toPropagateMin, const std::vector< polarity > &toPropagateMax) const

Public Member Functions inherited from ttk::MultiresTopology
	MultiresTopology ()

void	setupTriangulation (ImplicitTriangulation *const data)

virtual void	setStartingDecimationLevel (int data)

virtual void	setStoppingDecimationLevel (int data)

virtual void	setPreallocateMemory (const bool b)

int	getStoppingDecimationLevel ()

void	setStartingResolutionLevel (int rl)

void	setStoppingResolutionLevel (int rl)

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Protected Types
using	VLBoundaryType = std::array< std::vector< std::pair< SimplexId, SimplexId > >, nLink_ >

Protected Types inherited from ttk::MultiresTopology
using	VLBoundaryType = std::array< std::vector< std::pair< SimplexId, SimplexId > >, nLink_ >

Protected Member Functions
void	initCriticalPoints (std::vector< polarity > &isNew, std::vector< std::vector< std::pair< polarity, polarity > > > &vertexLinkPolarity, std::vector< polarity > &toProcess, std::vector< DynamicTree > &link, std::vector< uint8_t > &vertexLink, VLBoundaryType &vertexLinkByBoundaryType, std::vector< char > &vertexTypes, const SimplexId *const offsets) const

void	initSaddleSeeds (std::vector< polarity > &isNew, std::vector< std::vector< std::pair< polarity, polarity > > > &vertexLinkPolarity, std::vector< polarity > &toPropagateMin, std::vector< polarity > &toPropagateMax, std::vector< polarity > &toProcess, std::vector< DynamicTree > &link, std::vector< uint8_t > &vertexLink, VLBoundaryType &vertexLinkByBoundaryType, std::vector< std::vector< SimplexId > > &saddleCCMin, std::vector< std::vector< SimplexId > > &saddleCCMax, const SimplexId *const offsets) const

template<typename scalarType , typename offsetType >
void	updatePropagation (std::vector< polarity > &toPropagateMin, std::vector< polarity > &toPropagateMax, std::vector< std::vector< SimplexId > > &vertexRepresentativesMin, std::vector< std::vector< SimplexId > > &vertexRepresentativesMax, std::vector< std::vector< SimplexId > > &saddleCCMin, std::vector< std::vector< SimplexId > > &saddleCCMax, std::vector< Lock > &vertLockMin, std::vector< Lock > &vertLockMax, std::vector< polarity > &isUpdatedMin, std::vector< polarity > &isUpdatedMax, const scalarType fakeScalars, const offsetType const offsets, const int *const monotonyOffsets) const

template<typename scalarType , typename offsetType >
void	buildVertexLinkPolarity (const SimplexId vertexId, std::vector< std::pair< polarity, polarity > > &vlp, const scalarType fakeScalars, const offsetType const offsets, const int *const monotonyOffsets) const

template<typename ScalarType , typename OffsetType >
void	sortTriplets (std::vector< triplet > &triplets, const ScalarType const fakeScalars, const OffsetType const offsets, const int *const monotonyOffsets, const bool splitTree) const

template<typename scalarType , typename offsetType >
void	tripletsToPersistencePairs (std::vector< PersistencePair > &pairs, std::vector< std::vector< SimplexId > > &vertexRepresentatives, std::vector< triplet > &triplets, const scalarType const fakeScalars, const offsetType const offsets, const int *const monotonyOffsets, const bool splitTree) const

template<typename scalarType , typename offsetType >
int	getMonotonyChangeByOldPointCPApproximate (const SimplexId vertexId, double eps, const std::vector< polarity > &isNew, std::vector< polarity > &toProcess, std::vector< polarity > &toReprocess, std::vector< std::pair< polarity, polarity > > &vlp, scalarType fakeScalars, const offsetType const offsets, int *monotonyOffsets) const

template<typename ScalarType , typename offsetType >
int	updateGlobalPolarity (double eps, std::vector< polarity > &isNew, std::vector< std::vector< std::pair< polarity, polarity > > > &vertexLinkPolarity, std::vector< polarity > &toProcess, std::vector< polarity > &toReprocess, ScalarType fakeScalars, const offsetType const offsets, int *monotonyOffsets) const

ttk::SimplexId	propagateFromSaddles (const SimplexId vertexId, std::vector< Lock > &vertLock, std::vector< polarity > &toPropagate, std::vector< std::vector< SimplexId > > &vertexRepresentatives, std::vector< std::vector< SimplexId > > &saddleCC, std::vector< polarity > &isUpdated, std::vector< SimplexId > &globalExtremum, const SimplexId *const offsets, const bool splitTree) const

void	computePersistencePairsFromSaddles (std::vector< PersistencePair > &CTDiagram, const SimplexId *const offsets, std::vector< std::vector< SimplexId > > &vertexRepresentativesMin, std::vector< std::vector< SimplexId > > &vertexRepresentativesMax, const std::vector< polarity > &toPropagateMin, const std::vector< polarity > &toPropagateMax) const

template<typename scalarType , typename offsetType >
bool	printPolarity (std::vector< polarity > &isNew, const SimplexId vertexId, std::vector< std::vector< std::pair< polarity, polarity > > > &vertexLinkPolarity, const scalarType scalars, const scalarType fakeScalars, const offsetType const offsets, const int const monotonyOffsets, bool verbose=false)

Protected Member Functions inherited from ttk::MultiresTopology
void	buildVertexLinkByBoundary (const SimplexId vertexId, VLBoundaryType &vlbt) const

char	getCriticalTypeFromLink (const std::vector< std::pair< polarity, polarity > > &vlp, DynamicTree &link) const

void	getValencesFromLink (const SimplexId vertexId, const std::vector< std::pair< polarity, polarity > > &vlp, DynamicTree &link, std::vector< polarity > &toPropagateMin, std::vector< polarity > &toPropagateMax, std::vector< std::vector< SimplexId > > &saddleCCMin, std::vector< std::vector< SimplexId > > &saddleCCMax) const

void	getTripletsFromSaddles (const SimplexId vertexId, std::vector< triplet > &triplets, const std::vector< std::vector< SimplexId > > &vertexReps) const

void	updateLinkPolarityPonctual (std::vector< std::pair< polarity, polarity > > &vlp) const

std::string	resolutionInfoString ()

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Attributes
double	epsilon_ {}

double	delta_ {}

Protected Attributes inherited from ttk::MultiresTopology
ImplicitTriangulation *	triangulation_ {}

MultiresTriangulation	multiresTriangulation_ {}

SimplexId	globalMax_ {}

SimplexId	globalMin_ {}

int	decimationLevel_ {}

int	startingDecimationLevel_ {}

int	stoppingDecimationLevel_ {}

bool	preallocateMemory_ {true}

std::vector< PersistencePair >	CTDiagram_ {}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Static Protected Attributes
static const size_t	nLink_ = 27

Static Protected Attributes inherited from ttk::MultiresTopology
static const size_t	nLink_ = 27

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK processing package for progressive Topological Data Analysis.

Author: Jules Vidal jules.nosp@m..vid.nosp@m.al@li.nosp@m.p6.f.nosp@m.r

Date: 2021.

This package introduces an approximation algorithm for the computation of the extremum-saddle persistence diagram of a scalar field. The approximation comes with a user-controlled error on the Bottleneck distance to the exact diagram.

Related publication
"Fast Approximation of Persistence Diagrams with Guarantees"
Jules Vidal, Julien Tierny
IEEE Symposium on Large Data Visualization and Analysis (LDAV), 2021

See also: PersistenceDiagram

Definition at line 36 of file ApproximateTopology.h.

Member Typedef Documentation

◆ VLBoundaryType

using ttk::ApproximateTopology::VLBoundaryType = std::array<std::vector<std::pair<SimplexId, SimplexId> >, nLink_>

protected

Definition at line 172 of file ApproximateTopology.h.

Constructor & Destructor Documentation

◆ ApproximateTopology()

ttk::ApproximateTopology::ApproximateTopology ( )

inline

Definition at line 39 of file ApproximateTopology.h.

Member Function Documentation

◆ buildVertexLinkPolarity()

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::buildVertexLinkPolarity	(	const SimplexId	vertexId,
		std::vector< std::pair< polarity, polarity > > &	vlp,
		const scalarType *	fakeScalars,
		const offsetType *const	offsets,
		const int *const	monotonyOffsets
	)		const

protected

◆ buildVertexLinkPolarityApproximate()

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::buildVertexLinkPolarityApproximate	(	const SimplexId	vertexId,
		std::vector< std::pair< polarity, polarity > > &	vlp,
		const scalarType *	fakeScalars,
		const offsetType *const	offsetField,
		const int *const	monotonyOffsets
	)		const

Definition at line 1027 of file ApproximateTopology.h.

◆ computeApproximatePD()

template<typename scalarType >

int ttk::ApproximateTopology::computeApproximatePD	(	std::vector< PersistencePair > &	CTDiagram,
		const scalarType *	scalars,
		scalarType *const	fakeScalars,
		SimplexId *const	outputOffsets,
		int *const	outputMonotonyOffsets
	)

Definition at line 1314 of file ApproximateTopology.h.

◆ computeCriticalPoints()

template<typename ScalarType , typename offsetType >

void ttk::ApproximateTopology::computeCriticalPoints	(	std::vector< std::vector< std::pair< polarity, polarity > > > &	vertexLinkPolarity,
		std::vector< polarity > &	toPropagateMin,
		std::vector< polarity > &	toPropagateMax,
		std::vector< polarity > &	toProcess,
		std::vector< DynamicTree > &	link,
		std::vector< uint8_t > &	vertexLink,
		VLBoundaryType &	vertexLinkByBoundaryType,
		std::vector< std::vector< SimplexId > > &	saddleCCMin,
		std::vector< std::vector< SimplexId > > &	saddleCCMax,
		ScalarType *	fakeScalars,
		const offsetType *const	offsets,
		int *	monotonyOffsets
	)

Definition at line 1250 of file ApproximateTopology.h.

◆ computePersistencePairsFromSaddles() [1/3]

template<typename ScalarType , typename offsetType >

void ttk::ApproximateTopology::computePersistencePairsFromSaddles	(	std::vector< PersistencePair > &	CTDiagram,
		const ScalarType *const	fakeScalars,
		const offsetType *const	offsets,
		const int *const	monotonyOffsets,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMin,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMax,
		const std::vector< polarity > &	toPropagateMin,
		const std::vector< polarity > &	toPropagateMax
	)		const

◆ computePersistencePairsFromSaddles() [2/3]

template<typename ScalarType , typename OffsetType >

void ttk::ApproximateTopology::computePersistencePairsFromSaddles	(	std::vector< PersistencePair > &	CTDiagram,
		const ScalarType *const	fakeScalars,
		const OffsetType *const	offsets,
		const int *const	monotonyOffsets,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMin,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMax,
		const std::vector< polarity > &	toPropagateMin,
		const std::vector< polarity > &	toPropagateMax
	)		const

Definition at line 460 of file ApproximateTopology.h.

◆ computePersistencePairsFromSaddles() [3/3]

void ttk::ApproximateTopology::computePersistencePairsFromSaddles	(	std::vector< PersistencePair > &	CTDiagram,
		const SimplexId *const	offsets,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMin,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMax,
		const std::vector< polarity > &	toPropagateMin,
		const std::vector< polarity > &	toPropagateMax
	)		const

protected

◆ executeApproximateTopology() [1/2]

template<typename scalarType >

int ttk::ApproximateTopology::executeApproximateTopology	(	const scalarType *	scalars,
		scalarType *	fakeScalars,
		SimplexId *	outputOffsets,
		int *	outputMonotonyOffsets
	)

◆ executeApproximateTopology() [2/2]

template<typename scalarType >

int ttk::ApproximateTopology::executeApproximateTopology	(	const scalarType *	ttkNotUsedscalars,
		scalarType *	fakeScalars,
		SimplexId *	outputOffsets,
		int *	outputMonotonyOffsets
	)

Definition at line 300 of file ApproximateTopology.h.

◆ getCriticalTypeApproximate()

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::getCriticalTypeApproximate	(	const SimplexId &	vertexId,
		std::vector< std::pair< polarity, polarity > > &	vlp,
		uint8_t &	vertexLink,
		DynamicTree &	link,
		VLBoundaryType &	vlbt,
		const scalarType *	fakeScalars,
		const offsetType *const	offsets,
		const int *const	monotonyOffsets
	)		const

Definition at line 1135 of file ApproximateTopology.h.

◆ getMonotonyChangeByOldPointCPApproximate()

template<typename scalarType , typename offsetType >

int ttk::ApproximateTopology::getMonotonyChangeByOldPointCPApproximate	(	const SimplexId	vertexId,
		double	eps,
		const std::vector< polarity > &	isNew,
		std::vector< polarity > &	toProcess,
		std::vector< polarity > &	toReprocess,
		std::vector< std::pair< polarity, polarity > > &	vlp,
		scalarType *	fakeScalars,
		const offsetType *const	offsets,
		int *	monotonyOffsets
	)		const

protected

Definition at line 667 of file ApproximateTopology.h.

◆ initCriticalPoints()

void ttk::ApproximateTopology::initCriticalPoints	(	std::vector< polarity > &	isNew,
		std::vector< std::vector< std::pair< polarity, polarity > > > &	vertexLinkPolarity,
		std::vector< polarity > &	toProcess,
		std::vector< DynamicTree > &	link,
		std::vector< uint8_t > &	vertexLink,
		VLBoundaryType &	vertexLinkByBoundaryType,
		std::vector< char > &	vertexTypes,
		const SimplexId *const	offsets
	)		const

protected

◆ initGlobalPolarity()

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::initGlobalPolarity	(	std::vector< polarity > &	isNew,
		std::vector< std::vector< std::pair< polarity, polarity > > > &	vertexLinkPolarity,
		std::vector< polarity > &	toProcess,
		const scalarType *	fakeScalars,
		const offsetType *const	offsets,
		const int *const	monotonyOffsets
	)		const

Definition at line 1171 of file ApproximateTopology.h.

◆ initSaddleSeeds()

void ttk::ApproximateTopology::initSaddleSeeds	(	std::vector< polarity > &	isNew,
		std::vector< std::vector< std::pair< polarity, polarity > > > &	vertexLinkPolarity,
		std::vector< polarity > &	toPropagateMin,
		std::vector< polarity > &	toPropagateMax,
		std::vector< polarity > &	toProcess,
		std::vector< DynamicTree > &	link,
		std::vector< uint8_t > &	vertexLink,
		VLBoundaryType &	vertexLinkByBoundaryType,
		std::vector< std::vector< SimplexId > > &	saddleCCMin,
		std::vector< std::vector< SimplexId > > &	saddleCCMax,
		const SimplexId *const	offsets
	)		const

protected

◆ printPolarity()

template<typename scalarType , typename offsetType >

bool ttk::ApproximateTopology::printPolarity	(	std::vector< polarity > &	isNew,
		const SimplexId	vertexId,
		std::vector< std::vector< std::pair< polarity, polarity > > > &	vertexLinkPolarity,
		const scalarType *	scalars,
		const scalarType *	fakeScalars,
		const offsetType *const	offsets,
		const int *const	monotonyOffsets,
		bool	verbose = `false`
	)

protected

Definition at line 1056 of file ApproximateTopology.h.

◆ propagateFromSaddles() [1/2]

template<typename scalarType , typename offsetType >

ttk::SimplexId ttk::ApproximateTopology::propagateFromSaddles	(	const SimplexId	vertexId,
		std::vector< Lock > &	vertLock,
		std::vector< polarity > &	toPropagate,
		std::vector< std::vector< SimplexId > > &	vertexRepresentatives,
		std::vector< std::vector< SimplexId > > &	saddleCC,
		std::vector< polarity > &	isUpdated,
		std::vector< SimplexId > &	globalExtremum,
		const bool	splitTree,
		const scalarType *	fakeScalars,
		const offsetType *const	offsetField,
		const int *const	monotonyOffsets
	)		const

Definition at line 788 of file ApproximateTopology.h.

◆ propagateFromSaddles() [2/2]

ttk::SimplexId ttk::ApproximateTopology::propagateFromSaddles	(	const SimplexId	vertexId,
		std::vector< Lock > &	vertLock,
		std::vector< polarity > &	toPropagate,
		std::vector< std::vector< SimplexId > > &	vertexRepresentatives,
		std::vector< std::vector< SimplexId > > &	saddleCC,
		std::vector< polarity > &	isUpdated,
		std::vector< SimplexId > &	globalExtremum,
		const SimplexId *const	offsets,
		const bool	splitTree
	)		const

protected

◆ setDelta()

void ttk::ApproximateTopology::setDelta ( double data )

inline

Definition at line 45 of file ApproximateTopology.h.

◆ setEpsilon()

void ttk::ApproximateTopology::setEpsilon ( double data )

inline

Definition at line 42 of file ApproximateTopology.h.

◆ sortPersistenceDiagramApproximate()

template<typename scalarType >

int ttk::ApproximateTopology::sortPersistenceDiagramApproximate	(	std::vector< PersistencePair > &	diagram,
		scalarType *	fakeScalars,
		const SimplexId *const	offsets,
		int *	monotonyOffsets
	)		const

Definition at line 1291 of file ApproximateTopology.h.

◆ sortTriplets()

template<typename ScalarType , typename OffsetType >

void ttk::ApproximateTopology::sortTriplets	(	std::vector< triplet > &	triplets,
		const ScalarType *const	fakeScalars,
		const OffsetType *const	offsets,
		const int *const	monotonyOffsets,
		const bool	splitTree
	)		const

protected

Definition at line 520 of file ApproximateTopology.h.

◆ sortTripletsApproximate()

template<typename ScalarType , typename OffsetType >

void ttk::ApproximateTopology::sortTripletsApproximate	(	std::vector< triplet > &	triplets,
		const ScalarType *const	scalars,
		const ScalarType *const	fakeScalars,
		const OffsetType *const	offsets,
		const int *const	monotonyOffsets,
		const bool	splitTree
	)		const

◆ sortVertices()

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::sortVertices	(	const SimplexId	vertexNumber,
		std::vector< SimplexId > &	sortedVertices,
		SimplexId *	vertsOrder,
		const scalarType *const	fakeScalars,
		const offsetType *const	offsetField,
		const int *const	monotonyOffsets
	)

Definition at line 635 of file ApproximateTopology.h.

◆ tripletsToPersistencePairs()

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::tripletsToPersistencePairs	(	std::vector< PersistencePair > &	pairs,
		std::vector< std::vector< SimplexId > > &	vertexRepresentatives,
		std::vector< triplet > &	triplets,
		const scalarType *const	fakeScalars,
		const offsetType *const	offsets,
		const int *const	monotonyOffsets,
		const bool	splitTree
	)		const

protected

Definition at line 552 of file ApproximateTopology.h.

◆ updateGlobalPolarity()

template<typename ScalarType , typename offsetType >

int ttk::ApproximateTopology::updateGlobalPolarity	(	double	eps,
		std::vector< polarity > &	isNew,
		std::vector< std::vector< std::pair< polarity, polarity > > > &	vertexLinkPolarity,
		std::vector< polarity > &	toProcess,
		std::vector< polarity > &	toReprocess,
		ScalarType *	fakeScalars,
		const offsetType *const	offsets,
		int *	monotonyOffsets
	)		const

protected

Definition at line 1198 of file ApproximateTopology.h.

◆ updatePropagation() [1/2]

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::updatePropagation	(	std::vector< polarity > &	toPropagateMin,
		std::vector< polarity > &	toPropagateMax,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMin,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMax,
		std::vector< std::vector< SimplexId > > &	saddleCCMin,
		std::vector< std::vector< SimplexId > > &	saddleCCMax,
		std::vector< Lock > &	vertLockMin,
		std::vector< Lock > &	vertLockMax,
		std::vector< polarity > &	isUpdatedMin,
		std::vector< polarity > &	isUpdatedMax,
		const scalarType *	fakeScalars,
		const offsetType *const	offsetField,
		const int *const	monotonyOffsets
	)

Definition at line 921 of file ApproximateTopology.h.

◆ updatePropagation() [2/2]

template<typename scalarType , typename offsetType >

void ttk::ApproximateTopology::updatePropagation	(	std::vector< polarity > &	toPropagateMin,
		std::vector< polarity > &	toPropagateMax,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMin,
		std::vector< std::vector< SimplexId > > &	vertexRepresentativesMax,
		std::vector< std::vector< SimplexId > > &	saddleCCMin,
		std::vector< std::vector< SimplexId > > &	saddleCCMax,
		std::vector< Lock > &	vertLockMin,
		std::vector< Lock > &	vertLockMax,
		std::vector< polarity > &	isUpdatedMin,
		std::vector< polarity > &	isUpdatedMax,
		const scalarType *	fakeScalars,
		const offsetType *const	offsets,
		const int *const	monotonyOffsets
	)		const

protected

Member Data Documentation

◆ delta_

double ttk::ApproximateTopology::delta_ {}

protected

Definition at line 295 of file ApproximateTopology.h.

◆ epsilon_

double ttk::ApproximateTopology::epsilon_ {}

protected

Definition at line 294 of file ApproximateTopology.h.

◆ nLink_

const size_t ttk::ApproximateTopology::nLink_ = 27

staticprotected

Definition at line 171 of file ApproximateTopology.h.

The documentation for this class was generated from the following file:

/home/julien/Pro/git/github/ttk-tierny/core/base/approximateTopology/ApproximateTopology.h

Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

Member Typedef Documentation

◆ VLBoundaryType

Constructor & Destructor Documentation

◆ ApproximateTopology()

Member Function Documentation

◆ buildVertexLinkPolarity()

◆ buildVertexLinkPolarityApproximate()

◆ computeApproximatePD()

◆ computeCriticalPoints()

◆ computePersistencePairsFromSaddles() [1/3]

◆ computePersistencePairsFromSaddles() [2/3]

◆ computePersistencePairsFromSaddles() [3/3]

◆ executeApproximateTopology() [1/2]

◆ executeApproximateTopology() [2/2]

◆ getCriticalTypeApproximate()

◆ getMonotonyChangeByOldPointCPApproximate()

◆ initCriticalPoints()

◆ initGlobalPolarity()

◆ initSaddleSeeds()

◆ printPolarity()

◆ propagateFromSaddles() [1/2]

◆ propagateFromSaddles() [2/2]

◆ setDelta()

◆ setEpsilon()

◆ sortPersistenceDiagramApproximate()

◆ sortTriplets()

◆ sortTripletsApproximate()

◆ sortVertices()

◆ tripletsToPersistencePairs()

◆ updateGlobalPolarity()

◆ updatePropagation() [1/2]

◆ updatePropagation() [2/2]

Member Data Documentation

◆ delta_

◆ epsilon_

◆ nLink_