ttkMergeTreeDistanceMatrix Class Reference

TTK VTK-filter that wraps the ttk::MergeTreeDistanceMatrix module. More...

#include <ttkMergeTreeDistanceMatrix.h>

Inheritance diagram for ttkMergeTreeDistanceMatrix:

Public Types
typedef ttkAlgorithm	Superclass
Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm	Superclass

Public Member Functions
void	SetEpsilon1UseFarthestSaddle (bool epsilon1UseFarthestSaddle)
bool	GetEpsilon1UseFarthestSaddle ()
void	SetEpsilonTree1 (double epsilonTree1)
double	SetEpsilonTree1 ()
void	SetEpsilon2Tree1 (double epsilon2Tree1)
double	SetEpsilon2Tree1 ()
void	SetEpsilon3Tree1 (double epsilon3Tree1)
double	SetEpsilon3Tree1 ()
void	SetPersistenceThreshold (double persistenceThreshold)
double	SetPersistenceThreshold ()
void	SetDeleteMultiPersPairs (bool doDelete)
bool	SetDeleteMultiPersPairs ()
void	SetBranchMetric (int m)
void	SetPathMetric (int m)
void	SetBackend (int newBackend)
virtual int	GetBackend ()
void	SetAssignmentSolver (int assignmentSolver)
int	GetAssignmentSolver ()
void	SetBranchDecomposition (bool branchDecomposition)
int	GetBranchDecomposition ()
void	SetNormalizedWasserstein (bool normalizedWasserstein)
int	GetNormalizedWasserstein ()
void	SetKeepSubtree (bool keepSubtree)
int	GetKeepSubtree ()
void	SetDistanceSquaredRoot (bool distanceSquaredRoot)
int	GetDistanceSquaredRoot ()
virtual void	SetUseFieldDataParameters (bool)
virtual bool	GetUseFieldDataParameters ()
virtual void	SetmixtureCoefficient_ (double)
virtual double	GetmixtureCoefficient_ ()
virtual const char *	GetClassName ()
virtual int	IsA (const char *type)
Public Member Functions inherited from ttkAlgorithm
virtual const char *	GetClassName ()
virtual int	IsA (const char *type)
void	UpdateThreadNumber ()
void	SetThreadNumber (int threadNumber)
void	SetUseAllCores (bool useAllCores)
void	SetDebugLevel (int debugLevel)
void	SetCompactTriangulationCacheSize (float cacheSize)
vtkDataArray *	GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)
vtkDataArray *	GetOrderArray (vtkDataSet *const inputData, const int scalarArrayIdx, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)
ttk::SimplexId *	GetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)
ttk::Triangulation *	GetTriangulation (vtkDataSet *dataSet)
int	ProcessRequest (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override
vtkDataSet *	GetOutput ()
vtkDataSet *	GetOutput (int)
void	SetInputData (vtkDataSet *)
void	SetInputData (int, vtkDataSet *)
void	AddInputData (vtkDataSet *)
void	AddInputData (int, vtkDataSet *)
template<typename inputType >
int	checkEmptyMPIInput (inputType *input)
	This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.
Public Member Functions inherited from ttk::Debug
	Debug ()
	~Debug () override
virtual int	setDebugLevel (const int &debugLevel)
int	setWrapper (const Wrapper *wrapper) override
int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
void	setDebugMsgPrefix (const std::string &prefix)
Public Member Functions inherited from ttk::BaseClass
	BaseClass ()
virtual	~BaseClass ()=default
int	getThreadNumber () const
virtual int	setThreadNumber (const int threadNumber)
virtual int	setWrapper (const Wrapper *wrapper)

Static Public Member Functions
static ttkMergeTreeDistanceMatrix *	New ()
static int	IsTypeOf (const char *type)
static ttkMergeTreeDistanceMatrix *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithm *	New ()
static int	IsTypeOf (const char *type)
static ttkAlgorithm *	SafeDownCast (vtkObject *o)
static std::string	GetOrderArrayName (vtkDataArray *const array)
static vtkInformationIntegerKey *	SAME_DATA_TYPE_AS_INPUT_PORT ()

Protected Member Functions
	ttkMergeTreeDistanceMatrix ()
	~ttkMergeTreeDistanceMatrix () override
int	FillInputPortInformation (int port, vtkInformation *info) override
int	FillOutputPortInformation (int port, vtkInformation *info) override
int	RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
template<class dataType >
int	run (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees2)
Protected Member Functions inherited from ttkAlgorithm
	ttkAlgorithm ()
	~ttkAlgorithm () override
void	MPIGhostPipelinePreconditioning (vtkDataSet *input)
void	MPIPipelinePreconditioning (vtkDataSet *input, std::vector< int > &neighbors, ttk::Triangulation *triangulation=nullptr)
bool	checkGlobalIdValidity (ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray)
int	GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks)
void	MPITriangulationPreconditioning (ttk::Triangulation *triangulation, vtkDataSet *input)
virtual int	RequestDataObject (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector)
virtual int	RequestInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestUpdateTime (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestUpdateTimeDependentInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestUpdateExtent (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestDataNotGenerated (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
virtual int	RequestData (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
int	FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
int	FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
int	welcomeMsg (std::ostream &stream)
Protected Member Functions inherited from ttk::MergeTreeDistanceMatrix
	MergeTreeDistanceMatrix ()
	~MergeTreeDistanceMatrix () override=default
void	setBaseModule (int m)
void	setBranchMetric (int m)
void	setPathMetric (int m)
template<class dataType >
void	execute (std::vector< ftm::MergeTree< dataType > > &trees, std::vector< ftm::MergeTree< dataType > > &trees2, std::vector< std::vector< double > > &distanceMatrix)
template<class dataType >
void	execute (std::vector< ftm::MergeTree< dataType > > &ftmtrees, std::vector< std::vector< double > > &distanceMatrix)
template<class dataType >
void	executePara (std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &distanceMatrix, bool isFirstInput=true)
template<class dataType >
void	executeParaImpl (std::vector< ftm::MergeTree< dataType > > &trees, std::vector< std::vector< double > > &distanceMatrix, bool isFirstInput=true)
Protected Member Functions inherited from ttk::MergeTreeBase
	MergeTreeBase ()
void	setAssignmentSolver (int assignmentSolver)
void	setEpsilon1UseFarthestSaddle (bool b)
void	setEpsilonTree1 (double epsilon)
void	setEpsilonTree2 (double epsilon)
void	setEpsilon2Tree1 (double epsilon)
void	setEpsilon2Tree2 (double epsilon)
void	setEpsilon3Tree1 (double epsilon)
void	setEpsilon3Tree2 (double epsilon)
void	setPersistenceThreshold (double pt)
void	setParallelize (bool para)
void	setNodePerTask (int npt)
void	setBranchDecomposition (bool useBD)
void	setNormalizedWasserstein (bool normalizedWasserstein)
void	setKeepSubtree (bool keepSubtree)
void	setBarycenterMergeTree (bool imt)
void	setDistanceSquaredRoot (bool distanceSquaredRoot)
void	setUseMinMaxPair (bool useMinMaxPair)
void	setDeleteMultiPersPairs (bool deleteMultiPersPairsT)
void	setCleanTree (bool clean)
void	setIsPersistenceDiagram (bool isPD)
std::vector< std::vector< int > >	getTreesNodeCorr ()
double	mixDistancesMinMaxPairWeight (bool isFirstInput)
double	mixDistancesWeight (bool isFirstInput)
template<class dataType >
double	mixDistances (dataType distance1, dataType distance2)
template<class dataType >
void	mixDistancesMatrix (std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)
template<class dataType >
void	mergeSaddle (ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)
template<class dataType >
void	persistenceMerging (ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)
template<class dataType >
void	keepMostImportantPairs (ftm::FTMTree_MT *tree, int n, bool useBD)
template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)
template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)
template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT)
template<class dataType >
void	persistenceThresholding (ftm::FTMTree_MT *tree)
template<class dataType >
void	verifyOrigins (ftm::FTMTree_MT *tree)
template<class dataType >
void	preprocessTree (ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)
template<class dataType >
ftm::FTMTree_MT *	computeBranchDecomposition (ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)
template<class dataType >
void	dontUseMinMaxPair (ftm::FTMTree_MT *tree)
void	verifyPairsTree (ftm::FTMTree_MT *tree)
template<class dataType >
void	deleteMultiPersPairs (ftm::FTMTree_MT *tree, bool useBD)
template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)
template<class dataType >
void	preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)
void	reverseNodeCorr (ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)
template<class dataType >
void	mtFlattening (ftm::MergeTree< dataType > &mt)
template<class dataType >
void	mtsFlattening (std::vector< ftm::MergeTree< dataType > > &mts)
double	getSizeLimitMetric (std::vector< ftm::FTMTree_MT * > &trees)
template<class dataType >
void	copyMinMaxPair (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)
template<class dataType >
std::tuple< int, dataType >	fixMergedRootOrigin (ftm::FTMTree_MT *tree)
template<class dataType >
void	branchDecompositionToTree (ftm::FTMTree_MT *tree)
template<class dataType >
void	putBackMergedNodes (ftm::FTMTree_MT *tree)
template<class dataType >
void	postprocessingPipeline (ftm::FTMTree_MT *tree)
template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)
template<class dataType >
void	convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)
template<class dataType >
void	identifyRealMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)
template<class dataType >
dataType	computeDistance (dataType x1, dataType x2, dataType y1, dataType y2, double power=2)
template<class dataType >
dataType	deleteCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)
template<class dataType >
dataType	insertCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)
template<class dataType >
dataType	relabelCostOnly (ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
template<class dataType >
dataType	relabelCost (ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
void	getParamNames (std::vector< std::string > &paramNames)
double	getParamValueFromName (std::string &paramName)
void	setParamValueFromName (std::string &paramName, double value)
void	getTreesStats (std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)
void	printTreesStats (std::vector< ftm::FTMTree_MT * > &trees)
template<class dataType >
void	printTreesStats (std::vector< ftm::MergeTree< dataType > > &trees)
template<class dataType >
void	printTableVector (std::vector< std::vector< dataType > > &table)
template<class dataType >
void	printTable (dataType *table, int nRows, int nCols)
void	printMatching (std::vector< MatchingType > &matchings)
void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)
void	printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)
template<class dataType >
void	printPairs (std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)
template<class dataType >
void	printOutputMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true)

Additional Inherited Members
Protected Attributes inherited from ttkAlgorithm
float	CompactTriangulationCacheSize {0.2f}
Protected Attributes inherited from ttk::Debug
int	debugLevel_
std::string	debugMsgPrefix_
std::string	debugMsgNamePrefix_
Protected Attributes inherited from ttk::BaseClass
bool	lastObject_
int	threadNumber_
Wrapper *	wrapper_
Protected Attributes inherited from ttk::MergeTreeDistanceMatrix
int	baseModule_ = 0
int	branchMetric_ = 0
int	pathMetric_ = 0
Protected Attributes inherited from ttk::MergeTreeBase
int	assignmentSolverID_ = 0
bool	epsilon1UseFarthestSaddle_ = false
double	epsilonTree1_ = 0
double	epsilonTree2_ = 0
double	epsilon2Tree1_ = 100
double	epsilon2Tree2_ = 100
double	epsilon3Tree1_ = 100
double	epsilon3Tree2_ = 100
double	persistenceThreshold_ = 0
bool	barycenterMergeTree_ = false
bool	useMinMaxPair_ = true
bool	deleteMultiPersPairs_ = false
bool	branchDecomposition_ = true
int	wassersteinPower_ = 2
bool	normalizedWasserstein_ = true
bool	keepSubtree_ = false
bool	distanceSquaredRoot_ = true
bool	useFullMerge_ = false
bool	isPersistenceDiagram_ = false
bool	convertToDiagram_ = false
double	mixtureCoefficient_ = 0.5
bool	useDoubleInput_ = false
bool	parallelize_ = true
int	nodePerTask_ = 32
bool	cleanTree_ = true
std::vector< std::vector< int > >	treesNodeCorr_
Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK VTK-filter that wraps the ttk::MergeTreeDistanceMatrix module.

Author

Mathieu Pont mathi.nosp@m.eu.p.nosp@m.ont@l.nosp@m.ip6..nosp@m.fr

Date

2021.

This VTK filter uses the ttk::MergeTreeDistanceMatrix module to compute the distance matrix of a group of merge trees.

Parameters

Input	vtkMultiBlockDataset
Output	vtkTable

This filter can be used as any other VTK filter (for instance, by using the sequence of calls SetInputData(), Update(), GetOutputDataObject()).

See the related ParaView example state files for usage examples within a VTK pipeline.

See also

ttk::MergeTreeDistanceMatrix

ttkAlgorithm

Online examples:

• Merge Tree Clustering example
  
• Merge Tree Principal Geodesic Analysis example
  

Definition at line 45 of file ttkMergeTreeDistanceMatrix.h.

Member Typedef Documentation

Superclass

typedef ttkAlgorithm ttkMergeTreeDistanceMatrix::Superclass

Definition at line 195 of file ttkMergeTreeDistanceMatrix.h.

Constructor & Destructor Documentation

ttkMergeTreeDistanceMatrix()

ttkMergeTreeDistanceMatrix::ttkMergeTreeDistanceMatrix ( )

protected

Implement the filter constructor and destructor (see cpp file)

Implement the filter constructor and destructor in the cpp file.

The constructor has to specify the number of input and output ports with the functions SetNumberOfInputPorts and SetNumberOfOutputPorts, respectively. It should also set default values for all filter parameters.

The destructor is usually empty unless you want to manage memory explicitly, by for example allocating memory on the heap that needs to be freed when the filter is destroyed.

Definition at line 32 of file ttkMergeTreeDistanceMatrix.cpp.

~ttkMergeTreeDistanceMatrix()

ttkMergeTreeDistanceMatrix::~ttkMergeTreeDistanceMatrix ( )

overrideprotecteddefault

Member Function Documentation

FillInputPortInformation()

int ttkMergeTreeDistanceMatrix::FillInputPortInformation ( int  port, vtkInformation *  info  )

overrideprotected

Specify the input data type of each input port (see cpp file)

Specify the required input data type of each input port

This method specifies the required input object data types of the filter by adding the vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE() key to the port information.

Definition at line 46 of file ttkMergeTreeDistanceMatrix.cpp.

FillOutputPortInformation()

int ttkMergeTreeDistanceMatrix::FillOutputPortInformation ( int  port, vtkInformation *  info  )

overrideprotected

Specify the data object type of each output port (see cpp file)

Specify the data object type of each output port

This method specifies in the port information object the data type of the corresponding output objects. It is possible to either explicitly specify a type by adding a vtkDataObject::DATA_TYPE_NAME() key:

 info->Set( ttkAlgorithm::DATA_TYPE_NAME(), "vtkUnstructuredGrid" );

or to pass a type of an input port to an output port by adding the ttkAlgorithm::SAME_DATA_TYPE_AS_INPUT_PORT() key (see below).

Note: prior to the execution of the RequestData method the pipeline will initialize empty output data objects based on this information.

Definition at line 73 of file ttkMergeTreeDistanceMatrix.cpp.

GetAssignmentSolver()

int ttkMergeTreeDistanceMatrix::GetAssignmentSolver ( )

inline

Definition at line 148 of file ttkMergeTreeDistanceMatrix.h.

GetBackend()

virtual int ttkMergeTreeDistanceMatrix::GetBackend ( )

virtual

GetBranchDecomposition()

int ttkMergeTreeDistanceMatrix::GetBranchDecomposition ( )

inline

Definition at line 156 of file ttkMergeTreeDistanceMatrix.h.

GetClassName()

virtual const char * ttkMergeTreeDistanceMatrix::GetClassName ( )

virtual

Reimplemented from ttkAlgorithm.

GetDistanceSquaredRoot()

int ttkMergeTreeDistanceMatrix::GetDistanceSquaredRoot ( )

inline

Definition at line 180 of file ttkMergeTreeDistanceMatrix.h.

GetEpsilon1UseFarthestSaddle()

bool ttkMergeTreeDistanceMatrix::GetEpsilon1UseFarthestSaddle ( )

inline

Definition at line 73 of file ttkMergeTreeDistanceMatrix.h.

GetKeepSubtree()

int ttkMergeTreeDistanceMatrix::GetKeepSubtree ( )

inline

Definition at line 172 of file ttkMergeTreeDistanceMatrix.h.

GetmixtureCoefficient_()

virtual double ttkMergeTreeDistanceMatrix::GetmixtureCoefficient_ ( )

virtual

GetNormalizedWasserstein()

int ttkMergeTreeDistanceMatrix::GetNormalizedWasserstein ( )

inline

Definition at line 164 of file ttkMergeTreeDistanceMatrix.h.

GetUseFieldDataParameters()

virtual bool ttkMergeTreeDistanceMatrix::GetUseFieldDataParameters ( )

virtual

IsA()

virtual int ttkMergeTreeDistanceMatrix::IsA ( const char *  type )

virtual

Reimplemented from ttkAlgorithm.

IsTypeOf()

static int ttkMergeTreeDistanceMatrix::IsTypeOf ( const char *  type )

static

New()

static ttkMergeTreeDistanceMatrix * ttkMergeTreeDistanceMatrix::New ( )

static

This static method and the macro below are VTK conventions on how to instantiate VTK objects. You don't have to modify this.

RequestData()

int ttkMergeTreeDistanceMatrix::RequestData ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector  )

overrideprotected

Pass VTK data to the base code and convert base code output to VTK (see cpp file)

Definition at line 274 of file ttkMergeTreeDistanceMatrix.cpp.

run()

template<class dataType >

int ttkMergeTreeDistanceMatrix::run ( vtkInformationVector *  outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees2  )

protected

Pass VTK data to the base code and convert base code output to VTK

This method is called during the pipeline execution to update the already initialized output data objects based on the given input data objects and filter parameters.

Note: 1) The passed input data objects are validated based on the information provided by the FillInputPortInformation method. 2) The output objects are already initialized based on the information provided by the FillOutputPortInformation method.

Definition at line 97 of file ttkMergeTreeDistanceMatrix.cpp.

SafeDownCast()

static ttkMergeTreeDistanceMatrix * ttkMergeTreeDistanceMatrix::SafeDownCast ( vtkObject *  o )

static

SetAssignmentSolver()

void ttkMergeTreeDistanceMatrix::SetAssignmentSolver ( int  assignmentSolver )

inline

Definition at line 144 of file ttkMergeTreeDistanceMatrix.h.

SetBackend()

void ttkMergeTreeDistanceMatrix::SetBackend ( int  newBackend )

inline

Definition at line 128 of file ttkMergeTreeDistanceMatrix.h.

SetBranchDecomposition()

void ttkMergeTreeDistanceMatrix::SetBranchDecomposition ( bool  branchDecomposition )

inline

Definition at line 152 of file ttkMergeTreeDistanceMatrix.h.

SetBranchMetric()

void ttkMergeTreeDistanceMatrix::SetBranchMetric ( int  m )

inline

Definition at line 117 of file ttkMergeTreeDistanceMatrix.h.

SetDeleteMultiPersPairs() [1/2]

bool ttkMergeTreeDistanceMatrix::SetDeleteMultiPersPairs ( )

inline

Definition at line 113 of file ttkMergeTreeDistanceMatrix.h.

SetDeleteMultiPersPairs() [2/2]

void ttkMergeTreeDistanceMatrix::SetDeleteMultiPersPairs ( bool  doDelete )

inline

Definition at line 109 of file ttkMergeTreeDistanceMatrix.h.

SetDistanceSquaredRoot()

void ttkMergeTreeDistanceMatrix::SetDistanceSquaredRoot ( bool  distanceSquaredRoot )

inline

Definition at line 176 of file ttkMergeTreeDistanceMatrix.h.

SetEpsilon1UseFarthestSaddle()

void ttkMergeTreeDistanceMatrix::SetEpsilon1UseFarthestSaddle ( bool  epsilon1UseFarthestSaddle )

inline

Automatically generate getters and setters of filter parameters via vtkMacros.

Definition at line 69 of file ttkMergeTreeDistanceMatrix.h.

SetEpsilon2Tree1() [1/2]

double ttkMergeTreeDistanceMatrix::SetEpsilon2Tree1 ( )

inline

Definition at line 89 of file ttkMergeTreeDistanceMatrix.h.

SetEpsilon2Tree1() [2/2]

void ttkMergeTreeDistanceMatrix::SetEpsilon2Tree1 ( double  epsilon2Tree1 )

inline

Definition at line 85 of file ttkMergeTreeDistanceMatrix.h.

SetEpsilon3Tree1() [1/2]

double ttkMergeTreeDistanceMatrix::SetEpsilon3Tree1 ( )

inline

Definition at line 97 of file ttkMergeTreeDistanceMatrix.h.

SetEpsilon3Tree1() [2/2]

void ttkMergeTreeDistanceMatrix::SetEpsilon3Tree1 ( double  epsilon3Tree1 )

inline

Definition at line 93 of file ttkMergeTreeDistanceMatrix.h.

SetEpsilonTree1() [1/2]

double ttkMergeTreeDistanceMatrix::SetEpsilonTree1 ( )

inline

Definition at line 81 of file ttkMergeTreeDistanceMatrix.h.

SetEpsilonTree1() [2/2]

void ttkMergeTreeDistanceMatrix::SetEpsilonTree1 ( double  epsilonTree1 )

inline

Definition at line 77 of file ttkMergeTreeDistanceMatrix.h.

SetKeepSubtree()

void ttkMergeTreeDistanceMatrix::SetKeepSubtree ( bool  keepSubtree )

inline

Definition at line 168 of file ttkMergeTreeDistanceMatrix.h.

SetmixtureCoefficient_()

virtual void ttkMergeTreeDistanceMatrix::SetmixtureCoefficient_ ( double  )

virtual

SetNormalizedWasserstein()

void ttkMergeTreeDistanceMatrix::SetNormalizedWasserstein ( bool  normalizedWasserstein )

inline

Definition at line 160 of file ttkMergeTreeDistanceMatrix.h.

SetPathMetric()

void ttkMergeTreeDistanceMatrix::SetPathMetric ( int  m )

inline

Definition at line 122 of file ttkMergeTreeDistanceMatrix.h.

SetPersistenceThreshold() [1/2]

double ttkMergeTreeDistanceMatrix::SetPersistenceThreshold ( )

inline

Definition at line 105 of file ttkMergeTreeDistanceMatrix.h.

SetPersistenceThreshold() [2/2]

void ttkMergeTreeDistanceMatrix::SetPersistenceThreshold ( double  persistenceThreshold )

inline

Definition at line 101 of file ttkMergeTreeDistanceMatrix.h.

SetUseFieldDataParameters()

virtual void ttkMergeTreeDistanceMatrix::SetUseFieldDataParameters ( bool  )

virtual

---

The documentation for this class was generated from the following files:

• /home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkMergeTreeDistanceMatrix/ttkMergeTreeDistanceMatrix.h
• /home/julien/Pro/git/github/ttk-tierny/core/vtk/ttkMergeTreeDistanceMatrix/ttkMergeTreeDistanceMatrix.cpp