TTK processing package for the topological simplification of scalar data. More...

#include <TopologicalSimplification.h>

Inheritance diagram for ttk::TopologicalSimplification:

Public Types
enum class	BACKEND { LEGACY , LTS , TO }

Public Member Functions
	TopologicalSimplification ()

template<typename dataType, typename triangulationType>
int	execute (const dataType const inputScalars, dataType const outputScalars, const SimplexId const identifiers, const SimplexId const inputOffsets, SimplexId *const offsets, const SimplexId constraintNumber, const bool addPerturbation, triangulationType &triangulation, const ttk::DiagramType &constraintDiagram={})

void	setBackend (const BACKEND arg)

int	preconditionTriangulation (AbstractTriangulation *triangulation)

Public Member Functions inherited from ttk::Debug
	Debug ()

	~Debug () override

virtual int	setDebugLevel (const int &debugLevel)

int	setWrapper (const Wrapper *wrapper) override

int	printMsg (const std::string &msg, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::string > &msgs, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printErr (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printWrn (const std::string &msg, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cerr) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const double &memory, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const double &time, const int &threads, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::PERFORMANCE, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const double &progress, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::vector< std::vector< std::string > > &rows, const debug::Priority &priority=debug::Priority::INFO, const bool hasHeader=true, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

int	printMsg (const debug::Separator &separator, const debug::Priority &priority, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsg (const std::string &msg, const debug::Separator &separator, const debug::LineMode &lineMode=debug::LineMode::NEW, const debug::Priority &priority=debug::Priority::INFO, std::ostream &stream=std::cout) const

void	setDebugMsgPrefix (const std::string &prefix)

Public Member Functions inherited from ttk::BaseClass
	BaseClass ()

virtual	~BaseClass ()=default

int	getThreadNumber () const

virtual int	setThreadNumber (const int threadNumber)

Protected Attributes
BACKEND	backend_ {BACKEND::LTS}

LegacyTopologicalSimplification	legacyObject_

lts::LocalizedTopologicalSimplification	ltsObject_

ttk::TopologicalOptimization	topologyOptimizer_

SimplexId	vertexNumber_ {}

bool	UseFastPersistenceUpdate {true}

bool	FastAssignmentUpdate {true}

int	EpochNumber {1000}

int	PDCMethod {1}

int	MethodOptimization {0}

int	FinePairManagement {0}

bool	ChooseLearningRate {false}

double	LearningRate {0.0001}

double	Alpha {0.5}

double	CoefStopCondition {0.01}

bool	OptimizationWithoutMatching {false}

int	ThresholdMethod {1}

double	Threshold {0.01}

int	LowerThreshold {-1}

int	UpperThreshold {2}

int	PairTypeToDelete {1}

bool	ConstraintAveraging {true}

int	PrintFrequency {10}

Protected Attributes inherited from ttk::Debug
int	debugLevel_

std::string	debugMsgPrefix_

std::string	debugMsgNamePrefix_

Protected Attributes inherited from ttk::BaseClass
bool	lastObject_

int	threadNumber_

Wrapper *	wrapper_

Additional Inherited Members
Protected Member Functions inherited from ttk::Debug
int	printMsgInternal (const std::string &msg, const std::string &right, const std::string &filler, const debug::Priority &priority=debug::Priority::INFO, const debug::LineMode &lineMode=debug::LineMode::NEW, std::ostream &stream=std::cout) const

int	printMsgInternal (const std::string &msg, const debug::Priority &priority, const debug::LineMode &lineMode, std::ostream &stream=std::cout) const

int	welcomeMsg (std::ostream &stream)

Static Protected Attributes inherited from ttk::Debug
static COMMON_EXPORTS debug::LineMode	lastLineMode = ttk::debug::LineMode::NEW

Detailed Description

TTK processing package for the topological simplification of scalar data.

Author: Julien Tierny julie.nosp@m.n.ti.nosp@m.erny@.nosp@m.lip6.nosp@m..fr; Guillaume Favelier guill.nosp@m.aume.nosp@m..fave.nosp@m.lier.nosp@m.@lip6.nosp@m..fr

Date: February 2016

Given an input scalar field and a list of critical points to remove, this class minimally edits the scalar field such that the listed critical points disappear. This procedure is useful to speedup subsequent topological data analysis when outlier critical points can be easily identified. It is also useful for data simplification.

Related publications
"Generalized Topological Simplification of Scalar Fields on Surfaces"
Julien Tierny, Valerio Pascucci
IEEE Transactions on Visualization and Computer Graphics.
Proc. of IEEE VIS 2012.

"Localized Topological Simplification of Scalar Data"
Jonas Lukasczyk, Christoph Garth, Ross Maciejewski, Julien Tierny
IEEE Transactions on Visualization and Computer Graphics.
Proc. of IEEE VIS 2020.

"A Practical Solver for Scalar Data Topological Simplification"
Mohamed Kissi, Mathieu Pont, Joshua A. Levine, Julien Tierny
IEEE Transactions on Visualization and Computer Graphics.
Proc. of IEEE VIS 2024.

See also: ttkTopologicalSimplification.cpp for a usage example.

Online examples:

Definition at line 125 of file TopologicalSimplification.h.

Member Enumeration Documentation

◆ BACKEND

enum class ttk::TopologicalSimplification::BACKEND

strong

Enumerator
LEGACY
LTS
TO

Definition at line 129 of file TopologicalSimplification.h.

Constructor & Destructor Documentation

◆ TopologicalSimplification()

ttk::TopologicalSimplification::TopologicalSimplification ( )

Definition at line 3 of file TopologicalSimplification.cpp.

Member Function Documentation

◆ execute()

template<typename dataType, typename triangulationType>

int ttk::TopologicalSimplification::execute	(	const dataType *const	inputScalars,
		dataType *const	outputScalars,
		const SimplexId *const	identifiers,
		const SimplexId *const	inputOffsets,
		SimplexId *const	offsets,
		const SimplexId	constraintNumber,
		const bool	addPerturbation,
		triangulationType &	triangulation,
		const ttk::DiagramType &	constraintDiagram = {} )

Definition at line 228 of file TopologicalSimplification.h.

◆ preconditionTriangulation()

int ttk::TopologicalSimplification::preconditionTriangulation ( AbstractTriangulation * triangulation )

inline

Definition at line 150 of file TopologicalSimplification.h.

◆ setBackend()

void ttk::TopologicalSimplification::setBackend ( const BACKEND arg )

inline

Definition at line 146 of file TopologicalSimplification.h.

Member Data Documentation

◆ Alpha

double ttk::TopologicalSimplification::Alpha {0.5}

protected

Definition at line 207 of file TopologicalSimplification.h.

◆ backend_

BACKEND ttk::TopologicalSimplification::backend_ {BACKEND::LTS}

protected

Definition at line 179 of file TopologicalSimplification.h.

◆ ChooseLearningRate

bool ttk::TopologicalSimplification::ChooseLearningRate {false}

protected

Definition at line 203 of file TopologicalSimplification.h.

◆ CoefStopCondition

double ttk::TopologicalSimplification::CoefStopCondition {0.01}

protected

Definition at line 211 of file TopologicalSimplification.h.

◆ ConstraintAveraging

bool ttk::TopologicalSimplification::ConstraintAveraging {true}

protected

Definition at line 221 of file TopologicalSimplification.h.

◆ EpochNumber

int ttk::TopologicalSimplification::EpochNumber {1000}

protected

Definition at line 187 of file TopologicalSimplification.h.

◆ FastAssignmentUpdate

bool ttk::TopologicalSimplification::FastAssignmentUpdate {true}

protected

Definition at line 186 of file TopologicalSimplification.h.

◆ FinePairManagement

int ttk::TopologicalSimplification::FinePairManagement {0}

protected

Definition at line 200 of file TopologicalSimplification.h.

◆ LearningRate

double ttk::TopologicalSimplification::LearningRate {0.0001}

protected

Definition at line 204 of file TopologicalSimplification.h.

◆ legacyObject_

LegacyTopologicalSimplification ttk::TopologicalSimplification::legacyObject_

protected

Definition at line 180 of file TopologicalSimplification.h.

◆ LowerThreshold

int ttk::TopologicalSimplification::LowerThreshold {-1}

protected

Definition at line 217 of file TopologicalSimplification.h.

◆ ltsObject_

lts::LocalizedTopologicalSimplification ttk::TopologicalSimplification::ltsObject_

protected

Definition at line 181 of file TopologicalSimplification.h.

◆ MethodOptimization

int ttk::TopologicalSimplification::MethodOptimization {0}

protected

Definition at line 195 of file TopologicalSimplification.h.

◆ OptimizationWithoutMatching

bool ttk::TopologicalSimplification::OptimizationWithoutMatching {false}

protected

Definition at line 214 of file TopologicalSimplification.h.

◆ PairTypeToDelete

int ttk::TopologicalSimplification::PairTypeToDelete {1}

protected

Definition at line 219 of file TopologicalSimplification.h.

◆ PDCMethod

int ttk::TopologicalSimplification::PDCMethod {1}

protected

Definition at line 191 of file TopologicalSimplification.h.

◆ PrintFrequency

int ttk::TopologicalSimplification::PrintFrequency {10}

protected

Definition at line 223 of file TopologicalSimplification.h.

◆ Threshold

double ttk::TopologicalSimplification::Threshold {0.01}

protected

Definition at line 216 of file TopologicalSimplification.h.

◆ ThresholdMethod

int ttk::TopologicalSimplification::ThresholdMethod {1}

protected

Definition at line 215 of file TopologicalSimplification.h.

◆ topologyOptimizer_

ttk::TopologicalOptimization ttk::TopologicalSimplification::topologyOptimizer_

protected

Definition at line 182 of file TopologicalSimplification.h.

◆ UpperThreshold

int ttk::TopologicalSimplification::UpperThreshold {2}

protected

Definition at line 218 of file TopologicalSimplification.h.

◆ UseFastPersistenceUpdate

bool ttk::TopologicalSimplification::UseFastPersistenceUpdate {true}

protected

Definition at line 185 of file TopologicalSimplification.h.

◆ vertexNumber_

SimplexId ttk::TopologicalSimplification::vertexNumber_ {}

protected

Definition at line 184 of file TopologicalSimplification.h.

The documentation for this class was generated from the following files:

/home/julien/Pro/git/github/thomas/ttk-dani/core/base/topologicalSimplification/TopologicalSimplification.h
/home/julien/Pro/git/github/thomas/ttk-dani/core/base/topologicalSimplification/TopologicalSimplification.cpp

Public Types

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ BACKEND

Constructor & Destructor Documentation

◆ TopologicalSimplification()

Member Function Documentation

◆ execute()

◆ preconditionTriangulation()

◆ setBackend()

Member Data Documentation

◆ Alpha

◆ backend_

◆ ChooseLearningRate

◆ CoefStopCondition

◆ ConstraintAveraging

◆ EpochNumber

◆ FastAssignmentUpdate

◆ FinePairManagement

◆ LearningRate

◆ legacyObject_

◆ LowerThreshold

◆ ltsObject_

◆ MethodOptimization

◆ OptimizationWithoutMatching

◆ PairTypeToDelete

◆ PDCMethod

◆ PrintFrequency

◆ Threshold

◆ ThresholdMethod

◆ topologyOptimizer_

◆ UpperThreshold

◆ UseFastPersistenceUpdate

◆ vertexNumber_