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ttkMergeTreeTemporalReductionDecoding Class Reference

TTK VTK-filter that wraps the ttk::MergeTreeTemporalReductionDecoding module. More...

#include <ttkMergeTreeTemporalReductionDecoding.h>

Inheritance diagram for ttkMergeTreeTemporalReductionDecoding:
ttkAlgorithm ttk::MergeTreeTemporalReductionDecoding ttk::Debug ttk::Debug ttk::MergeTreeBase ttk::BaseClass ttk::BaseClass ttk::Debug ttk::BaseClass

Public Types

typedef ttkAlgorithm Superclass
 
- Public Types inherited from ttkAlgorithm
typedef vtkAlgorithm Superclass
 

Public Member Functions

void SetAssignmentSolver (int assignmentSolver)
 
int GetAssignmentSolver ()
 
virtual void SetOutputTrees (bool)
 
virtual bool GetOutputTrees ()
 
virtual void SetPlanarLayout (bool)
 
virtual bool GetPlanarLayout ()
 
virtual void SetBranchDecompositionPlanarLayout (bool)
 
virtual bool GetBranchDecompositionPlanarLayout ()
 
virtual void SetBranchSpacing (double)
 
virtual double GetBranchSpacing ()
 
virtual void SetRescaleTreesIndividually (bool)
 
virtual bool GetRescaleTreesIndividually ()
 
virtual void SetDimensionSpacing (double)
 
virtual double GetDimensionSpacing ()
 
virtual void SetDimensionToShift (int)
 
virtual int GetDimensionToShift ()
 
virtual void SetImportantPairs (double)
 
virtual double GetImportantPairs ()
 
virtual void SetMaximumImportantPairs (int)
 
virtual int GetMaximumImportantPairs ()
 
virtual void SetMinimumImportantPairs (int)
 
virtual int GetMinimumImportantPairs ()
 
virtual void SetImportantPairsSpacing (double)
 
virtual double GetImportantPairsSpacing ()
 
virtual void SetNonImportantPairsSpacing (double)
 
virtual double GetNonImportantPairsSpacing ()
 
virtual void SetNonImportantPairsProximity (double)
 
virtual double GetNonImportantPairsProximity ()
 
virtual void SetExcludeImportantPairsLower (const std::string &)
 
virtual std::string GetExcludeImportantPairsLower ()
 
virtual void SetExcludeImportantPairsHigher (const std::string &)
 
virtual std::string GetExcludeImportantPairsHigher ()
 
virtual const char * GetClassName ()
 
virtual int IsA (const char *type)
 
- Public Member Functions inherited from ttkAlgorithm
void UpdateThreadNumber ()
 
void SetThreadNumber (int threadNumber)
 
void SetUseAllCores (bool useAllCores)
 
void SetDebugLevel (int debugLevel)
 
void SetCompactTriangulationCacheSize (float cacheSize)
 
vtkDataArray * GetOptionalArray (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, const int &inputPort=0)
 
vtkDataArray * GetOrderArray (vtkDataSet *const inputData, const int scalarArrayIdx, ttk::Triangulation *triangulation, const bool getGlobalOrder=false, const int orderArrayIdx=0, const bool enforceOrderArrayIdx=false)
 
vtkDataArray * checkForGlobalAndComputeOrderArray (vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *orderArray, ttk::Triangulation *triangulation, const bool enforceOrderArrayIdx)
 
vtkDataArray * ComputeOrderArray (vtkDataSet *const inputData, vtkDataArray *scalarArray, const int scalarArrayIdx, const bool getGlobalOrder, vtkDataArray *oldOrderArray, ttk::Triangulation *triangulation)
 
ttk::SimplexIdGetIdentifierArrayPtr (const bool &enforceArrayIndex, const int &arrayIndex, const std::string &arrayName, vtkDataSet *const inputData, std::vector< ttk::SimplexId > &spareStorage, const int inputPort=0, const bool printErr=true)
 
ttk::TriangulationGetTriangulation (vtkDataSet *dataSet)
 
int ProcessRequest (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector) override
 
vtkDataSet * GetOutput ()
 
vtkDataSet * GetOutput (int)
 
void SetInputData (vtkDataSet *)
 
void SetInputData (int, vtkDataSet *)
 
void AddInputData (vtkDataSet *)
 
void AddInputData (int, vtkDataSet *)
 
template<typename inputType >
int checkEmptyMPIInput (inputType *input)
 This method tests whether the input is a nullptr. If the computation is being done on multiple processes, it is possible that the domain of one process or more is empty, but not others, therefore in that particular case the rest of the filter will not be computed but an error message will not be sent.
 
- Public Member Functions inherited from ttk::Debug
 Debug ()
 
 ~Debug () override
 
virtual int setDebugLevel (const int &debugLevel)
 
int setWrapper (const Wrapper *wrapper) override
 
int printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
int printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const
 
void setDebugMsgPrefix (const std::string &prefix)
 
- Public Member Functions inherited from ttk::BaseClass
 BaseClass ()
 
virtual ~BaseClass ()=default
 
int getThreadNumber () const
 
virtual int setThreadNumber (const int threadNumber)
 

Static Public Member Functions

static ttkMergeTreeTemporalReductionDecodingNew ()
 
static int IsTypeOf (const char *type)
 
static ttkMergeTreeTemporalReductionDecodingSafeDownCast (vtkObject *o)
 
- Static Public Member Functions inherited from ttkAlgorithm
static ttkAlgorithmNew ()
 
static int IsTypeOf (const char *type)
 
static ttkAlgorithmSafeDownCast (vtkObject *o)
 
static std::string GetOrderArrayName (vtkDataArray *const array)
 
static vtkInformationIntegerKey * SAME_DATA_TYPE_AS_INPUT_PORT ()
 

Protected Member Functions

 ttkMergeTreeTemporalReductionDecoding ()
 
 ~ttkMergeTreeTemporalReductionDecoding () override
 
int FillInputPortInformation (int port, vtkInformation *info) override
 
int FillOutputPortInformation (int port, vtkInformation *info) override
 
int RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
 
template<class dataType >
int run (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< std::tuple< double, int, int, int, int > > &coefs, std::vector< bool > &interpolatedTrees)
 
template<class dataType >
int runCompute (std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< std::tuple< double, int, int, int, int > > &coefs)
 
template<class dataType >
int runOutput (vtkInformationVector *outputVector, std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &inputTrees, std::vector< std::tuple< double, int, int, int, int > > &coefs, std::vector< bool > &interpolatedTrees)
 
- Protected Member Functions inherited from ttkAlgorithm
 ttkAlgorithm ()
 
 ~ttkAlgorithm () override
 
void MPIGhostPipelinePreconditioning (vtkDataSet *input)
 
void MPIPipelinePreconditioning (vtkDataSet *input, std::vector< int > &neighbors, std::map< int, int > &neighToId, ttk::Triangulation *triangulation=nullptr)
 
bool checkGlobalIdValidity (ttk::LongSimplexId *globalIds, ttk::SimplexId simplexNumber, unsigned char *ghost, int *rankArray)
 
int GenerateGlobalIds (vtkDataSet *input, std::unordered_map< ttk::SimplexId, ttk::SimplexId > &vertGtoL, std::vector< int > &neighborRanks, std::map< int, int > &neighborsToId)
 
void MPITriangulationPreconditioning (ttk::Triangulation *triangulation, vtkDataSet *input)
 
virtual int RequestDataObject (vtkInformation *request, vtkInformationVector **inputVectors, vtkInformationVector *outputVector)
 
virtual int RequestInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateTime (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateTimeDependentInformation (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestUpdateExtent (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestDataNotGenerated (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
virtual int RequestData (vtkInformation *ttkNotUsed(request), vtkInformationVector **ttkNotUsed(inputVectors), vtkInformationVector *ttkNotUsed(outputVector))
 
int FillInputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
 
int FillOutputPortInformation (int ttkNotUsed(port), vtkInformation *ttkNotUsed(info)) override
 
- Protected Member Functions inherited from ttk::Debug
int printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const
 
int printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const
 
int welcomeMsg (std::ostream &stream)
 
- Protected Member Functions inherited from ttk::MergeTreeTemporalReductionDecoding
 MergeTreeTemporalReductionDecoding ()
 
template<class dataType >
dataType computeDistance (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matching)
 
template<class dataType >
dataType computeDistance (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2)
 
template<class dataType >
ftm::MergeTree< dataType > computeBarycenter (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, double alpha)
 
template<class dataType >
void execute (std::vector< ftm::MergeTree< dataType > > &mTrees, std::vector< std::tuple< double, int, int, int, int > > &coefs, std::vector< ftm::MergeTree< dataType > > &allMT, std::vector< std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > > &allMatching)
 
- Protected Member Functions inherited from ttk::MergeTreeBase
 MergeTreeBase ()
 
void setAssignmentSolver (int assignmentSolver)
 
void setEpsilon1UseFarthestSaddle (bool b)
 
void setEpsilonTree1 (double epsilon)
 
void setEpsilonTree2 (double epsilon)
 
void setEpsilon2Tree1 (double epsilon)
 
void setEpsilon2Tree2 (double epsilon)
 
void setEpsilon3Tree1 (double epsilon)
 
void setEpsilon3Tree2 (double epsilon)
 
void setPersistenceThreshold (double pt)
 
void setParallelize (bool para)
 
void setNodePerTask (int npt)
 
void setBranchDecomposition (bool useBD)
 
void setNormalizedWasserstein (bool normalizedWasserstein)
 
void setKeepSubtree (bool keepSubtree)
 
void setNonMatchingWeight (double weight)
 
void setBarycenterMergeTree (bool imt)
 
void setDistanceSquaredRoot (bool distanceSquaredRoot)
 
void setUseMinMaxPair (bool useMinMaxPair)
 
void setDeleteMultiPersPairs (bool deleteMultiPersPairsT)
 
void setCleanTree (bool clean)
 
void setIsPersistenceDiagram (bool isPD)
 
std::vector< std::vector< int > > getTreesNodeCorr ()
 
double mixDistancesMinMaxPairWeight (bool isFirstInput)
 
double mixDistancesWeight (bool isFirstInput)
 
template<class dataType >
double mixDistances (dataType distance1, dataType distance2)
 
template<class dataType >
void mixDistancesMatrix (std::vector< std::vector< dataType > > &distanceMatrix, std::vector< std::vector< dataType > > &distanceMatrix2)
 
template<class dataType >
void mergeSaddle (ftm::FTMTree_MT *tree, double epsilon, std::vector< std::vector< ftm::idNode > > &treeNodeMerged, bool mergeByPersistence=false)
 
template<class dataType >
void persistenceMerging (ftm::FTMTree_MT *tree, double epsilon2, double epsilon3=100)
 
template<class dataType >
void keepMostImportantPairs (ftm::FTMTree_MT *tree, int n, bool useBD)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT, std::vector< ftm::idNode > &deletedNodes)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree, std::vector< ftm::idNode > &deletedNodes)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree, double persistenceThresholdT)
 
template<class dataType >
void persistenceThresholding (ftm::FTMTree_MT *tree)
 
template<class dataType >
void verifyOrigins (ftm::FTMTree_MT *tree)
 
template<class dataType >
void preprocessTree (ftm::FTMTree_MT *tree, bool deleteInconsistentNodes=true)
 
template<class dataType >
ftm::FTMTree_MTcomputeBranchDecomposition (ftm::FTMTree_MT *tree, std::vector< std::vector< ftm::idNode > > &treeNodeMerged)
 
template<class dataType >
void dontUseMinMaxPair (ftm::FTMTree_MT *tree)
 
void verifyPairsTree (ftm::FTMTree_MT *tree)
 
template<class dataType >
void deleteMultiPersPairs (ftm::FTMTree_MT *tree, bool useBD)
 
template<class dataType >
void preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, double persistenceThreshold, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)
 
template<class dataType >
void preprocessingPipeline (ftm::MergeTree< dataType > &mTree, double epsilonTree, double epsilon2Tree, double epsilon3Tree, bool branchDecompositionT, bool useMinMaxPairT, bool cleanTreeT, std::vector< int > &nodeCorr, bool deleteInconsistentNodes=true)
 
void reverseNodeCorr (ftm::FTMTree_MT *tree, std::vector< int > &nodeCorr)
 
template<class dataType >
void mtFlattening (ftm::MergeTree< dataType > &mt)
 
template<class dataType >
void mtsFlattening (std::vector< ftm::MergeTree< dataType > > &mts)
 
double getSizeLimitMetric (std::vector< ftm::FTMTree_MT * > &trees)
 
template<class dataType >
void copyMinMaxPair (ftm::MergeTree< dataType > &mTree1, ftm::MergeTree< dataType > &mTree2, bool setOrigins=false)
 
template<class dataType >
std::tuple< int, dataType > fixMergedRootOrigin (ftm::FTMTree_MT *tree)
 
template<class dataType >
void branchDecompositionToTree (ftm::FTMTree_MT *tree)
 
template<class dataType >
void putBackMergedNodes (ftm::FTMTree_MT *tree)
 
template<class dataType >
void postprocessingPipeline (ftm::FTMTree_MT *tree)
 
template<class dataType >
void convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &outputMatching)
 
template<class dataType >
void convertBranchDecompositionMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching)
 
template<class dataType >
void identifyRealMatching (ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, std::vector< std::tuple< ftm::idNode, ftm::idNode, bool > > &realMatching)
 
template<class dataType >
dataType computeDistance (dataType x1, dataType x2, dataType y1, dataType y2, double power=2)
 
template<class dataType >
dataType deleteCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)
 
template<class dataType >
dataType insertCost (ftm::FTMTree_MT *tree, ftm::idNode nodeId)
 
template<class dataType >
dataType relabelCostOnly (ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
 
template<class dataType >
dataType relabelCost (ftm::FTMTree_MT *tree1, ftm::idNode nodeId1, ftm::FTMTree_MT *tree2, ftm::idNode nodeId2)
 
void getParamNames (std::vector< std::string > &paramNames)
 
double getParamValueFromName (std::string &paramName)
 
void setParamValueFromName (std::string &paramName, double value)
 
void getTreesStats (std::vector< ftm::FTMTree_MT * > &trees, std::array< double, 3 > &stats)
 
void printTreesStats (std::vector< ftm::FTMTree_MT * > &trees)
 
template<class dataType >
void printTreesStats (std::vector< ftm::MergeTree< dataType > > &trees)
 
template<class dataType >
void printTableVector (std::vector< std::vector< dataType > > &table)
 
template<class dataType >
void printTable (dataType *table, int nRows, int nCols)
 
void printMatching (std::vector< MatchingType > &matchings)
 
void printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode, double > > &matchings)
 
void printMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &matchings)
 
template<class dataType >
void printPairs (std::vector< std::tuple< SimplexId, SimplexId, dataType > > &treePairs)
 
template<class dataType >
void printOutputMatching (std::vector< std::tuple< ftm::idNode, ftm::idNode > > &outputMatching, ftm::FTMTree_MT *tree1, ftm::FTMTree_MT *tree2, bool computeCosts=true)
 

Additional Inherited Members

- Protected Attributes inherited from ttkAlgorithm
float CompactTriangulationCacheSize {0.2f}
 
- Protected Attributes inherited from ttk::Debug
int debugLevel_
 
std::string debugMsgPrefix_
 
std::string debugMsgNamePrefix_
 
- Protected Attributes inherited from ttk::BaseClass
bool lastObject_
 
int threadNumber_
 
Wrapperwrapper_
 
- Protected Attributes inherited from ttk::MergeTreeTemporalReductionDecoding
std::vector< double > finalDistances_
 
std::vector< double > distancesToKeyFrames_
 
- Protected Attributes inherited from ttk::MergeTreeBase
int assignmentSolverID_ = 0
 
bool epsilon1UseFarthestSaddle_ = false
 
double epsilonTree1_ = 0
 
double epsilonTree2_ = 0
 
double epsilon2Tree1_ = 100
 
double epsilon2Tree2_ = 100
 
double epsilon3Tree1_ = 100
 
double epsilon3Tree2_ = 100
 
double persistenceThreshold_ = 0
 
bool barycenterMergeTree_ = false
 
bool useMinMaxPair_ = true
 
bool deleteMultiPersPairs_ = false
 
bool branchDecomposition_ = true
 
int wassersteinPower_ = 2
 
bool normalizedWasserstein_ = true
 
bool keepSubtree_ = false
 
double nonMatchingWeight_ = 1.0
 
bool distanceSquaredRoot_ = true
 
bool useFullMerge_ = false
 
bool isPersistenceDiagram_ = false
 
bool convertToDiagram_ = false
 
double mixtureCoefficient_ = 0.5
 
bool useDoubleInput_ = false
 
bool parallelize_ = true
 
int nodePerTask_ = 32
 
bool cleanTree_ = true
 
std::vector< std::vector< int > > treesNodeCorr_
 
- Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode lastLineMode = ttk::debug::LineMode::NEW
 

Detailed Description

TTK VTK-filter that wraps the ttk::MergeTreeTemporalReductionDecoding module.

Author
Mathieu Pont (mathi.nosp@m.eu.p.nosp@m.ont@l.nosp@m.ip6..nosp@m.fr)
Date
2021.

This VTK filter uses the ttk::MergeTreeTemporalReductionDecoding module to compute the reconstruction of a reduced sequence of merge trees.

Parameters
InputvtkMultiBlockDataSet Key frames.
InputvtkTable Interpolation coefficients.
OutputvtkMultiBlockDataSet Input trees

See the corresponding standalone program for a usage example:

See the related ParaView example state files for usage examples within a VTK pipeline.

See also
ttk::MergeTreeTemporalReductionDecoding
ttkAlgorithm

Related publication
"Wasserstein Distances, Geodesics and Barycenters of Merge Trees"
Mathieu Pont, Jules Vidal, Julie Delon, Julien Tierny.
Proc. of IEEE VIS 2021.
IEEE Transactions on Visualization and Computer Graphics, 2021

Online examples:

Definition at line 74 of file ttkMergeTreeTemporalReductionDecoding.h.

Member Typedef Documentation

◆ Superclass

Definition at line 199 of file ttkMergeTreeTemporalReductionDecoding.h.

Constructor & Destructor Documentation

◆ ttkMergeTreeTemporalReductionDecoding()

ttkMergeTreeTemporalReductionDecoding::ttkMergeTreeTemporalReductionDecoding ( )
protected

Implement the filter constructor and destructor (see cpp file)

Implement the filter constructor and destructor in the cpp file.

The constructor has to specify the number of input and output ports with the functions SetNumberOfInputPorts and SetNumberOfOutputPorts, respectively. It should also set default values for all filter parameters.

The destructor is usually empty unless you want to manage memory explicitly, by for example allocating memory on the heap that needs to be freed when the filter is destroyed.

Definition at line 35 of file ttkMergeTreeTemporalReductionDecoding.cpp.

◆ ~ttkMergeTreeTemporalReductionDecoding()

ttkMergeTreeTemporalReductionDecoding::~ttkMergeTreeTemporalReductionDecoding ( )
overrideprotecteddefault

Member Function Documentation

◆ FillInputPortInformation()

int ttkMergeTreeTemporalReductionDecoding::FillInputPortInformation ( int  port,
vtkInformation *  info 
)
overrideprotected

Specify the input data type of each input port (see cpp file)

Specify the required input data type of each input port

This method specifies the required input object data types of the filter by adding the vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE() key to the port information.

Definition at line 50 of file ttkMergeTreeTemporalReductionDecoding.cpp.

◆ FillOutputPortInformation()

int ttkMergeTreeTemporalReductionDecoding::FillOutputPortInformation ( int  port,
vtkInformation *  info 
)
overrideprotected

Specify the data object type of each output port (see cpp file)

Specify the data object type of each output port

This method specifies in the port information object the data type of the corresponding output objects. It is possible to either explicitly specify a type by adding a vtkDataObject::DATA_TYPE_NAME() key:

 info->Set( vtkDataObject::DATA_TYPE_NAME(), "vtkUnstructuredGrid" );

or to pass a type of an input port to an output port by adding the ttkAlgorithm::SAME_DATA_TYPE_AS_INPUT_PORT() key (see below).

Note: prior to the execution of the RequestData method the pipeline will initialize empty output data objects based on this information.

Definition at line 76 of file ttkMergeTreeTemporalReductionDecoding.cpp.

◆ GetAssignmentSolver()

int ttkMergeTreeTemporalReductionDecoding::GetAssignmentSolver ( )
inline

Definition at line 144 of file ttkMergeTreeTemporalReductionDecoding.h.

◆ GetBranchDecompositionPlanarLayout()

virtual bool ttkMergeTreeTemporalReductionDecoding::GetBranchDecompositionPlanarLayout ( )
virtual

◆ GetBranchSpacing()

virtual double ttkMergeTreeTemporalReductionDecoding::GetBranchSpacing ( )
virtual

◆ GetClassName()

virtual const char * ttkMergeTreeTemporalReductionDecoding::GetClassName ( )
virtual

Reimplemented from ttkAlgorithm.

◆ GetDimensionSpacing()

virtual double ttkMergeTreeTemporalReductionDecoding::GetDimensionSpacing ( )
virtual

◆ GetDimensionToShift()

virtual int ttkMergeTreeTemporalReductionDecoding::GetDimensionToShift ( )
virtual

◆ GetExcludeImportantPairsHigher()

virtual std::string ttkMergeTreeTemporalReductionDecoding::GetExcludeImportantPairsHigher ( )
virtual

◆ GetExcludeImportantPairsLower()

virtual std::string ttkMergeTreeTemporalReductionDecoding::GetExcludeImportantPairsLower ( )
virtual

◆ GetImportantPairs()

virtual double ttkMergeTreeTemporalReductionDecoding::GetImportantPairs ( )
virtual

◆ GetImportantPairsSpacing()

virtual double ttkMergeTreeTemporalReductionDecoding::GetImportantPairsSpacing ( )
virtual

◆ GetMaximumImportantPairs()

virtual int ttkMergeTreeTemporalReductionDecoding::GetMaximumImportantPairs ( )
virtual

◆ GetMinimumImportantPairs()

virtual int ttkMergeTreeTemporalReductionDecoding::GetMinimumImportantPairs ( )
virtual

◆ GetNonImportantPairsProximity()

virtual double ttkMergeTreeTemporalReductionDecoding::GetNonImportantPairsProximity ( )
virtual

◆ GetNonImportantPairsSpacing()

virtual double ttkMergeTreeTemporalReductionDecoding::GetNonImportantPairsSpacing ( )
virtual

◆ GetOutputTrees()

virtual bool ttkMergeTreeTemporalReductionDecoding::GetOutputTrees ( )
virtual

◆ GetPlanarLayout()

virtual bool ttkMergeTreeTemporalReductionDecoding::GetPlanarLayout ( )
virtual

◆ GetRescaleTreesIndividually()

virtual bool ttkMergeTreeTemporalReductionDecoding::GetRescaleTreesIndividually ( )
virtual

◆ IsA()

virtual int ttkMergeTreeTemporalReductionDecoding::IsA ( const char *  type)
virtual

Reimplemented from ttkAlgorithm.

◆ IsTypeOf()

static int ttkMergeTreeTemporalReductionDecoding::IsTypeOf ( const char *  type)
static

◆ New()

static ttkMergeTreeTemporalReductionDecoding * ttkMergeTreeTemporalReductionDecoding::New ( )
static

This static method and the macro below are VTK conventions on how to instantiate VTK objects. You don't have to modify this.

◆ RequestData()

int ttkMergeTreeTemporalReductionDecoding::RequestData ( vtkInformation *  request,
vtkInformationVector **  inputVector,
vtkInformationVector *  outputVector 
)
overrideprotected

Pass VTK data to the base code and convert base code output to VTK (see cpp file)

Pass VTK data to the base code and convert base code output to VTK

This method is called during the pipeline execution to update the already initialized output data objects based on the given input data objects and filter parameters.

Note: 1) The passed input data objects are validated based on the information provided by the FillInputPortInformation method. 2) The output objects are already initialized based on the information provided by the FillOutputPortInformation method.

Definition at line 98 of file ttkMergeTreeTemporalReductionDecoding.cpp.

◆ run()

template<class dataType >
int ttkMergeTreeTemporalReductionDecoding::run ( vtkInformationVector *  outputVector,
std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees,
std::vector< std::tuple< double, int, int, int, int > > &  coefs,
std::vector< bool > &  interpolatedTrees 
)
protected

Definition at line 154 of file ttkMergeTreeTemporalReductionDecoding.cpp.

◆ runCompute()

template<class dataType >
int ttkMergeTreeTemporalReductionDecoding::runCompute ( std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees,
std::vector< std::tuple< double, int, int, int, int > > &  coefs 
)
protected

Definition at line 166 of file ttkMergeTreeTemporalReductionDecoding.cpp.

◆ runOutput()

template<class dataType >
int ttkMergeTreeTemporalReductionDecoding::runOutput ( vtkInformationVector *  outputVector,
std::vector< vtkSmartPointer< vtkMultiBlockDataSet > > &  inputTrees,
std::vector< std::tuple< double, int, int, int, int > > &  coefs,
std::vector< bool > &  interpolatedTrees 
)
protected

Definition at line 202 of file ttkMergeTreeTemporalReductionDecoding.cpp.

◆ SafeDownCast()

static ttkMergeTreeTemporalReductionDecoding * ttkMergeTreeTemporalReductionDecoding::SafeDownCast ( vtkObject *  o)
static

◆ SetAssignmentSolver()

void ttkMergeTreeTemporalReductionDecoding::SetAssignmentSolver ( int  assignmentSolver)
inline

Automatically generate getters and setters of filter parameters via vtkMacros.

Definition at line 139 of file ttkMergeTreeTemporalReductionDecoding.h.

◆ SetBranchDecompositionPlanarLayout()

virtual void ttkMergeTreeTemporalReductionDecoding::SetBranchDecompositionPlanarLayout ( bool  )
virtual

◆ SetBranchSpacing()

virtual void ttkMergeTreeTemporalReductionDecoding::SetBranchSpacing ( double  )
virtual

◆ SetDimensionSpacing()

virtual void ttkMergeTreeTemporalReductionDecoding::SetDimensionSpacing ( double  )
virtual

◆ SetDimensionToShift()

virtual void ttkMergeTreeTemporalReductionDecoding::SetDimensionToShift ( int  )
virtual

◆ SetExcludeImportantPairsHigher()

virtual void ttkMergeTreeTemporalReductionDecoding::SetExcludeImportantPairsHigher ( const std::string &  )
virtual

◆ SetExcludeImportantPairsLower()

virtual void ttkMergeTreeTemporalReductionDecoding::SetExcludeImportantPairsLower ( const std::string &  )
virtual

◆ SetImportantPairs()

virtual void ttkMergeTreeTemporalReductionDecoding::SetImportantPairs ( double  )
virtual

◆ SetImportantPairsSpacing()

virtual void ttkMergeTreeTemporalReductionDecoding::SetImportantPairsSpacing ( double  )
virtual

◆ SetMaximumImportantPairs()

virtual void ttkMergeTreeTemporalReductionDecoding::SetMaximumImportantPairs ( int  )
virtual

◆ SetMinimumImportantPairs()

virtual void ttkMergeTreeTemporalReductionDecoding::SetMinimumImportantPairs ( int  )
virtual

◆ SetNonImportantPairsProximity()

virtual void ttkMergeTreeTemporalReductionDecoding::SetNonImportantPairsProximity ( double  )
virtual

◆ SetNonImportantPairsSpacing()

virtual void ttkMergeTreeTemporalReductionDecoding::SetNonImportantPairsSpacing ( double  )
virtual

◆ SetOutputTrees()

virtual void ttkMergeTreeTemporalReductionDecoding::SetOutputTrees ( bool  )
virtual

◆ SetPlanarLayout()

virtual void ttkMergeTreeTemporalReductionDecoding::SetPlanarLayout ( bool  )
virtual

◆ SetRescaleTreesIndividually()

virtual void ttkMergeTreeTemporalReductionDecoding::SetRescaleTreesIndividually ( bool  )
virtual

The documentation for this class was generated from the following files: