TTK VTK-filter that wraps the ttk::MergeTreeDistanceMatrix module. More...

#include <ttkMergeTreeDistanceMatrix.h>

Inheritance diagram for ttkMergeTreeDistanceMatrix:

Public Types
typedef ttkAlgorithm	Superclass

Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm	Superclass

Public Member Functions
void	SetEpsilon1UseFarthestSaddle (bool epsilon1UseFarthestSaddle)

bool	GetEpsilon1UseFarthestSaddle ()

void	SetEpsilonTree1 (double epsilonTree1)

double	SetEpsilonTree1 ()

void	SetEpsilon2Tree1 (double epsilon2Tree1)

double	SetEpsilon2Tree1 ()

void	SetEpsilon3Tree1 (double epsilon3Tree1)

double	SetEpsilon3Tree1 ()

void	SetPersistenceThreshold (double persistenceThreshold)

double	SetPersistenceThreshold ()

void	SetDeleteMultiPersPairs (bool doDelete)

bool	SetDeleteMultiPersPairs ()

void	SetBranchMetric (int m)

void	SetPathMetric (int m)

void	SetBackend (int newBackend)

virtual int	GetBackend ()

void	SetAssignmentSolver (int assignmentSolver)

int	GetAssignmentSolver ()

void	SetBranchDecomposition (bool branchDecomposition)

int	GetBranchDecomposition ()

void	SetNormalizedWasserstein (bool normalizedWasserstein)

int	GetNormalizedWasserstein ()

void	SetKeepSubtree (bool keepSubtree)

int	GetKeepSubtree ()

void	SetDistanceSquaredRoot (bool distanceSquaredRoot)

int	GetDistanceSquaredRoot ()

virtual void	SetUseFieldDataParameters (bool)

virtual bool	GetUseFieldDataParameters ()

virtual void	SetmixtureCoefficient_ (double)

virtual double	GetmixtureCoefficient_ ()

virtual const char *	GetClassName ()

virtual int	IsA (const char *type)

Public Member Functions inherited from ttkAlgorithm
void	UpdateThreadNumber ()

void	SetThreadNumber (int threadNumber)

void	SetUseAllCores (bool useAllCores)

void	SetDebugLevel (int debugLevel)

void	SetCompactTriangulationCacheSize (float cacheSize)

vtkDataArray *	GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)

vtkDataArray *	GetOrderArray (vtkDataSet const inputData, const int scalarArrayIdx, ttk::Triangulation triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)

vtkDataArray *	checkForGlobalAndComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray orderArray, ttk::Triangulation triangulation, const bool enforceOrderArrayIdx)

vtkDataArray *	ComputeOrderArray (vtkDataSet const inputData, vtkDataArray scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray oldOrderArray, ttk::Triangulation triangulation)

ttk::SimplexId *	GetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)

ttk::Triangulation *	GetTriangulation (vtkDataSet *dataSet)

int	ProcessRequest (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector) override

vtkDataSet *	GetOutput ()

vtkDataSet *	GetOutput (int)

void	SetInputData (vtkDataSet *)

void	SetInputData (int, vtkDataSet *)

void	AddInputData (vtkDataSet *)

void	AddInputData (int, vtkDataSet *)

template<typename inputType >
int	checkEmptyMPIInput (inputType *input)
	This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Static Public Member Functions
static ttkMergeTreeDistanceMatrix *	New ()

static int	IsTypeOf (const char *type)

static ttkMergeTreeDistanceMatrix *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static ttkAlgorithm *	SafeDownCast (vtkObject *o)

static std::string	GetOrderArrayName (vtkDataArray *const array)

static vtkInformationIntegerKey *	SAME_DATA_TYPE_AS_INPUT_PORT ()

Protected Member Functions
	ttkMergeTreeDistanceMatrix ()

	~ttkMergeTreeDistanceMatrix () override

int	FillInputPortInformation (int port, vtkInformation *info) override

int	FillOutputPortInformation (int port, vtkInformation *info) override

int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) override

template<class dataType >
int	run (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2)

Protected Member Functions inherited from ttkAlgorithm
	ttkAlgorithm ()

	~ttkAlgorithm () override

void	MPIGhostPipelinePreconditioning (vtkDataSet *input)

void	MPIPipelinePreconditioning (vtkDataSet input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation triangulation=nullptr)

bool	checkGlobalIdValidity (ttk::LongSimplexId globalIds, ttk::SimplexId simplexNumber, unsigned char ghost, int *rankArray)

int	GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)

void	MPITriangulationPreconditioning (ttk::Triangulation triangulation, vtkDataSet input)

virtual int	RequestDataObject (vtkInformation request, vtkInformationVector inputVectors, vtkInformationVector outputVector)

virtual int	RequestInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateTime (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateTimeDependentInformation (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestUpdateExtent (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestDataNotGenerated (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

virtual int	RequestData (vtkInformation ttkNotUsed(request), vtkInformationVector ttkNotUsed(inputVectors), vtkInformationVector ttkNotUsed(outputVector))

int	FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override

int	FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override

Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Protected Member Functions inherited from ttk::MergeTreeDistanceMatrix
	MergeTreeDistanceMatrix ()

	~MergeTreeDistanceMatrix () override=default

void	setBaseModule (int m)

void	setBranchMetric (int m)

void	setPathMetric (int m)

template<class dataType >
void	execute (std::vector< ftm::MergeTree< dataType > > &trees, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &distanceMatrix)

template<class dataType >
void	execute (std::vector< ftm::MergeTree< dataType > > &ftmtrees, std::vector< std::vector< double > > &distanceMatrix)

template<class dataType >
void	executePara (std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &distanceMatrix, bool isFirstInput=true)

template<class dataType >
void	executeParaImpl (std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &distanceMatrix, bool isFirstInput=true)

Protected Member Functions inherited from ttk::MergeTreeBase
	MergeTreeBase ()

void	setAssignmentSolver (int assignmentSolver)

void	setEpsilon1UseFarthestSaddle (bool b)

void	setEpsilonTree1 (double epsilon)

void	setEpsilonTree2 (double epsilon)

void	setEpsilon2Tree1 (double epsilon)

void	setEpsilon2Tree2 (double epsilon)

void	setEpsilon3Tree1 (double epsilon)

void	setEpsilon3Tree2 (double epsilon)

void	setPersistenceThreshold (double pt)

void	setParallelize (bool para)

void	setNodePerTask (int npt)

void	setBranchDecomposition (bool useBD)

void	setNormalizedWasserstein (bool normalizedWasserstein)

void	setKeepSubtree (bool keepSubtree)

void	setNonMatchingWeight (double weight)

void	setBarycenterMergeTree (bool imt)

void	setDistanceSquaredRoot (bool distanceSquaredRoot)

void	setUseMinMaxPair (bool useMinMaxPair)

void	setDeleteMultiPersPairs (bool deleteMultiPersPairsT)

void	setCleanTree (bool clean)

void	setIsPersistenceDiagram (bool isPD)

std::vector< std::vector< int > >	getTreesNodeCorr ()

double	mixDistancesMinMaxPairWeight (bool isFirstInput)

double	mixDistancesWeight (bool isFirstInput)

template<class dataType >
double	mixDistances (dataType distance1, dataType distance2)

template<class dataType >
void	mixDistancesMatrix (std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)

template<class dataType >
void	mergeSaddle (ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)

template<class dataType >
void	persistenceMerging (ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)

template<class dataType >
void	keepMostImportantPairs (ftm::FTMTree_MT *tree, int n, bool useBD)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT)

template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree)

template<class dataType >
void	verifyOrigins (ftm::FTMTree_MT *tree)

template<class dataType >
void	preprocessTree (ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)

template<class dataType >
ftm::FTMTree_MT *	computeBranchDecomposition (ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)

template<class dataType >
void	dontUseMinMaxPair (ftm::FTMTree_MT *tree)

void	verifyPairsTree (ftm::FTMTree_MT *tree)

template<class dataType >
void	deleteMultiPersPairs (ftm::FTMTree_MT *tree, bool useBD)

template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)

template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)

void	reverseNodeCorr (ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)

template<class dataType >
void	mtFlattening (ftm::MergeTree< dataType > &mt)

template<class dataType >
void	mtsFlattening (std::vector< ftm::MergeTree< dataType > > &mts)

double	getSizeLimitMetric (std::vector< ftm::FTMTree_MT * > &trees)

template<class dataType >
void	copyMinMaxPair (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)

template<class dataType >
std::tuple< int, dataType >	fixMergedRootOrigin (ftm::FTMTree_MT *tree)

template<class dataType >
void	branchDecompositionToTree (ftm::FTMTree_MT *tree)

template<class dataType >
void	putBackMergedNodes (ftm::FTMTree_MT *tree)

template<class dataType >
void	postprocessingPipeline (ftm::FTMTree_MT *tree)

template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)

template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)

template<class dataType >
void	identifyRealMatching (ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)

template<class dataType >
dataType	computeDistance (dataType x1, dataType x2, dataType y1, dataType y2, double power=2)

template<class dataType >
dataType	deleteCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)

template<class dataType >
dataType	insertCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)

template<class dataType >
dataType	relabelCostOnly (ftm::FTMTree_MT tree1, ftm::idNode nodeId1, ftm::FTMTree_MT tree2, ftm::idNode nodeId2)

template<class dataType >
dataType	relabelCost (ftm::FTMTree_MT tree1, ftm::idNode nodeId1, ftm::FTMTree_MT tree2, ftm::idNode nodeId2)

void	getParamNames (std::vector< std::string > &paramNames)

double	getParamValueFromName (std::string &paramName)

void	setParamValueFromName (std::string &paramName, double value)

void	getTreesStats (std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)

void	printTreesStats (std::vector< ftm::FTMTree_MT * > &trees)

template<class dataType >
void	printTreesStats (std::vector< ftm::MergeTree< dataType > > &trees)

template<class dataType >
void	printTableVector (std::vector< std::vector< dataType > > &table)

template<class dataType >
void	printTable (dataType *table, int nRows, int nCols)

void	printMatching (std::vector< MatchingType > &matchings)

void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)

void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)

template<class dataType >
void	printPairs (std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)

template<class dataType >
void	printOutputMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT tree1, ftm::FTMTree_MT tree2, bool computeCosts=true)

Additional Inherited Members
Protected Attributes inherited from ttkAlgorithm
float	CompactTriangulationCacheSize {0.2f}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Protected Attributes inherited from ttk::MergeTreeDistanceMatrix
int	baseModule_ = 0

int	branchMetric_ = 0

int	pathMetric_ = 0

Protected Attributes inherited from ttk::MergeTreeBase
int	assignmentSolverID_ = 0

bool	epsilon1UseFarthestSaddle_ = false

double	epsilonTree1_ = 0

double	epsilonTree2_ = 0

double	epsilon2Tree1_ = 100

double	epsilon2Tree2_ = 100

double	epsilon3Tree1_ = 100

double	epsilon3Tree2_ = 100

double	persistenceThreshold_ = 0

bool	barycenterMergeTree_ = false

bool	useMinMaxPair_ = true

bool	deleteMultiPersPairs_ = false

bool	branchDecomposition_ = true

int	wassersteinPower_ = 2

bool	normalizedWasserstein_ = true

bool	keepSubtree_ = false

double	nonMatchingWeight_ = 1.0

bool	distanceSquaredRoot_ = true

bool	useFullMerge_ = false

bool	isPersistenceDiagram_ = false

bool	convertToDiagram_ = false

double	mixtureCoefficient_ = 0.5

bool	useDoubleInput_ = false

bool	parallelize_ = true

int	nodePerTask_ = 32

bool	cleanTree_ = true

std::vector< std::vector< int > >	treesNodeCorr_

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK VTK-filter that wraps the ttk::MergeTreeDistanceMatrix module.

Author: Mathieu Pont mathi.nosp@m.eu.p.nosp@m.ont@l.nosp@m.ip6..nosp@m.fr

Date: 2021.

This VTK filter uses the ttk::MergeTreeDistanceMatrix module to compute the distance matrix of a group of merge trees.

Parameters

Input	vtkMultiBlockDataset
Output	vtkTable

This filter can be used as any other VTK filter (for instance, by using the sequence of calls SetInputData(), Update(), GetOutputDataObject()).

See the related ParaView example state files for usage examples within a VTK pipeline.

See also: ttk::MergeTreeDistanceMatrix; ttkAlgorithm

Online examples:

Definition at line 48 of file ttkMergeTreeDistanceMatrix.h.

Member Typedef Documentation

◆ Superclass

typedef ttkAlgorithm ttkMergeTreeDistanceMatrix::Superclass

Definition at line 198 of file ttkMergeTreeDistanceMatrix.h.

Constructor & Destructor Documentation

◆ ttkMergeTreeDistanceMatrix()

ttkMergeTreeDistanceMatrix::ttkMergeTreeDistanceMatrix ( )

protected

Implement the filter constructor and destructor (see cpp file)

Implement the filter constructor and destructor in the cpp file.

The constructor has to specify the number of input and output ports with the functions SetNumberOfInputPorts and SetNumberOfOutputPorts, respectively. It should also set default values for all filter parameters.

The destructor is usually empty unless you want to manage memory explicitly, by for example allocating memory on the heap that needs to be freed when the filter is destroyed.

Definition at line 32 of file ttkMergeTreeDistanceMatrix.cpp.

◆ ~ttkMergeTreeDistanceMatrix()

ttkMergeTreeDistanceMatrix::~ttkMergeTreeDistanceMatrix ( )

overrideprotecteddefault

Member Function Documentation

◆ FillInputPortInformation()

int ttkMergeTreeDistanceMatrix::FillInputPortInformation	(	int	port,
		vtkInformation *	info
	)

overrideprotected

Specify the input data type of each input port (see cpp file)

Specify the required input data type of each input port

This method specifies the required input object data types of the filter by adding the vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE() key to the port information.

Definition at line 46 of file ttkMergeTreeDistanceMatrix.cpp.

◆ FillOutputPortInformation()

int ttkMergeTreeDistanceMatrix::FillOutputPortInformation	(	int	port,
		vtkInformation *	info
	)

overrideprotected

Specify the data object type of each output port (see cpp file)

Specify the data object type of each output port

This method specifies in the port information object the data type of the corresponding output objects. It is possible to either explicitly specify a type by adding a vtkDataObject::DATA_TYPE_NAME() key:

 info->Set( ttkAlgorithm::DATA_TYPE_NAME(), "vtkUnstructuredGrid" );

or to pass a type of an input port to an output port by adding the ttkAlgorithm::SAME_DATA_TYPE_AS_INPUT_PORT() key (see below).

Note: prior to the execution of the RequestData method the pipeline will initialize empty output data objects based on this information.

Definition at line 73 of file ttkMergeTreeDistanceMatrix.cpp.

◆ GetAssignmentSolver()

int ttkMergeTreeDistanceMatrix::GetAssignmentSolver ( )

inline

Definition at line 151 of file ttkMergeTreeDistanceMatrix.h.

◆ GetBackend()

virtual int ttkMergeTreeDistanceMatrix::GetBackend ( )

virtual

◆ GetBranchDecomposition()

int ttkMergeTreeDistanceMatrix::GetBranchDecomposition ( )

inline

Definition at line 159 of file ttkMergeTreeDistanceMatrix.h.

◆ GetClassName()

virtual const char * ttkMergeTreeDistanceMatrix::GetClassName ( )

virtual

Reimplemented from ttkAlgorithm.

◆ GetDistanceSquaredRoot()

int ttkMergeTreeDistanceMatrix::GetDistanceSquaredRoot ( )

inline

Definition at line 183 of file ttkMergeTreeDistanceMatrix.h.

◆ GetEpsilon1UseFarthestSaddle()

bool ttkMergeTreeDistanceMatrix::GetEpsilon1UseFarthestSaddle ( )

inline

Definition at line 76 of file ttkMergeTreeDistanceMatrix.h.

◆ GetKeepSubtree()

int ttkMergeTreeDistanceMatrix::GetKeepSubtree ( )

inline

Definition at line 175 of file ttkMergeTreeDistanceMatrix.h.

◆ GetmixtureCoefficient_()

virtual double ttkMergeTreeDistanceMatrix::GetmixtureCoefficient_ ( )

virtual

◆ GetNormalizedWasserstein()

int ttkMergeTreeDistanceMatrix::GetNormalizedWasserstein ( )

inline

Definition at line 167 of file ttkMergeTreeDistanceMatrix.h.

◆ GetUseFieldDataParameters()

virtual bool ttkMergeTreeDistanceMatrix::GetUseFieldDataParameters ( )

virtual

◆ IsA()

virtual int ttkMergeTreeDistanceMatrix::IsA ( const char * type )

virtual

Reimplemented from ttkAlgorithm.

◆ IsTypeOf()

static int ttkMergeTreeDistanceMatrix::IsTypeOf ( const char * type )

static

◆ New()

static ttkMergeTreeDistanceMatrix * ttkMergeTreeDistanceMatrix::New ( )

static

This static method and the macro below are VTK conventions on how to instantiate VTK objects. You don't have to modify this.

◆ RequestData()

int ttkMergeTreeDistanceMatrix::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

overrideprotected

Pass VTK data to the base code and convert base code output to VTK (see cpp file)

Definition at line 274 of file ttkMergeTreeDistanceMatrix.cpp.

◆ run()

template<class dataType >

int ttkMergeTreeDistanceMatrix::run	(	vtkInformationVector *	outputVector,
		std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &	inputTrees,
		std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &	inputTrees2
	)

protected

Pass VTK data to the base code and convert base code output to VTK

This method is called during the pipeline execution to update the already initialized output data objects based on the given input data objects and filter parameters.

Note: 1) The passed input data objects are validated based on the information provided by the FillInputPortInformation method. 2) The output objects are already initialized based on the information provided by the FillOutputPortInformation method.

Definition at line 97 of file ttkMergeTreeDistanceMatrix.cpp.

◆ SafeDownCast()

static ttkMergeTreeDistanceMatrix * ttkMergeTreeDistanceMatrix::SafeDownCast ( vtkObject * o )

static

◆ SetAssignmentSolver()

void ttkMergeTreeDistanceMatrix::SetAssignmentSolver ( int assignmentSolver )

inline

Definition at line 147 of file ttkMergeTreeDistanceMatrix.h.

◆ SetBackend()

void ttkMergeTreeDistanceMatrix::SetBackend ( int newBackend )

inline

Definition at line 131 of file ttkMergeTreeDistanceMatrix.h.

◆ SetBranchDecomposition()

void ttkMergeTreeDistanceMatrix::SetBranchDecomposition ( bool branchDecomposition )

inline

Definition at line 155 of file ttkMergeTreeDistanceMatrix.h.

◆ SetBranchMetric()

void ttkMergeTreeDistanceMatrix::SetBranchMetric ( int m )

inline

Definition at line 120 of file ttkMergeTreeDistanceMatrix.h.

◆ SetDeleteMultiPersPairs() [1/2]

bool ttkMergeTreeDistanceMatrix::SetDeleteMultiPersPairs ( )

inline

Definition at line 116 of file ttkMergeTreeDistanceMatrix.h.

◆ SetDeleteMultiPersPairs() [2/2]

void ttkMergeTreeDistanceMatrix::SetDeleteMultiPersPairs ( bool doDelete )

inline

Definition at line 112 of file ttkMergeTreeDistanceMatrix.h.

◆ SetDistanceSquaredRoot()

void ttkMergeTreeDistanceMatrix::SetDistanceSquaredRoot ( bool distanceSquaredRoot )

inline

Definition at line 179 of file ttkMergeTreeDistanceMatrix.h.

◆ SetEpsilon1UseFarthestSaddle()

void ttkMergeTreeDistanceMatrix::SetEpsilon1UseFarthestSaddle ( bool epsilon1UseFarthestSaddle )

inline

Automatically generate getters and setters of filter parameters via vtkMacros.

Definition at line 72 of file ttkMergeTreeDistanceMatrix.h.

◆ SetEpsilon2Tree1() [1/2]

double ttkMergeTreeDistanceMatrix::SetEpsilon2Tree1 ( )

inline

Definition at line 92 of file ttkMergeTreeDistanceMatrix.h.

◆ SetEpsilon2Tree1() [2/2]

void ttkMergeTreeDistanceMatrix::SetEpsilon2Tree1 ( double epsilon2Tree1 )

inline

Definition at line 88 of file ttkMergeTreeDistanceMatrix.h.

◆ SetEpsilon3Tree1() [1/2]

double ttkMergeTreeDistanceMatrix::SetEpsilon3Tree1 ( )

inline

Definition at line 100 of file ttkMergeTreeDistanceMatrix.h.

◆ SetEpsilon3Tree1() [2/2]

void ttkMergeTreeDistanceMatrix::SetEpsilon3Tree1 ( double epsilon3Tree1 )

inline

Definition at line 96 of file ttkMergeTreeDistanceMatrix.h.

◆ SetEpsilonTree1() [1/2]

double ttkMergeTreeDistanceMatrix::SetEpsilonTree1 ( )

inline

Definition at line 84 of file ttkMergeTreeDistanceMatrix.h.

◆ SetEpsilonTree1() [2/2]

void ttkMergeTreeDistanceMatrix::SetEpsilonTree1 ( double epsilonTree1 )

inline

Definition at line 80 of file ttkMergeTreeDistanceMatrix.h.

◆ SetKeepSubtree()

void ttkMergeTreeDistanceMatrix::SetKeepSubtree ( bool keepSubtree )

inline

Definition at line 171 of file ttkMergeTreeDistanceMatrix.h.

◆ SetmixtureCoefficient_()

virtual void ttkMergeTreeDistanceMatrix::SetmixtureCoefficient_ ( double )

virtual

◆ SetNormalizedWasserstein()

void ttkMergeTreeDistanceMatrix::SetNormalizedWasserstein ( bool normalizedWasserstein )

inline

Definition at line 163 of file ttkMergeTreeDistanceMatrix.h.

◆ SetPathMetric()

void ttkMergeTreeDistanceMatrix::SetPathMetric ( int m )

inline

Definition at line 125 of file ttkMergeTreeDistanceMatrix.h.

◆ SetPersistenceThreshold() [1/2]

double ttkMergeTreeDistanceMatrix::SetPersistenceThreshold ( )

inline

Definition at line 108 of file ttkMergeTreeDistanceMatrix.h.

◆ SetPersistenceThreshold() [2/2]

void ttkMergeTreeDistanceMatrix::SetPersistenceThreshold ( double persistenceThreshold )

inline

Definition at line 104 of file ttkMergeTreeDistanceMatrix.h.

◆ SetUseFieldDataParameters()

virtual void ttkMergeTreeDistanceMatrix::SetUseFieldDataParameters ( bool )

virtual

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkMergeTreeDistanceMatrix/ttkMergeTreeDistanceMatrix.h
/home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkMergeTreeDistanceMatrix/ttkMergeTreeDistanceMatrix.cpp

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ ttkMergeTreeDistanceMatrix()

◆ ~ttkMergeTreeDistanceMatrix()

Member Function Documentation

◆ FillInputPortInformation()

◆ FillOutputPortInformation()

◆ GetAssignmentSolver()

◆ GetBackend()

◆ GetBranchDecomposition()

◆ GetClassName()

◆ GetDistanceSquaredRoot()

◆ GetEpsilon1UseFarthestSaddle()

◆ GetKeepSubtree()

◆ GetmixtureCoefficient_()

◆ GetNormalizedWasserstein()

◆ GetUseFieldDataParameters()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ RequestData()

◆ run()

◆ SafeDownCast()

◆ SetAssignmentSolver()

◆ SetBackend()

◆ SetBranchDecomposition()

◆ SetBranchMetric()

◆ SetDeleteMultiPersPairs() [1/2]

◆ SetDeleteMultiPersPairs() [2/2]

◆ SetDistanceSquaredRoot()

◆ SetEpsilon1UseFarthestSaddle()

◆ SetEpsilon2Tree1() [1/2]

◆ SetEpsilon2Tree1() [2/2]

◆ SetEpsilon3Tree1() [1/2]

◆ SetEpsilon3Tree1() [2/2]

◆ SetEpsilonTree1() [1/2]

◆ SetEpsilonTree1() [2/2]

◆ SetKeepSubtree()

◆ SetmixtureCoefficient_()

◆ SetNormalizedWasserstein()

◆ SetPathMetric()

◆ SetPersistenceThreshold() [1/2]

◆ SetPersistenceThreshold() [2/2]

◆ SetUseFieldDataParameters()